data_7MYM
#
_model_server_result.job_id            '_EUkLGwR26Sy9PL7s5UaJw' 
_model_server_result.datetime_utc      '2024-11-17 23:44:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mym 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":202}' 
#
_entry.id    7MYM 
#
_exptl.entry_id    7MYM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MYM 
_cell.length_a            65.47 
_cell.length_b            113.397 
_cell.length_c            216.578 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MYM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,P 1 1 
B,I,J,K,L,Q 2 1 
C,M,N,O,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 J N N 
? 3 M N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     7MYM 
_atom_sites.fract_transf_matrix[1][1]    0.015274 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008819 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004617 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ARG A 1 201 159 ARG ARG . 
E 3 NAP A 1 202 201 NAP NAP . 
F 4 TOP A 1 203 301 TOP TOP . 
G 5 SO4 A 1 204 1 SO4 SO4 . 
H 5 SO4 A 1 205 3 SO4 SO4 . 
I 2 ARG C 1 201 159 ARG ARG . 
J 3 NAP C 1 202 201 NAP NAP . 
K 4 TOP C 1 203 301 TOP TOP . 
L 5 SO4 C 1 204 2 SO4 SO4 . 
M 3 NAP B 1 201 201 NAP NAP . 
N 4 TOP B 1 202 301 TOP TOP . 
O 5 SO4 B 1 203 4 SO4 SO4 . 
P 6 HOH A 1 301 12 HOH HOH . 
P 6 HOH A 2 302 10 HOH HOH . 
P 6 HOH A 3 303 13 HOH HOH . 
P 6 HOH A 4 304 4 HOH HOH . 
P 6 HOH A 5 305 3 HOH HOH . 
Q 6 HOH C 1 301 7 HOH HOH . 
Q 6 HOH C 2 302 8 HOH HOH . 
Q 6 HOH C 3 303 6 HOH HOH . 
Q 6 HOH C 4 304 1 HOH HOH . 
R 6 HOH B 1 301 2 HOH HOH . 
R 6 HOH B 2 302 11 HOH HOH . 
R 6 HOH B 3 303 9 HOH HOH . 
R 6 HOH B 4 304 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . J 3 22.235 18.969 2.749 1 51.58 ? PA NAP 202 C 1 
HETATM 2 O O1A NAP . . . J 3 20.996 18.134 2.839 1 49.18 ? O1A NAP 202 C 1 
HETATM 3 O O2A NAP . . . J 3 22.217 20.268 2.017 1 49.86 ? O2A NAP 202 C 1 
HETATM 4 O O5B NAP . . . J 3 22.794 19.234 4.224 1 60.12 ? O5B NAP 202 C 1 
HETATM 5 C C5B NAP . . . J 3 23.358 18.194 5.053 1 60.75 ? C5B NAP 202 C 1 
HETATM 6 C C4B NAP . . . J 3 24.186 18.877 6.108 1 61.33 ? C4B NAP 202 C 1 
HETATM 7 O O4B NAP . . . J 3 23.317 19.799 6.811 1 58.09 ? O4B NAP 202 C 1 
HETATM 8 C C3B NAP . . . J 3 24.824 17.982 7.181 1 62.37 ? C3B NAP 202 C 1 
HETATM 9 O O3B NAP . . . J 3 26.15 17.627 6.814 1 63.8 ? O3B NAP 202 C 1 
HETATM 10 C C2B NAP . . . J 3 24.816 18.894 8.395 1 64.67 ? C2B NAP 202 C 1 
HETATM 11 O O2B NAP . . . J 3 25.868 19.858 8.367 1 67.08 ? O2B NAP 202 C 1 
HETATM 12 C C1B NAP . . . J 3 23.505 19.642 8.196 1 67.76 ? C1B NAP 202 C 1 
HETATM 13 N N9A NAP . . . J 3 22.349 18.958 8.761 1 73.16 ? N9A NAP 202 C 1 
HETATM 14 C C8A NAP . . . J 3 21.329 18.31 8.107 1 69.66 ? C8A NAP 202 C 1 
HETATM 15 N N7A NAP . . . J 3 20.413 17.839 8.919 1 66.06 ? N7A NAP 202 C 1 
HETATM 16 C C5A NAP . . . J 3 20.852 18.205 10.186 1 71.35 ? C5A NAP 202 C 1 
HETATM 17 C C6A NAP . . . J 3 20.324 18.007 11.478 1 71.2 ? C6A NAP 202 C 1 
HETATM 18 N N6A NAP . . . J 3 19.179 17.381 11.731 1 74.34 ? N6A NAP 202 C 1 
HETATM 19 N N1A NAP . . . J 3 21.019 18.51 12.526 1 70.16 ? N1A NAP 202 C 1 
HETATM 20 C C2A NAP . . . J 3 22.166 19.152 12.283 1 71.22 ? C2A NAP 202 C 1 
HETATM 21 N N3A NAP . . . J 3 22.756 19.403 11.12 1 71.17 ? N3A NAP 202 C 1 
HETATM 22 C C4A NAP . . . J 3 22.044 18.896 10.099 1 73.8 ? C4A NAP 202 C 1 
HETATM 23 O O3 NAP . . . J 3 23.396 18.086 2.103 1 55.65 ? O3 NAP 202 C 1 
HETATM 24 P PN NAP . . . J 3 23.26 16.885 1.05 1 61.4 ? PN NAP 202 C 1 
HETATM 25 O O1N NAP . . . J 3 21.811 16.613 0.81 1 58.24 ? O1N NAP 202 C 1 
HETATM 26 O O2N NAP . . . J 3 24.115 15.75 1.519 1 59.32 ? O2N NAP 202 C 1 
HETATM 27 O O5D NAP . . . J 3 23.894 17.564 -0.257 1 52.15 ? O5D NAP 202 C 1 
HETATM 28 C C5D NAP . . . J 3 23.078 18.545 -0.918 1 49.12 ? C5D NAP 202 C 1 
HETATM 29 C C4D NAP . . . J 3 22.992 18.194 -2.379 1 50.01 ? C4D NAP 202 C 1 
HETATM 30 O O4D NAP . . . J 3 21.639 18.409 -2.839 1 54.29 ? O4D NAP 202 C 1 
HETATM 31 C C3D NAP . . . J 3 23.885 19.026 -3.304 1 49.56 ? C3D NAP 202 C 1 
HETATM 32 O O3D NAP . . . J 3 24.424 18.212 -4.336 1 49.7 ? O3D NAP 202 C 1 
HETATM 33 C C2D NAP . . . J 3 22.904 20.081 -3.817 1 48.59 ? C2D NAP 202 C 1 
HETATM 34 O O2D NAP . . . J 3 23.354 20.608 -5.046 1 47.88 ? O2D NAP 202 C 1 
HETATM 35 C C1D NAP . . . J 3 21.631 19.265 -3.978 1 51.36 ? C1D NAP 202 C 1 
HETATM 36 N N1N NAP . . . J 3 20.358 20.06 -3.993 1 56.15 ? N1N NAP 202 C 1 
HETATM 37 C C2N NAP . . . J 3 19.427 19.834 -4.989 1 61.73 ? C2N NAP 202 C 1 
HETATM 38 C C3N NAP . . . J 3 18.186 20.476 -4.993 1 61.52 ? C3N NAP 202 C 1 
HETATM 39 C C7N NAP . . . J 3 17.31 20.296 -6.214 1 58.09 ? C7N NAP 202 C 1 
HETATM 40 O O7N NAP . . . J 3 16.32 19.57 -6.159 1 55.65 ? O7N NAP 202 C 1 
HETATM 41 N N7N NAP . . . J 3 17.675 20.913 -7.325 1 56.88 ? N7N NAP 202 C 1 
HETATM 42 C C4N NAP . . . J 3 17.837 21.244 -3.886 1 61.65 ? C4N NAP 202 C 1 
HETATM 43 C C5N NAP . . . J 3 18.792 21.503 -2.914 1 63.42 ? C5N NAP 202 C 1 
HETATM 44 C C6N NAP . . . J 3 20.061 20.964 -3.028 1 60.01 ? C6N NAP 202 C 1 
HETATM 45 P P2B NAP . . . J 3 26.854 19.855 9.637 1 65.02 ? P2B NAP 202 C 1 
HETATM 46 O O1X NAP . . . J 3 26.155 19.304 10.864 1 70.93 ? O1X NAP 202 C 1 
HETATM 47 O O2X NAP . . . J 3 27.952 18.95 9.147 1 69.05 ? O2X NAP 202 C 1 
HETATM 48 O O3X NAP . . . J 3 27.339 21.266 9.855 1 67.26 ? O3X NAP 202 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           694 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           48 
#