data_7MYP # _model_server_result.job_id Lh250Y6Fo9819w---XIiAw _model_server_result.datetime_utc '2024-11-28 22:47:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7myp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 7MYP # _exptl.entry_id 7MYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7MYP _cell.length_a 62.943 _cell.length_b 62.943 _cell.length_c 82.72 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 213 n n C1 C2 GOL sing 214 n n C1 H11 GOL sing 215 n n C1 H12 GOL sing 216 n n O1 HO1 GOL sing 217 n n C2 O2 GOL sing 218 n n C2 C3 GOL sing 219 n n C2 H2 GOL sing 220 n n O2 HO2 GOL sing 221 n n C3 O3 GOL sing 222 n n C3 H31 GOL sing 223 n n C3 H32 GOL sing 224 n n O3 HO3 GOL sing 225 n n # _atom_sites.entry_id 7MYP _atom_sites.fract_transf_matrix[1][1] 0.015887 _atom_sites.fract_transf_matrix[1][2] 0.009173 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 501 501 GOL GOL . D 3 CL A 1 502 601 CL CL . E 3 CL A 1 503 602 CL CL . F 4 G04 B 1 401 401 G04 G04 . G 2 GOL B 1 402 502 GOL GOL . H 5 HOH A 1 601 66 HOH HOH . H 5 HOH A 2 602 26 HOH HOH . H 5 HOH A 3 603 80 HOH HOH . H 5 HOH A 4 604 97 HOH HOH . H 5 HOH A 5 605 4 HOH HOH . H 5 HOH A 6 606 103 HOH HOH . H 5 HOH A 7 607 22 HOH HOH . H 5 HOH A 8 608 53 HOH HOH . H 5 HOH A 9 609 23 HOH HOH . H 5 HOH A 10 610 2 HOH HOH . H 5 HOH A 11 611 102 HOH HOH . H 5 HOH A 12 612 36 HOH HOH . H 5 HOH A 13 613 99 HOH HOH . H 5 HOH A 14 614 42 HOH HOH . H 5 HOH A 15 615 64 HOH HOH . H 5 HOH A 16 616 19 HOH HOH . H 5 HOH A 17 617 46 HOH HOH . H 5 HOH A 18 618 24 HOH HOH . H 5 HOH A 19 619 79 HOH HOH . H 5 HOH A 20 620 30 HOH HOH . H 5 HOH A 21 621 57 HOH HOH . H 5 HOH A 22 622 94 HOH HOH . H 5 HOH A 23 623 8 HOH HOH . H 5 HOH A 24 624 56 HOH HOH . H 5 HOH A 25 625 67 HOH HOH . H 5 HOH A 26 626 50 HOH HOH . H 5 HOH A 27 627 5 HOH HOH . H 5 HOH A 28 628 100 HOH HOH . H 5 HOH A 29 629 73 HOH HOH . H 5 HOH A 30 630 39 HOH HOH . H 5 HOH A 31 631 92 HOH HOH . H 5 HOH A 32 632 72 HOH HOH . H 5 HOH A 33 633 82 HOH HOH . H 5 HOH A 34 634 20 HOH HOH . H 5 HOH A 35 635 6 HOH HOH . H 5 HOH A 36 636 77 HOH HOH . H 5 HOH A 37 637 54 HOH HOH . H 5 HOH A 38 638 71 HOH HOH . H 5 HOH A 39 639 10 HOH HOH . H 5 HOH A 40 640 41 HOH HOH . H 5 HOH A 41 641 101 HOH HOH . H 5 HOH A 42 642 93 HOH HOH . H 5 HOH A 43 643 7 HOH HOH . H 5 HOH A 44 644 81 HOH HOH . H 5 HOH A 45 645 89 HOH HOH . H 5 HOH A 46 646 87 HOH HOH . H 5 HOH A 47 647 83 HOH HOH . I 5 HOH B 1 501 84 HOH HOH . I 5 HOH B 2 502 85 HOH HOH . I 5 HOH B 3 503 69 HOH HOH . I 5 HOH B 4 504 86 HOH HOH . I 5 HOH B 5 505 40 HOH HOH . I 5 HOH B 6 506 55 HOH HOH . I 5 HOH B 7 507 65 HOH HOH . I 5 HOH B 8 508 29 HOH HOH . I 5 HOH B 9 509 63 HOH HOH . I 5 HOH B 10 510 3 HOH HOH . I 5 HOH B 11 511 1 HOH HOH . I 5 HOH B 12 512 21 HOH HOH . I 5 HOH B 13 513 78 HOH HOH . I 5 HOH B 14 514 15 HOH HOH . I 5 HOH B 15 515 44 HOH HOH . I 5 HOH B 16 516 27 HOH HOH . I 5 HOH B 17 517 32 HOH HOH . I 5 HOH B 18 518 58 HOH HOH . I 5 HOH B 19 519 45 HOH HOH . I 5 HOH B 20 520 60 HOH HOH . I 5 HOH B 21 521 75 HOH HOH . I 5 HOH B 22 522 16 HOH HOH . I 5 HOH B 23 523 51 HOH HOH . I 5 HOH B 24 524 43 HOH HOH . I 5 HOH B 25 525 18 HOH HOH . I 5 HOH B 26 526 13 HOH HOH . I 5 HOH B 27 527 62 HOH HOH . I 5 HOH B 28 528 91 HOH HOH . I 5 HOH B 29 529 49 HOH HOH . I 5 HOH B 30 530 52 HOH HOH . I 5 HOH B 31 531 11 HOH HOH . I 5 HOH B 32 532 61 HOH HOH . I 5 HOH B 33 533 76 HOH HOH . I 5 HOH B 34 534 14 HOH HOH . I 5 HOH B 35 535 37 HOH HOH . I 5 HOH B 36 536 17 HOH HOH . I 5 HOH B 37 537 34 HOH HOH . I 5 HOH B 38 538 47 HOH HOH . I 5 HOH B 39 539 35 HOH HOH . I 5 HOH B 40 540 70 HOH HOH . I 5 HOH B 41 541 95 HOH HOH . I 5 HOH B 42 542 98 HOH HOH . I 5 HOH B 43 543 25 HOH HOH . I 5 HOH B 44 544 12 HOH HOH . I 5 HOH B 45 545 59 HOH HOH . I 5 HOH B 46 546 96 HOH HOH . I 5 HOH B 47 547 68 HOH HOH . I 5 HOH B 48 548 90 HOH HOH . I 5 HOH B 49 549 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 2 4.084 36.32 16.388 1 45.65 ? C1 GOL 402 B 1 HETATM 2 O O1 GOL . . . G 2 3.505 35.051 16.094 1 43.52 ? O1 GOL 402 B 1 HETATM 3 C C2 GOL . . . G 2 3.099 37.453 16.172 1 48.16 ? C2 GOL 402 B 1 HETATM 4 O O2 GOL . . . G 2 2.316 37.206 15.006 1 48.59 ? O2 GOL 402 B 1 HETATM 5 C C3 GOL . . . G 2 3.758 38.808 16.032 1 43.97 ? C3 GOL 402 B 1 HETATM 6 O O3 GOL . . . G 2 2.791 39.85 15.915 1 35.82 ? O3 GOL 402 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #