data_7MZE # _model_server_result.job_id ioJuiNoSK6uaKfTKvdiqHQ _model_server_result.datetime_utc '2024-11-04 23:05:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 7MZE # _exptl.entry_id 7MZE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 600.633 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MZE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 282 C CYS 386 1_555 D SG CYS 286 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A O GLY 516 A GLY 643 1_555 F NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 F NA NA . A NA 802 1_555 B O GLY 516 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc3 F NA NA . A NA 802 1_555 C O GLY 516 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc4 F NA NA . A NA 802 1_555 D O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'C26 H49 O13 P' _chem_comp.formula_weight 600.633 _chem_comp.id XJ7 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7MZE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 XJ7 A 1 801 801 XJ7 6ER . F 3 NA A 1 802 1 NA NA . G 4 6EU D 1 901 901 6EU 6EU . H 4 6EU B 1 901 901 6EU 6EU . I 2 XJ7 C 1 801 801 XJ7 6ER . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XJ7 . . . E 2 112.123 144.227 123.015 1 82.76 ? C10 XJ7 801 A 1 HETATM 2 O O11 XJ7 . . . E 2 109.971 142.171 131.509 1 82.76 ? O11 XJ7 801 A 1 HETATM 3 C C16 XJ7 . . . E 2 112.428 139.182 121.299 1 82.76 ? C16 XJ7 801 A 1 HETATM 4 C C17 XJ7 . . . E 2 112.762 139.823 119.957 1 82.76 ? C17 XJ7 801 A 1 HETATM 5 C C19 XJ7 . . . E 2 112.234 141.753 118.493 1 82.76 ? C19 XJ7 801 A 1 HETATM 6 C C20 XJ7 . . . E 2 111.747 141.033 117.243 1 82.76 ? C20 XJ7 801 A 1 HETATM 7 C C21 XJ7 . . . E 2 111.859 142 116.073 1 82.76 ? C21 XJ7 801 A 1 HETATM 8 C C23 XJ7 . . . E 2 111.316 142.349 113.678 1 82.76 ? C23 XJ7 801 A 1 HETATM 9 C C25 XJ7 . . . E 2 109.334 141.685 133.729 1 82.76 ? C25 XJ7 801 A 1 HETATM 10 C C1 XJ7 . . . E 2 106.95 140.828 134.104 1 82.76 ? C1 XJ7 801 A 1 HETATM 11 C C XJ7 . . . E 2 108.161 141.542 134.698 1 82.76 ? C XJ7 801 A 1 HETATM 12 O O XJ7 . . . E 2 107.765 142.802 135.143 1 82.76 ? O XJ7 801 A 1 HETATM 13 C C11 XJ7 . . . E 2 108.177 138.166 124.782 1 82.76 ? C11 XJ7 801 A 1 HETATM 14 C C12 XJ7 . . . E 2 109.41 137.406 124.326 1 82.76 ? C12 XJ7 801 A 1 HETATM 15 C C13 XJ7 . . . E 2 109.483 137.486 122.808 1 82.76 ? C13 XJ7 801 A 1 HETATM 16 C C14 XJ7 . . . E 2 110.943 137.56 122.389 1 82.76 ? C14 XJ7 801 A 1 HETATM 17 C C15 XJ7 . . . E 2 111.05 138.534 121.226 1 82.76 ? C15 XJ7 801 A 1 HETATM 18 C C18 XJ7 . . . E 2 111.776 140.958 119.707 1 82.76 ? C18 XJ7 801 A 1 HETATM 19 C C2 XJ7 . . . E 2 106.645 141.297 132.696 1 82.76 ? C2 XJ7 801 A 1 HETATM 20 C C22 XJ7 . . . E 2 111.222 141.369 114.842 1 82.76 ? C22 XJ7 801 A 1 HETATM 21 C C24 XJ7 . . . E 2 108.867 142.115 132.355 1 82.76 ? C24 XJ7 801 A 1 HETATM 22 C C3 XJ7 . . . E 2 107.891 141.067 131.86 1 82.76 ? C3 XJ7 801 A 1 HETATM 23 C C4 XJ7 . . . E 2 108.654 138.745 128.148 1 82.76 ? C4 XJ7 801 A 1 HETATM 24 C C5 XJ7 . . . E 2 109.278 138.844 126.762 1 82.76 ? C5 XJ7 801 A 1 HETATM 25 C C6 XJ7 . . . E 2 110.224 140.032 126.853 1 82.76 ? C6 XJ7 801 A 1 HETATM 26 C C7 XJ7 . . . E 2 111.571 141.297 125.393 1 82.76 ? C7 XJ7 801 A 1 HETATM 27 C C8 XJ7 . . . E 2 111.174 142.313 124.313 1 82.76 ? C8 XJ7 801 A 1 HETATM 28 C C9 XJ7 . . . E 2 112.387 143.209 124.12 1 82.76 ? C9 XJ7 801 A 1 HETATM 29 O O1 XJ7 . . . E 2 105.842 141.127 134.897 1 82.76 ? O1 XJ7 801 A 1 HETATM 30 O O10 XJ7 . . . E 2 107.137 137.945 124.267 1 82.76 ? O10 XJ7 801 A 1 HETATM 31 O O12 XJ7 . . . E 2 110.193 142.675 134.208 1 82.76 ? O12 XJ7 801 A 1 HETATM 32 O O2 XJ7 . . . E 2 105.512 140.61 132.249 1 82.76 ? O2 XJ7 801 A 1 HETATM 33 O O3 XJ7 . . . E 2 107.625 141.264 130.509 1 82.76 ? O3 XJ7 801 A 1 HETATM 34 O O4 XJ7 . . . E 2 106.904 138.824 130.498 1 82.76 ? O4 XJ7 801 A 1 HETATM 35 O O5 XJ7 . . . E 2 105.529 140.25 129.458 1 82.76 ? O5 XJ7 801 A 1 HETATM 36 O O6 XJ7 . . . E 2 107.715 139.778 128.261 1 82.76 ? O6 XJ7 801 A 1 HETATM 37 O O7 XJ7 . . . E 2 110.82 140.151 125.605 1 82.76 ? O7 XJ7 801 A 1 HETATM 38 O O8 XJ7 . . . E 2 112.537 141.421 126.049 1 82.76 ? O8 XJ7 801 A 1 HETATM 39 O O9 XJ7 . . . E 2 108.284 139.107 125.811 1 82.76 ? O9 XJ7 801 A 1 HETATM 40 P P XJ7 . . . E 2 106.944 140.024 129.686 1 82.76 ? P XJ7 801 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 501 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #