data_7MYJ # _model_server_result.job_id uHWQCkhwC99kEp6ERyApzQ _model_server_result.datetime_utc '2024-10-19 03:50:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7myj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":701}' # _entry.id 7MYJ # _exptl.entry_id 7MYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 516.976 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5-({5-[(4'R)-4'-acetamido-2',3',4',5'-tetrahydro[1,1'-biphenyl]-4-yl]-6-chloro-1H-imidazo[4,5-b]pyridin-2-yl}oxy)-2-methylbenzoic acid" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.55 _cell.angle_gamma 90 _cell.entry_id 7MYJ _cell.length_a 75.844 _cell.length_b 134.199 _cell.length_c 141.821 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,K,L 1 1 C,D,F,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 184 A ARG 171 1_555 A N TPO 185 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 185 A TPO 172 1_555 A N SER 186 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C ARG 107 B ARG 107 1_555 B N SEP 108 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale4 B C SEP 108 B SEP 108 1_555 B N HIS 109 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale5 C C ARG 184 C ARG 171 1_555 C N TPO 185 C TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 C C TPO 185 C TPO 172 1_555 C N SER 186 C SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 D C ARG 107 D ARG 107 1_555 D N SEP 108 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale8 D C SEP 108 D SEP 108 1_555 D N HIS 109 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C28 H25 Cl N4 O4' _chem_comp.formula_weight 516.976 _chem_comp.id ZQV _chem_comp.mon_nstd_flag . _chem_comp.name "5-({5-[(4'R)-4'-acetamido-2',3',4',5'-tetrahydro[1,1'-biphenyl]-4-yl]-6-chloro-1H-imidazo[4,5-b]pyridin-2-yl}oxy)-2-methylbenzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBK CBI ZQV sing 524 n n CBI NBH ZQV sing 525 n n CBI OBJ ZQV doub 526 n n NBH CBE ZQV sing 527 n n CBE CBD ZQV sing 528 n n CBE CBF ZQV sing 529 n n CBD CBC ZQV sing 530 n n CBF CBG ZQV sing 531 n n CBG CBB ZQV doub 532 n n CBC CBB ZQV sing 533 n n CBB CAY ZQV sing 534 n n CAX CAY ZQV doub 535 n y CAX CAW ZQV sing 536 n y CAY CAZ ZQV sing 537 n y CAW CAV ZQV doub 538 n y CLA CAR ZQV sing 539 n n CAZ CBA ZQV doub 540 n y CAV CBA ZQV sing 541 n y CAV CAS ZQV sing 542 n n CAR CAS ZQV doub 543 n y CAR CAQ ZQV sing 544 n y CAS NAT ZQV sing 545 n y CAQ CAN ZQV doub 546 n y NAT CAO ZQV doub 547 n y CAN CAO ZQV sing 548 n y CAN NAM ZQV sing 549 n y CAO NAP ZQV sing 550 n y NAM CAL ZQV sing 551 n y NAP CAL ZQV doub 552 n y CAL OAK ZQV sing 553 n n OAK CAA ZQV sing 554 n n CAA CAF ZQV doub 555 n y CAA CAB ZQV sing 556 n y CAF CAE ZQV sing 557 n y CAB CAC ZQV doub 558 n y CAE CAD ZQV doub 559 n y CAC CAD ZQV sing 560 n y CAC CAH ZQV sing 561 n n OAI CAH ZQV doub 562 n n CAD CAG ZQV sing 563 n n CAH OAJ ZQV sing 564 n n OAJ H1 ZQV sing 565 n n CAB H2 ZQV sing 566 n n CAG H3 ZQV sing 567 n n CAG H4 ZQV sing 568 n n CAG H5 ZQV sing 569 n n CAE H6 ZQV sing 570 n n CAF H7 ZQV sing 571 n n NAM H8 ZQV sing 572 n n CAQ H10 ZQV sing 573 n n CAW H11 ZQV sing 574 n n CAX H12 ZQV sing 575 n n CBA H13 ZQV sing 576 n n CAZ H14 ZQV sing 577 n n CBC H15 ZQV sing 578 n n CBC H16 ZQV sing 579 n n CBD H17 ZQV sing 580 n n CBD H18 ZQV sing 581 n n CBG H19 ZQV sing 582 n n CBF H20 ZQV sing 583 n n CBF H21 ZQV sing 584 n n CBE H22 ZQV sing 585 n n NBH H23 ZQV sing 586 n n CBK H24 ZQV sing 587 n n CBK H25 ZQV sing 588 n n CBK H26 ZQV sing 589 n n # _atom_sites.entry_id 7MYJ _atom_sites.fract_transf_matrix[1][1] 0.013185 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000587 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007452 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 4O7 A 1 601 601 4O7 STU . H 5 ZQV A 1 602 701 ZQV DRG . I 4 4O7 C 1 601 601 4O7 STU . J 5 ZQV D 1 701 701 ZQV DRG . K 6 AMP E 1 401 401 AMP AMP . L 6 AMP E 1 402 501 AMP AMP . M 6 AMP F 1 401 401 AMP AMP . N 6 AMP F 1 402 501 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAI ZQV . . . J 5 -21.089 -38.738 -10.537 1 78.29 ? OAI ZQV 701 D 1 HETATM 2 C CAH ZQV . . . J 5 -21.386 -39.367 -9.496 1 76.44 ? CAH ZQV 701 D 1 HETATM 3 O OAJ ZQV . . . J 5 -20.573 -39.412 -8.541 1 76.87 ? OAJ ZQV 701 D 1 HETATM 4 C CAC ZQV . . . J 5 -22.631 -39.997 -9.383 1 73.13 ? CAC ZQV 701 D 1 HETATM 5 C CAB ZQV . . . J 5 -23.631 -39.312 -8.688 1 71.61 ? CAB ZQV 701 D 1 HETATM 6 C CAD ZQV . . . J 5 -22.919 -41.274 -9.917 1 70.47 ? CAD ZQV 701 D 1 HETATM 7 C CAG ZQV . . . J 5 -21.981 -42.021 -10.634 1 70.33 ? CAG ZQV 701 D 1 HETATM 8 C CAE ZQV . . . J 5 -24.188 -41.836 -9.73 1 68.27 ? CAE ZQV 701 D 1 HETATM 9 C CAF ZQV . . . J 5 -25.176 -41.145 -9.021 1 67.53 ? CAF ZQV 701 D 1 HETATM 10 C CAA ZQV . . . J 5 -24.892 -39.888 -8.481 1 68.29 ? CAA ZQV 701 D 1 HETATM 11 O OAK ZQV . . . J 5 -25.859 -39.203 -7.797 1 66.19 ? OAK ZQV 701 D 1 HETATM 12 C CAL ZQV . . . J 5 -25.733 -39.156 -6.428 1 63.86 ? CAL ZQV 701 D 1 HETATM 13 N NAM ZQV . . . J 5 -26.664 -38.666 -5.622 1 63.09 ? NAM ZQV 701 D 1 HETATM 14 N NAP ZQV . . . J 5 -24.669 -39.507 -5.707 1 62.44 ? NAP ZQV 701 D 1 HETATM 15 C CAO ZQV . . . J 5 -24.957 -39.267 -4.433 1 61.47 ? CAO ZQV 701 D 1 HETATM 16 N NAT ZQV . . . J 5 -24.241 -39.474 -3.307 1 60.61 ? NAT ZQV 701 D 1 HETATM 17 C CAN ZQV . . . J 5 -26.192 -38.744 -4.381 1 62 ? CAN ZQV 701 D 1 HETATM 18 C CAQ ZQV . . . J 5 -26.738 -38.41 -3.207 1 61.58 ? CAQ ZQV 701 D 1 HETATM 19 C CAR ZQV . . . J 5 -26.023 -38.597 -2.022 1 60.86 ? CAR ZQV 701 D 1 HETATM 20 CL CLA ZQV . . . J 5 -26.791 -38.147 -0.539 1 60.9 ? CLA ZQV 701 D 1 HETATM 21 C CAS ZQV . . . J 5 -24.731 -39.156 -2.087 1 59.94 ? CAS ZQV 701 D 1 HETATM 22 C CAV ZQV . . . J 5 -23.92 -39.38 -0.963 1 58.22 ? CAV ZQV 701 D 1 HETATM 23 C CAW ZQV . . . J 5 -24.381 -40.104 0.148 1 56.99 ? CAW ZQV 701 D 1 HETATM 24 C CAX ZQV . . . J 5 -23.55 -40.313 1.254 1 56.55 ? CAX ZQV 701 D 1 HETATM 25 C CBA ZQV . . . J 5 -22.59 -38.933 -0.974 1 57.95 ? CBA ZQV 701 D 1 HETATM 26 C CAZ ZQV . . . J 5 -21.742 -39.181 0.111 1 57.25 ? CAZ ZQV 701 D 1 HETATM 27 C CAY ZQV . . . J 5 -22.216 -39.867 1.242 1 56.61 ? CAY ZQV 701 D 1 HETATM 28 C CBB ZQV . . . J 5 -21.371 -40.093 2.343 1 56.1 ? CBB ZQV 701 D 1 HETATM 29 C CBC ZQV . . . J 5 -21.316 -41.386 2.927 1 54.63 ? CBC ZQV 701 D 1 HETATM 30 C CBD ZQV . . . J 5 -20.104 -41.582 3.862 1 54.67 ? CBD ZQV 701 D 1 HETATM 31 C CBG ZQV . . . J 5 -20.634 -39.014 2.871 1 56.81 ? CBG ZQV 701 D 1 HETATM 32 C CBF ZQV . . . J 5 -19.738 -39.082 3.954 1 56.75 ? CBF ZQV 701 D 1 HETATM 33 C CBE ZQV . . . J 5 -19.902 -40.368 4.784 1 55.69 ? CBE ZQV 701 D 1 HETATM 34 N NBH ZQV . . . J 5 -18.684 -40.574 5.591 1 56.15 ? NBH ZQV 701 D 1 HETATM 35 C CBI ZQV . . . J 5 -18.594 -40.31 6.91 1 56.33 ? CBI ZQV 701 D 1 HETATM 36 O OBJ ZQV . . . J 5 -19.5 -39.858 7.611 1 56.06 ? OBJ ZQV 701 D 1 HETATM 37 C CBK ZQV . . . J 5 -17.225 -40.614 7.518 1 56.95 ? CBK ZQV 701 D 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 109 _model_server_stats.create_model_time_ms 204 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #