data_7MYJ
#
_model_server_result.job_id            2dbPW6StNUSFF01NM1p1cg 
_model_server_result.datetime_utc      '2024-11-23 11:31:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7myj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":601}' 
#
_entry.id    7MYJ 
#
_exptl.entry_id    7MYJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              470.563 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5S,6R,7R,9R,13cR,14R,16aS)-6-methoxy-5-methyl-7-(methylamino)-6,7,8,9,14,15,16,16a-octahydro-5H,13cH-5,9-epoxy-4b,9a,1 5-triazadibenzo[b,h]cyclonona[1,2,3,4-jkl]cyclopenta[e]-as-indacen-14-ol' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.55 
_cell.angle_gamma         90 
_cell.entry_id            7MYJ 
_cell.length_a            75.844 
_cell.length_b            134.199 
_cell.length_c            141.821 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MYJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H,K,L 1 1 
C,D,F,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 184 A ARG 171 1_555 A N TPO 185 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C TPO 185 A TPO 172 1_555 A N SER 186 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 B C ARG 107 B ARG 107 1_555 B N SEP 108 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale4 B C SEP 108 B SEP 108 1_555 B N HIS 109 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale5 C C ARG 184 C ARG 171 1_555 C N TPO 185 C TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale6 C C TPO 185 C TPO 172 1_555 C N SER 186 C SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 D C ARG 107 D ARG 107 1_555 D N SEP 108 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale8 D C SEP 108 D SEP 108 1_555 D N HIS 109 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C28 H30 N4 O3' 
_chem_comp.formula_weight    470.563 
_chem_comp.id                4O7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5S,6R,7R,9R,13cR,14R,16aS)-6-methoxy-5-methyl-7-(methylamino)-6,7,8,9,14,15,16,16a-octahydro-5H,13cH-5,9-epoxy-4b,9a,1 5-triazadibenzo[b,h]cyclonona[1,2,3,4-jkl]cyclopenta[e]-as-indacen-14-ol' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     staurosporine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C28 N4 4O7 sing 1 n n 
C27 O6 4O7 sing 2 n n 
N4 C23 4O7 sing 3 n n 
C15 C16 4O7 doub 4 n y 
C15 C14 4O7 sing 5 n y 
C16 C17 4O7 sing 6 n y 
C22 C23 4O7 sing 7 n n 
C22 O6 4O7 sing 8 n n 
C22 C21 4O7 sing 9 n n 
C23 C24 4O7 sing 10 n n 
C26 C21 4O7 sing 11 n n 
C14 C13 4O7 doub 12 n y 
C21 N2 4O7 sing 13 n n 
C21 O4 4O7 sing 14 n n 
C17 N2 4O7 sing 15 n y 
C17 C12 4O7 doub 16 n y 
C24 C25 4O7 sing 17 n n 
N2 C18 4O7 sing 18 n y 
C13 C12 4O7 sing 19 n y 
O4 C25 4O7 sing 20 n n 
C12 C11 4O7 sing 21 n y 
C25 N3 4O7 sing 22 n n 
C18 C11 4O7 doub 23 n y 
C18 C19 4O7 sing 24 n n 
C11 C10 4O7 sing 25 n n 
N3 C19 4O7 sing 26 n y 
N3 C20 4O7 sing 27 n y 
C19 C6 4O7 doub 28 n y 
C10 C9 4O7 sing 29 n n 
C10 C7 4O7 sing 30 n n 
C20 C1 4O7 doub 31 n y 
C20 C5 4O7 sing 32 n y 
C9 N1 4O7 sing 33 n n 
C6 C7 4O7 sing 34 n n 
C6 C5 4O7 sing 35 n y 
C1 C2 4O7 sing 36 n y 
C7 C8 4O7 sing 37 n n 
C5 C4 4O7 doub 38 n y 
N1 C8 4O7 sing 39 n n 
C8 O5 4O7 sing 40 n n 
C2 C3 4O7 doub 41 n y 
C4 C3 4O7 sing 42 n y 
C25 H1 4O7 sing 43 n n 
C24 H2 4O7 sing 44 n n 
C24 H3 4O7 sing 45 n n 
C23 H4 4O7 sing 46 n n 
C22 H5 4O7 sing 47 n n 
C26 H6 4O7 sing 48 n n 
C26 H7 4O7 sing 49 n n 
C26 H8 4O7 sing 50 n n 
C7 H9 4O7 sing 51 n n 
C10 H10 4O7 sing 52 n n 
C16 H11 4O7 sing 53 n n 
C15 H12 4O7 sing 54 n n 
C14 H13 4O7 sing 55 n n 
C13 H14 4O7 sing 56 n n 
C9 H15 4O7 sing 57 n n 
C9 H16 4O7 sing 58 n n 
N1 H17 4O7 sing 59 n n 
C8 H19 4O7 sing 60 n n 
O5 H20 4O7 sing 61 n n 
C1 H21 4O7 sing 62 n n 
C2 H22 4O7 sing 63 n n 
C3 H23 4O7 sing 64 n n 
C4 H24 4O7 sing 65 n n 
C27 H25 4O7 sing 66 n n 
C27 H26 4O7 sing 67 n n 
C27 H27 4O7 sing 68 n n 
N4 H28 4O7 sing 69 n n 
C28 H30 4O7 sing 70 n n 
C28 H31 4O7 sing 71 n n 
C28 H32 4O7 sing 72 n n 
#
_atom_sites.entry_id                     7MYJ 
_atom_sites.fract_transf_matrix[1][1]    0.013185 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000587 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007452 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007058 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 4O7 A 1 601 601 4O7 STU . 
H 5 ZQV A 1 602 701 ZQV DRG . 
I 4 4O7 C 1 601 601 4O7 STU . 
J 5 ZQV D 1 701 701 ZQV DRG . 
K 6 AMP E 1 401 401 AMP AMP . 
L 6 AMP E 1 402 501 AMP AMP . 
M 6 AMP F 1 401 401 AMP AMP . 
N 6 AMP F 1 402 501 AMP AMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 4O7 . . . I 4 -21.357 -52.947 -6.402 1 48.49 ? O4 4O7 601 C 1 
HETATM 2 C C25 4O7 . . . I 4 -20.654 -54.021 -5.757 1 47.87 ? C25 4O7 601 C 1 
HETATM 3 C C24 4O7 . . . I 4 -20.04 -55.02 -6.752 1 48.01 ? C24 4O7 601 C 1 
HETATM 4 C C23 4O7 . . . I 4 -20.497 -54.741 -8.187 1 48.34 ? C23 4O7 601 C 1 
HETATM 5 C C22 4O7 . . . I 4 -22.008 -54.484 -8.251 1 47.65 ? C22 4O7 601 C 1 
HETATM 6 C C21 4O7 . . . I 4 -22.358 -53.238 -7.397 1 47.63 ? C21 4O7 601 C 1 
HETATM 7 C C26 4O7 . . . I 4 -22.254 -52.002 -8.292 1 47.85 ? C26 4O7 601 C 1 
HETATM 8 N N2 4O7 . . . I 4 -23.692 -53.326 -6.688 1 47.14 ? N2 4O7 601 C 1 
HETATM 9 C C18 4O7 . . . I 4 -23.832 -54.293 -5.728 1 46.25 ? C18 4O7 601 C 1 
HETATM 10 C C19 4O7 . . . I 4 -22.88 -54.464 -4.579 1 45.76 ? C19 4O7 601 C 1 
HETATM 11 C C6 4O7 . . . I 4 -23.362 -55.356 -3.504 1 45.43 ? C6 4O7 601 C 1 
HETATM 12 C C7 4O7 . . . I 4 -24.756 -55.105 -3.047 1 45.49 ? C7 4O7 601 C 1 
HETATM 13 C C10 4O7 . . . I 4 -25.755 -54.7 -4.06 1 45.26 ? C10 4O7 601 C 1 
HETATM 14 C C11 4O7 . . . I 4 -25.287 -54.396 -5.444 1 45.77 ? C11 4O7 601 C 1 
HETATM 15 C C12 4O7 . . . I 4 -25.928 -53.543 -6.439 1 46.14 ? C12 4O7 601 C 1 
HETATM 16 C C17 4O7 . . . I 4 -24.863 -53.156 -7.399 1 47.07 ? C17 4O7 601 C 1 
HETATM 17 C C16 4O7 . . . I 4 -25.282 -52.529 -8.583 1 47.73 ? C16 4O7 601 C 1 
HETATM 18 C C15 4O7 . . . I 4 -26.648 -52.352 -8.839 1 47.7 ? C15 4O7 601 C 1 
HETATM 19 C C14 4O7 . . . I 4 -27.629 -52.833 -7.96 1 47.1 ? C14 4O7 601 C 1 
HETATM 20 C C13 4O7 . . . I 4 -27.277 -53.5 -6.781 1 46.02 ? C13 4O7 601 C 1 
HETATM 21 C C9 4O7 . . . I 4 -27.065 -55.185 -3.692 1 44.43 ? C9 4O7 601 C 1 
HETATM 22 N N1 4O7 . . . I 4 -26.811 -55.86 -2.412 1 44.46 ? N1 4O7 601 C 1 
HETATM 23 C C8 4O7 . . . I 4 -25.499 -56.179 -2.349 1 45.26 ? C8 4O7 601 C 1 
HETATM 24 O O5 4O7 . . . I 4 -25.122 -56.371 -1.142 1 46.01 ? O5 4O7 601 C 1 
HETATM 25 C C5 4O7 . . . I 4 -22.16 -55.584 -2.716 1 46.26 ? C5 4O7 601 C 1 
HETATM 26 C C20 4O7 . . . I 4 -21.017 -55.196 -3.578 1 46.87 ? C20 4O7 601 C 1 
HETATM 27 C C1 4O7 . . . I 4 -19.732 -55.466 -3.09 1 47.57 ? C1 4O7 601 C 1 
HETATM 28 C C2 4O7 . . . I 4 -19.58 -56.133 -1.865 1 47.71 ? C2 4O7 601 C 1 
HETATM 29 C C3 4O7 . . . I 4 -20.686 -56.556 -1.108 1 47.23 ? C3 4O7 601 C 1 
HETATM 30 C C4 4O7 . . . I 4 -21.995 -56.341 -1.557 1 46.56 ? C4 4O7 601 C 1 
HETATM 31 N N3 4O7 . . . I 4 -21.531 -54.671 -4.739 1 46.69 ? N3 4O7 601 C 1 
HETATM 32 O O6 4O7 . . . I 4 -22.698 -55.678 -7.839 1 46.87 ? O6 4O7 601 C 1 
HETATM 33 C C27 4O7 . . . I 4 -23.626 -56.187 -8.794 1 46.39 ? C27 4O7 601 C 1 
HETATM 34 N N4 4O7 . . . I 4 -20.072 -55.757 -9.13 1 49.48 ? N4 4O7 601 C 1 
HETATM 35 C C28 4O7 . . . I 4 -19.57 -55.361 -10.435 1 50.94 ? C28 4O7 601 C 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           404 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#