data_7MYJ # _model_server_result.job_id iVmTb5n0CqRjXOBSO0EYEQ _model_server_result.datetime_utc '2024-10-19 03:38:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7myj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 7MYJ # _exptl.entry_id 7MYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 470.563 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5S,6R,7R,9R,13cR,14R,16aS)-6-methoxy-5-methyl-7-(methylamino)-6,7,8,9,14,15,16,16a-octahydro-5H,13cH-5,9-epoxy-4b,9a,1 5-triazadibenzo[b,h]cyclonona[1,2,3,4-jkl]cyclopenta[e]-as-indacen-14-ol' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.55 _cell.angle_gamma 90 _cell.entry_id 7MYJ _cell.length_a 75.844 _cell.length_b 134.199 _cell.length_c 141.821 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,K,L 1 1 C,D,F,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 184 A ARG 171 1_555 A N TPO 185 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 185 A TPO 172 1_555 A N SER 186 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C ARG 107 B ARG 107 1_555 B N SEP 108 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale4 B C SEP 108 B SEP 108 1_555 B N HIS 109 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale5 C C ARG 184 C ARG 171 1_555 C N TPO 185 C TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 C C TPO 185 C TPO 172 1_555 C N SER 186 C SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 D C ARG 107 D ARG 107 1_555 D N SEP 108 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale8 D C SEP 108 D SEP 108 1_555 D N HIS 109 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C28 H30 N4 O3' _chem_comp.formula_weight 470.563 _chem_comp.id 4O7 _chem_comp.mon_nstd_flag . _chem_comp.name '(5S,6R,7R,9R,13cR,14R,16aS)-6-methoxy-5-methyl-7-(methylamino)-6,7,8,9,14,15,16,16a-octahydro-5H,13cH-5,9-epoxy-4b,9a,1 5-triazadibenzo[b,h]cyclonona[1,2,3,4-jkl]cyclopenta[e]-as-indacen-14-ol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms staurosporine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 N4 4O7 sing 1 n n C27 O6 4O7 sing 2 n n N4 C23 4O7 sing 3 n n C15 C16 4O7 doub 4 n y C15 C14 4O7 sing 5 n y C16 C17 4O7 sing 6 n y C22 C23 4O7 sing 7 n n C22 O6 4O7 sing 8 n n C22 C21 4O7 sing 9 n n C23 C24 4O7 sing 10 n n C26 C21 4O7 sing 11 n n C14 C13 4O7 doub 12 n y C21 N2 4O7 sing 13 n n C21 O4 4O7 sing 14 n n C17 N2 4O7 sing 15 n y C17 C12 4O7 doub 16 n y C24 C25 4O7 sing 17 n n N2 C18 4O7 sing 18 n y C13 C12 4O7 sing 19 n y O4 C25 4O7 sing 20 n n C12 C11 4O7 sing 21 n y C25 N3 4O7 sing 22 n n C18 C11 4O7 doub 23 n y C18 C19 4O7 sing 24 n n C11 C10 4O7 sing 25 n n N3 C19 4O7 sing 26 n y N3 C20 4O7 sing 27 n y C19 C6 4O7 doub 28 n y C10 C9 4O7 sing 29 n n C10 C7 4O7 sing 30 n n C20 C1 4O7 doub 31 n y C20 C5 4O7 sing 32 n y C9 N1 4O7 sing 33 n n C6 C7 4O7 sing 34 n n C6 C5 4O7 sing 35 n y C1 C2 4O7 sing 36 n y C7 C8 4O7 sing 37 n n C5 C4 4O7 doub 38 n y N1 C8 4O7 sing 39 n n C8 O5 4O7 sing 40 n n C2 C3 4O7 doub 41 n y C4 C3 4O7 sing 42 n y C25 H1 4O7 sing 43 n n C24 H2 4O7 sing 44 n n C24 H3 4O7 sing 45 n n C23 H4 4O7 sing 46 n n C22 H5 4O7 sing 47 n n C26 H6 4O7 sing 48 n n C26 H7 4O7 sing 49 n n C26 H8 4O7 sing 50 n n C7 H9 4O7 sing 51 n n C10 H10 4O7 sing 52 n n C16 H11 4O7 sing 53 n n C15 H12 4O7 sing 54 n n C14 H13 4O7 sing 55 n n C13 H14 4O7 sing 56 n n C9 H15 4O7 sing 57 n n C9 H16 4O7 sing 58 n n N1 H17 4O7 sing 59 n n C8 H19 4O7 sing 60 n n O5 H20 4O7 sing 61 n n C1 H21 4O7 sing 62 n n C2 H22 4O7 sing 63 n n C3 H23 4O7 sing 64 n n C4 H24 4O7 sing 65 n n C27 H25 4O7 sing 66 n n C27 H26 4O7 sing 67 n n C27 H27 4O7 sing 68 n n N4 H28 4O7 sing 69 n n C28 H30 4O7 sing 70 n n C28 H31 4O7 sing 71 n n C28 H32 4O7 sing 72 n n # _atom_sites.entry_id 7MYJ _atom_sites.fract_transf_matrix[1][1] 0.013185 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000587 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007452 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 4O7 A 1 601 601 4O7 STU . H 5 ZQV A 1 602 701 ZQV DRG . I 4 4O7 C 1 601 601 4O7 STU . J 5 ZQV D 1 701 701 ZQV DRG . K 6 AMP E 1 401 401 AMP AMP . L 6 AMP E 1 402 501 AMP AMP . M 6 AMP F 1 401 401 AMP AMP . N 6 AMP F 1 402 501 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 4O7 . . . I 4 -21.357 -52.947 -6.402 1 48.49 ? O4 4O7 601 C 1 HETATM 2 C C25 4O7 . . . I 4 -20.654 -54.021 -5.757 1 47.87 ? C25 4O7 601 C 1 HETATM 3 C C24 4O7 . . . I 4 -20.04 -55.02 -6.752 1 48.01 ? C24 4O7 601 C 1 HETATM 4 C C23 4O7 . . . I 4 -20.497 -54.741 -8.187 1 48.34 ? C23 4O7 601 C 1 HETATM 5 C C22 4O7 . . . I 4 -22.008 -54.484 -8.251 1 47.65 ? C22 4O7 601 C 1 HETATM 6 C C21 4O7 . . . I 4 -22.358 -53.238 -7.397 1 47.63 ? C21 4O7 601 C 1 HETATM 7 C C26 4O7 . . . I 4 -22.254 -52.002 -8.292 1 47.85 ? C26 4O7 601 C 1 HETATM 8 N N2 4O7 . . . I 4 -23.692 -53.326 -6.688 1 47.14 ? N2 4O7 601 C 1 HETATM 9 C C18 4O7 . . . I 4 -23.832 -54.293 -5.728 1 46.25 ? C18 4O7 601 C 1 HETATM 10 C C19 4O7 . . . I 4 -22.88 -54.464 -4.579 1 45.76 ? C19 4O7 601 C 1 HETATM 11 C C6 4O7 . . . I 4 -23.362 -55.356 -3.504 1 45.43 ? C6 4O7 601 C 1 HETATM 12 C C7 4O7 . . . I 4 -24.756 -55.105 -3.047 1 45.49 ? C7 4O7 601 C 1 HETATM 13 C C10 4O7 . . . I 4 -25.755 -54.7 -4.06 1 45.26 ? C10 4O7 601 C 1 HETATM 14 C C11 4O7 . . . I 4 -25.287 -54.396 -5.444 1 45.77 ? C11 4O7 601 C 1 HETATM 15 C C12 4O7 . . . I 4 -25.928 -53.543 -6.439 1 46.14 ? C12 4O7 601 C 1 HETATM 16 C C17 4O7 . . . I 4 -24.863 -53.156 -7.399 1 47.07 ? C17 4O7 601 C 1 HETATM 17 C C16 4O7 . . . I 4 -25.282 -52.529 -8.583 1 47.73 ? C16 4O7 601 C 1 HETATM 18 C C15 4O7 . . . I 4 -26.648 -52.352 -8.839 1 47.7 ? C15 4O7 601 C 1 HETATM 19 C C14 4O7 . . . I 4 -27.629 -52.833 -7.96 1 47.1 ? C14 4O7 601 C 1 HETATM 20 C C13 4O7 . . . I 4 -27.277 -53.5 -6.781 1 46.02 ? C13 4O7 601 C 1 HETATM 21 C C9 4O7 . . . I 4 -27.065 -55.185 -3.692 1 44.43 ? C9 4O7 601 C 1 HETATM 22 N N1 4O7 . . . I 4 -26.811 -55.86 -2.412 1 44.46 ? N1 4O7 601 C 1 HETATM 23 C C8 4O7 . . . I 4 -25.499 -56.179 -2.349 1 45.26 ? C8 4O7 601 C 1 HETATM 24 O O5 4O7 . . . I 4 -25.122 -56.371 -1.142 1 46.01 ? O5 4O7 601 C 1 HETATM 25 C C5 4O7 . . . I 4 -22.16 -55.584 -2.716 1 46.26 ? C5 4O7 601 C 1 HETATM 26 C C20 4O7 . . . I 4 -21.017 -55.196 -3.578 1 46.87 ? C20 4O7 601 C 1 HETATM 27 C C1 4O7 . . . I 4 -19.732 -55.466 -3.09 1 47.57 ? C1 4O7 601 C 1 HETATM 28 C C2 4O7 . . . I 4 -19.58 -56.133 -1.865 1 47.71 ? C2 4O7 601 C 1 HETATM 29 C C3 4O7 . . . I 4 -20.686 -56.556 -1.108 1 47.23 ? C3 4O7 601 C 1 HETATM 30 C C4 4O7 . . . I 4 -21.995 -56.341 -1.557 1 46.56 ? C4 4O7 601 C 1 HETATM 31 N N3 4O7 . . . I 4 -21.531 -54.671 -4.739 1 46.69 ? N3 4O7 601 C 1 HETATM 32 O O6 4O7 . . . I 4 -22.698 -55.678 -7.839 1 46.87 ? O6 4O7 601 C 1 HETATM 33 C C27 4O7 . . . I 4 -23.626 -56.187 -8.794 1 46.39 ? C27 4O7 601 C 1 HETATM 34 N N4 4O7 . . . I 4 -20.072 -55.757 -9.13 1 49.48 ? N4 4O7 601 C 1 HETATM 35 C C28 4O7 . . . I 4 -19.57 -55.361 -10.435 1 50.94 ? C28 4O7 601 C 1 # _model_server_stats.io_time_ms 121 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #