data_7MYM
#
_model_server_result.job_id            8M9MFaPFg7-zr4grNaYqFg 
_model_server_result.datetime_utc      '2024-11-17 23:27:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mym 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":201}' 
#
_entry.id    7MYM 
#
_exptl.entry_id    7MYM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MYM 
_cell.length_a            65.47 
_cell.length_b            113.397 
_cell.length_c            216.578 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MYM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,P 1 1 
B,I,J,K,L,Q 2 1 
C,M,N,O,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 J N N 
? 3 M N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     7MYM 
_atom_sites.fract_transf_matrix[1][1]    0.015274 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008819 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004617 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ARG A 1 201 159 ARG ARG . 
E 3 NAP A 1 202 201 NAP NAP . 
F 4 TOP A 1 203 301 TOP TOP . 
G 5 SO4 A 1 204 1 SO4 SO4 . 
H 5 SO4 A 1 205 3 SO4 SO4 . 
I 2 ARG C 1 201 159 ARG ARG . 
J 3 NAP C 1 202 201 NAP NAP . 
K 4 TOP C 1 203 301 TOP TOP . 
L 5 SO4 C 1 204 2 SO4 SO4 . 
M 3 NAP B 1 201 201 NAP NAP . 
N 4 TOP B 1 202 301 TOP TOP . 
O 5 SO4 B 1 203 4 SO4 SO4 . 
P 6 HOH A 1 301 12 HOH HOH . 
P 6 HOH A 2 302 10 HOH HOH . 
P 6 HOH A 3 303 13 HOH HOH . 
P 6 HOH A 4 304 4 HOH HOH . 
P 6 HOH A 5 305 3 HOH HOH . 
Q 6 HOH C 1 301 7 HOH HOH . 
Q 6 HOH C 2 302 8 HOH HOH . 
Q 6 HOH C 3 303 6 HOH HOH . 
Q 6 HOH C 4 304 1 HOH HOH . 
R 6 HOH B 1 301 2 HOH HOH . 
R 6 HOH B 2 302 11 HOH HOH . 
R 6 HOH B 3 303 9 HOH HOH . 
R 6 HOH B 4 304 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . M 3 -21.42 18.484 -33.465 1 43.45 ? PA NAP 201 B 1 
HETATM 2 O O1A NAP . . . M 3 -22.728 19.182 -33.258 1 40.42 ? O1A NAP 201 B 1 
HETATM 3 O O2A NAP . . . M 3 -20.286 19.107 -34.219 1 40 ? O2A NAP 201 B 1 
HETATM 4 O O5B NAP . . . M 3 -20.876 18.011 -32.055 1 46.79 ? O5B NAP 201 B 1 
HETATM 5 C C5B NAP . . . M 3 -21.772 17.662 -30.994 1 50.94 ? C5B NAP 201 B 1 
HETATM 6 C C4B NAP . . . M 3 -20.905 17.156 -29.873 1 57.13 ? C4B NAP 201 B 1 
HETATM 7 O O4B NAP . . . M 3 -20.507 18.278 -29.052 1 58.08 ? O4B NAP 201 B 1 
HETATM 8 C C3B NAP . . . M 3 -21.522 16.142 -28.9 1 59.77 ? C3B NAP 201 B 1 
HETATM 9 O O3B NAP . . . M 3 -21.447 14.827 -29.434 1 61.36 ? O3B NAP 201 B 1 
HETATM 10 C C2B NAP . . . M 3 -20.624 16.349 -27.691 1 60.81 ? C2B NAP 201 B 1 
HETATM 11 O O2B NAP . . . M 3 -19.339 15.736 -27.888 1 61.05 ? O2B NAP 201 B 1 
HETATM 12 C C1B NAP . . . M 3 -20.51 17.872 -27.701 1 64.7 ? C1B NAP 201 B 1 
HETATM 13 N N9A NAP . . . M 3 -21.614 18.527 -27.016 1 66.01 ? N9A NAP 201 B 1 
HETATM 14 C C8A NAP . . . M 3 -22.756 19.059 -27.559 1 62.92 ? C8A NAP 201 B 1 
HETATM 15 N N7A NAP . . . M 3 -23.56 19.571 -26.663 1 64.81 ? N7A NAP 201 B 1 
HETATM 16 C C5A NAP . . . M 3 -22.915 19.35 -25.454 1 68.56 ? C5A NAP 201 B 1 
HETATM 17 C C6A NAP . . . M 3 -23.254 19.651 -24.12 1 72.28 ? C6A NAP 201 B 1 
HETATM 18 N N6A NAP . . . M 3 -24.378 20.265 -23.765 1 78.57 ? N6A NAP 201 B 1 
HETATM 19 N N1A NAP . . . M 3 -22.384 19.278 -23.149 1 74.53 ? N1A NAP 201 B 1 
HETATM 20 C C2A NAP . . . M 3 -21.249 18.665 -23.504 1 72.69 ? C2A NAP 201 B 1 
HETATM 21 N N3A NAP . . . M 3 -20.822 18.338 -24.72 1 70.37 ? N3A NAP 201 B 1 
HETATM 22 C C4A NAP . . . M 3 -21.712 18.708 -25.66 1 69.06 ? C4A NAP 201 B 1 
HETATM 23 O O3 NAP . . . M 3 -21.729 17.088 -34.163 1 45.88 ? O3 NAP 201 B 1 
HETATM 24 P PN NAP . . . M 3 -23.02 16.661 -34.997 1 50.13 ? PN NAP 201 B 1 
HETATM 25 O O1N NAP . . . M 3 -24.223 17.185 -34.278 1 48.17 ? O1N NAP 201 B 1 
HETATM 26 O O2N NAP . . . M 3 -22.911 15.203 -35.268 1 51.46 ? O2N NAP 201 B 1 
HETATM 27 O O5D NAP . . . M 3 -22.817 17.468 -36.372 1 51.24 ? O5D NAP 201 B 1 
HETATM 28 C C5D NAP . . . M 3 -21.58 17.385 -37.116 1 51.56 ? C5D NAP 201 B 1 
HETATM 29 C C4D NAP . . . M 3 -21.909 17.234 -38.581 1 54.04 ? C4D NAP 201 B 1 
HETATM 30 O O4D NAP . . . M 3 -22.558 18.433 -39.059 1 61.01 ? O4D NAP 201 B 1 
HETATM 31 C C3D NAP . . . M 3 -20.711 17.037 -39.514 1 55.49 ? C3D NAP 201 B 1 
HETATM 32 O O3D NAP . . . M 3 -21.075 16.329 -40.692 1 55.8 ? O3D NAP 201 B 1 
HETATM 33 C C2D NAP . . . M 3 -20.353 18.485 -39.834 1 58.42 ? C2D NAP 201 B 1 
HETATM 34 O O2D NAP . . . M 3 -19.534 18.573 -40.983 1 61.53 ? O2D NAP 201 B 1 
HETATM 35 C C1D NAP . . . M 3 -21.75 19.053 -40.072 1 64.03 ? C1D NAP 201 B 1 
HETATM 36 N N1N NAP . . . M 3 -21.828 20.548 -39.956 1 69.26 ? N1N NAP 201 B 1 
HETATM 37 C C2N NAP . . . M 3 -22.509 21.283 -40.906 1 72.24 ? C2N NAP 201 B 1 
HETATM 38 C C3N NAP . . . M 3 -22.361 22.671 -40.967 1 71.31 ? C3N NAP 201 B 1 
HETATM 39 C C7N NAP . . . M 3 -22.862 23.439 -42.163 1 63.51 ? C7N NAP 201 B 1 
HETATM 40 O O7N NAP . . . M 3 -23.868 23.066 -42.758 1 60.72 ? O7N NAP 201 B 1 
HETATM 41 N N7N NAP . . . M 3 -22.18 24.511 -42.518 1 63.08 ? N7N NAP 201 B 1 
HETATM 42 C C4N NAP . . . M 3 -21.73 23.315 -39.911 1 75.51 ? C4N NAP 201 B 1 
HETATM 43 C C5N NAP . . . M 3 -20.991 22.569 -39.021 1 76.77 ? C5N NAP 201 B 1 
HETATM 44 C C6N NAP . . . M 3 -21.214 21.212 -38.943 1 75.23 ? C6N NAP 201 B 1 
HETATM 45 P P2B NAP . . . M 3 -18.627 15.012 -26.614 1 57.26 ? P2B NAP 201 B 1 
HETATM 46 O O1X NAP . . . M 3 -19.514 15.102 -25.374 1 56.34 ? O1X NAP 201 B 1 
HETATM 47 O O2X NAP . . . M 3 -18.488 13.603 -27.109 1 56.22 ? O2X NAP 201 B 1 
HETATM 48 O O3X NAP . . . M 3 -17.267 15.646 -26.39 1 54.39 ? O3X NAP 201 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#