data_7MZD # _model_server_result.job_id RQMedup5ia-kGg2xGTZJxw _model_server_result.datetime_utc '2025-04-18 16:53:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mzd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":901}' # _entry.id 7MZD # _exptl.entry_id 7MZD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 628.708 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description resiniferatoxin _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MZD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 282 C CYS 386 1_555 D SG CYS 286 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A O GLY 516 A GLY 643 1_555 F NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 F NA NA . A NA 902 1_555 B O GLY 516 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc3 F NA NA . A NA 902 1_555 C O GLY 516 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 F NA NA . A NA 902 1_555 D O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? # _chem_comp.formula 'C37 H40 O9' _chem_comp.formula_weight 628.708 _chem_comp.id 6EU _chem_comp.mon_nstd_flag . _chem_comp.name resiniferatoxin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RTX # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAI CBS 6EU sing 1 n n CBR CBS 6EU doub 2 n y CBR CBP 6EU sing 3 n y CBS CBQ 6EU sing 4 n y CBP CBN 6EU doub 5 n y CBT OAH 6EU sing 6 n n CBQ OAH 6EU sing 7 n n CBQ CBO 6EU doub 8 n y CBN CBO 6EU sing 9 n y CBN CBM 6EU sing 10 n n CBM CBK 6EU sing 11 n n CBD CAV 6EU sing 12 n n OAF CBK 6EU sing 13 n n OAF CBC 6EU sing 14 n n CBK OAG 6EU doub 15 n n CBB CAV 6EU doub 16 n n CAV CAM 6EU sing 17 n n CBC CAX 6EU sing 18 n n CAL OAB 6EU sing 19 n n CAL CAM 6EU sing 20 n n CAL CAK 6EU sing 21 n n OAB CAQ 6EU sing 22 n n CAS CAX 6EU doub 23 n n CAS CAK 6EU sing 24 n n CAM OAC 6EU sing 25 n n CAM CAP 6EU sing 26 n n CAX CAU 6EU sing 27 n n CAK CAJ 6EU sing 28 n n CBH CBJ 6EU doub 29 n y CBH CBE 6EU sing 30 n y OAC CAQ 6EU sing 31 n n CAQ CAY 6EU sing 32 n n CAQ OAA 6EU sing 33 n n CBJ CBL 6EU sing 34 n y CAP CAN 6EU sing 35 n n CAY CBE 6EU sing 36 n n CAU CAR 6EU sing 37 n n OAD CAR 6EU sing 38 n n CBE CBG 6EU doub 39 n y CAJ OAA 6EU sing 40 n n CAJ CAN 6EU sing 41 n n CAJ CAO 6EU sing 42 n n CAN CAT 6EU sing 43 n n CAR CAO 6EU sing 44 n n CAR CAZ 6EU sing 45 n n CBL CBI 6EU doub 46 n y CAO CAW 6EU sing 47 n n CBG CBI 6EU sing 48 n y CAZ OAE 6EU doub 49 n n CAZ CBA 6EU sing 50 n n CAW CBA 6EU doub 51 n n CBA CBF 6EU sing 52 n n CBT H1 6EU sing 53 n n CBT H2 6EU sing 54 n n CBT H3 6EU sing 55 n n CBO HBS 6EU sing 56 n n OAI HAI 6EU sing 57 n n CBR HBU 6EU sing 58 n n CBP HBT 6EU sing 59 n n CBM H4 6EU sing 60 n n CBM H5 6EU sing 61 n n CBC H6 6EU sing 62 n n CBC H7 6EU sing 63 n n CAS H8 6EU sing 64 n n CAK H9 6EU sing 65 n n CAU H10 6EU sing 66 n n CAU H11 6EU sing 67 n n OAD HAD 6EU sing 68 n n CBF H12 6EU sing 69 n n CBF H13 6EU sing 70 n n CBF H14 6EU sing 71 n n CAW H15 6EU sing 72 n n CAO H16 6EU sing 73 n n CAN H17 6EU sing 74 n n CAT H18 6EU sing 75 n n CAT H19 6EU sing 76 n n CAT H20 6EU sing 77 n n CAP H21 6EU sing 78 n n CAP H22 6EU sing 79 n n CBB H24 6EU sing 80 n n CBB H25 6EU sing 81 n n CBD H27 6EU sing 82 n n CBD H28 6EU sing 83 n n CBD H29 6EU sing 84 n n CAL H30 6EU sing 85 n n CAY H31 6EU sing 86 n n CAY H32 6EU sing 87 n n CBG HBL 6EU sing 88 n n CBI HBN 6EU sing 89 n n CBL HBP 6EU sing 90 n n CBJ HBO 6EU sing 91 n n CBH HBM 6EU sing 92 n n # _atom_sites.entry_id 7MZD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6EU A 1 901 901 6EU 6EU . F 3 NA A 1 902 1 NA NA . G 3 NA A 1 903 2 NA NA . H 2 6EU D 1 901 901 6EU 6EU . I 2 6EU B 1 901 901 6EU 6EU . J 2 6EU C 1 901 901 6EU 6EU . K 4 HOH A 1 1001 1001 HOH HOH . L 4 HOH D 1 1001 1001 HOH HOH . M 4 HOH B 1 1001 1001 HOH HOH . N 4 HOH C 1 1001 1001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBT 6EU . . . I 2 137.438 160.872 123.985 1 57.95 ? CBT 6EU 901 B 1 HETATM 2 O OAH 6EU . . . I 2 137.241 160.247 125.221 1 57.95 ? OAH 6EU 901 B 1 HETATM 3 C CBQ 6EU . . . I 2 137.004 158.868 125.129 1 57.95 ? CBQ 6EU 901 B 1 HETATM 4 C CBO 6EU . . . I 2 136.948 158.292 123.949 1 57.95 ? CBO 6EU 901 B 1 HETATM 5 C CBS 6EU . . . I 2 136.816 158.037 126.39 1 57.95 ? CBS 6EU 901 B 1 HETATM 6 O OAI 6EU . . . I 2 136.876 158.648 127.647 1 57.95 ? OAI 6EU 901 B 1 HETATM 7 C CBR 6EU . . . I 2 136.599 156.744 126.303 1 57.95 ? CBR 6EU 901 B 1 HETATM 8 C CBP 6EU . . . I 2 136.535 156.074 124.931 1 57.95 ? CBP 6EU 901 B 1 HETATM 9 C CBN 6EU . . . I 2 136.697 156.793 123.847 1 57.95 ? CBN 6EU 901 B 1 HETATM 10 C CBM 6EU . . . I 2 136.632 156.132 122.453 1 57.95 ? CBM 6EU 901 B 1 HETATM 11 C CBK 6EU . . . I 2 137.914 155.295 122.229 1 57.95 ? CBK 6EU 901 B 1 HETATM 12 O OAG 6EU . . . I 2 138.759 155.265 123.054 1 57.95 ? OAG 6EU 901 B 1 HETATM 13 O OAF 6EU . . . I 2 138.091 154.578 121.012 1 57.95 ? OAF 6EU 901 B 1 HETATM 14 C CBC 6EU . . . I 2 139.339 153.91 120.963 1 57.95 ? CBC 6EU 901 B 1 HETATM 15 C CAX 6EU . . . I 2 140.232 154.66 119.94 1 57.95 ? CAX 6EU 901 B 1 HETATM 16 C CAS 6EU . . . I 2 141.531 154.432 119.973 1 57.95 ? CAS 6EU 901 B 1 HETATM 17 C CAK 6EU . . . I 2 142.519 155.537 119.873 1 57.95 ? CAK 6EU 901 B 1 HETATM 18 C CAU 6EU . . . I 2 139.562 155.162 118.648 1 57.95 ? CAU 6EU 901 B 1 HETATM 19 C CAR 6EU . . . I 2 140.542 155.963 117.685 1 57.95 ? CAR 6EU 901 B 1 HETATM 20 O OAD 6EU . . . I 2 140.815 157.221 118.223 1 57.95 ? OAD 6EU 901 B 1 HETATM 21 C CAZ 6EU . . . I 2 139.906 156.145 116.387 1 57.95 ? CAZ 6EU 901 B 1 HETATM 22 O OAE 6EU . . . I 2 138.774 156.423 116.195 1 57.95 ? OAE 6EU 901 B 1 HETATM 23 C CBA 6EU . . . I 2 141.027 155.904 115.288 1 57.95 ? CBA 6EU 901 B 1 HETATM 24 C CBF 6EU . . . I 2 140.946 156.274 113.816 1 57.95 ? CBF 6EU 901 B 1 HETATM 25 C CAW 6EU . . . I 2 142.138 155.265 115.95 1 57.95 ? CAW 6EU 901 B 1 HETATM 26 C CAO 6EU . . . I 2 141.783 155.17 117.454 1 57.95 ? CAO 6EU 901 B 1 HETATM 27 C CAJ 6EU . . . I 2 142.954 155.673 118.296 1 57.95 ? CAJ 6EU 901 B 1 HETATM 28 O OAA 6EU . . . I 2 144.138 154.595 118.065 1 57.95 ? OAA 6EU 901 B 1 HETATM 29 C CAN 6EU . . . I 2 143.788 156.925 118.15 1 57.95 ? CAN 6EU 901 B 1 HETATM 30 C CAT 6EU . . . I 2 144.853 156.76 117.102 1 57.95 ? CAT 6EU 901 B 1 HETATM 31 C CAP 6EU . . . I 2 144.453 157.309 119.54 1 57.95 ? CAP 6EU 901 B 1 HETATM 32 C CAM 6EU . . . I 2 144.9 156.063 120.305 1 57.95 ? CAM 6EU 901 B 1 HETATM 33 C CAV 6EU . . . I 2 145.659 156.47 121.576 1 57.95 ? CAV 6EU 901 B 1 HETATM 34 C CBB 6EU . . . I 2 145.394 155.556 122.762 1 57.95 ? CBB 6EU 901 B 1 HETATM 35 C CBD 6EU . . . I 2 145.528 157.954 121.905 1 57.95 ? CBD 6EU 901 B 1 HETATM 36 O OAC 6EU . . . I 2 145.629 155.395 119.627 1 57.95 ? OAC 6EU 901 B 1 HETATM 37 C CAL 6EU . . . I 2 143.684 155.165 120.647 1 57.95 ? CAL 6EU 901 B 1 HETATM 38 O OAB 6EU . . . I 2 143.981 154.029 120.233 1 57.95 ? OAB 6EU 901 B 1 HETATM 39 C CAQ 6EU . . . I 2 144.813 154.25 119.241 1 57.95 ? CAQ 6EU 901 B 1 HETATM 40 C CAY 6EU . . . I 2 145.663 152.995 119.012 1 57.95 ? CAY 6EU 901 B 1 HETATM 41 C CBE 6EU . . . I 2 144.737 151.875 118.544 1 57.95 ? CBE 6EU 901 B 1 HETATM 42 C CBG 6EU . . . I 2 144.593 151.637 117.264 1 57.95 ? CBG 6EU 901 B 1 HETATM 43 C CBI 6EU . . . I 2 143.667 150.519 116.8 1 57.95 ? CBI 6EU 901 B 1 HETATM 44 C CBL 6EU . . . I 2 143.015 149.798 117.68 1 57.95 ? CBL 6EU 901 B 1 HETATM 45 C CBJ 6EU . . . I 2 143.182 150.076 119.165 1 57.95 ? CBJ 6EU 901 B 1 HETATM 46 C CBH 6EU . . . I 2 143.979 151.037 119.567 1 57.95 ? CBH 6EU 901 B 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 845 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 46 #