data_7MZE # _model_server_result.job_id i47kPqZ8EICUQ9RYlCFHgQ _model_server_result.datetime_utc '2024-11-04 23:07:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":901}' # _entry.id 7MZE # _exptl.entry_id 7MZE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 628.708 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description resiniferatoxin _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MZE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 282 C CYS 386 1_555 D SG CYS 286 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A O GLY 516 A GLY 643 1_555 F NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 F NA NA . A NA 802 1_555 B O GLY 516 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc3 F NA NA . A NA 802 1_555 C O GLY 516 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc4 F NA NA . A NA 802 1_555 D O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'C37 H40 O9' _chem_comp.formula_weight 628.708 _chem_comp.id 6EU _chem_comp.mon_nstd_flag . _chem_comp.name resiniferatoxin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RTX # _atom_sites.entry_id 7MZE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 XJ7 A 1 801 801 XJ7 6ER . F 3 NA A 1 802 1 NA NA . G 4 6EU D 1 901 901 6EU 6EU . H 4 6EU B 1 901 901 6EU 6EU . I 2 XJ7 C 1 801 801 XJ7 6ER . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBT 6EU . . . H 4 137.258 160.212 123.973 1 86.16 ? CBT 6EU 901 B 1 HETATM 2 O OAH 6EU . . . H 4 137.541 159.604 125.2 1 86.16 ? OAH 6EU 901 B 1 HETATM 3 C CBQ 6EU . . . H 4 137.324 158.214 125.188 1 86.16 ? CBQ 6EU 901 B 1 HETATM 4 C CBO 6EU . . . H 4 137.156 157.595 124.046 1 86.16 ? CBO 6EU 901 B 1 HETATM 5 C CBS 6EU . . . H 4 137.277 157.423 126.486 1 86.16 ? CBS 6EU 901 B 1 HETATM 6 O OAI 6EU . . . H 4 137.45 158.052 127.712 1 86.16 ? OAI 6EU 901 B 1 HETATM 7 C CBR 6EU . . . H 4 137.072 156.127 126.467 1 86.16 ? CBR 6EU 901 B 1 HETATM 8 C CBP 6EU . . . H 4 136.878 155.396 125.135 1 86.16 ? CBP 6EU 901 B 1 HETATM 9 C CBN 6EU . . . H 4 136.907 156.075 124.01 1 86.16 ? CBN 6EU 901 B 1 HETATM 10 C CBM 6EU . . . H 4 136.736 155.335 122.643 1 86.16 ? CBM 6EU 901 B 1 HETATM 11 C CBK 6EU . . . H 4 138.19 155.06 122.183 1 86.16 ? CBK 6EU 901 B 1 HETATM 12 O OAG 6EU . . . H 4 139.085 155.441 122.865 1 86.16 ? OAG 6EU 901 B 1 HETATM 13 O OAF 6EU . . . H 4 138.477 154.37 120.975 1 86.16 ? OAF 6EU 901 B 1 HETATM 14 C CBC 6EU . . . H 4 139.78 153.819 120.984 1 86.16 ? CBC 6EU 901 B 1 HETATM 15 C CAX 6EU . . . H 4 140.556 154.384 119.774 1 86.16 ? CAX 6EU 901 B 1 HETATM 16 C CAS 6EU . . . H 4 141.798 154.036 119.59 1 86.16 ? CAS 6EU 901 B 1 HETATM 17 C CAK 6EU . . . H 4 142.818 155.101 119.553 1 86.16 ? CAK 6EU 901 B 1 HETATM 18 C CAU 6EU . . . H 4 139.817 154.932 118.558 1 86.16 ? CAU 6EU 901 B 1 HETATM 19 C CAR 6EU . . . H 4 140.801 155.663 117.52 1 86.16 ? CAR 6EU 901 B 1 HETATM 20 O OAD 6EU . . . H 4 141.062 156.934 118.017 1 86.16 ? OAD 6EU 901 B 1 HETATM 21 C CAZ 6EU . . . H 4 140.06 155.796 116.297 1 86.16 ? CAZ 6EU 901 B 1 HETATM 22 O OAE 6EU . . . H 4 138.888 155.882 116.245 1 86.16 ? OAE 6EU 901 B 1 HETATM 23 C CBA 6EU . . . H 4 141.128 155.806 115.129 1 86.16 ? CBA 6EU 901 B 1 HETATM 24 C CBF 6EU . . . H 4 140.762 156.025 113.683 1 86.16 ? CBF 6EU 901 B 1 HETATM 25 C CAW 6EU . . . H 4 142.3 155.132 115.648 1 86.16 ? CAW 6EU 901 B 1 HETATM 26 C CAO 6EU . . . H 4 142.035 154.888 117.159 1 86.16 ? CAO 6EU 901 B 1 HETATM 27 C CAJ 6EU . . . H 4 143.232 155.333 117.991 1 86.16 ? CAJ 6EU 901 B 1 HETATM 28 O OAA 6EU . . . H 4 144.316 154.484 117.671 1 86.16 ? OAA 6EU 901 B 1 HETATM 29 C CAN 6EU . . . H 4 143.959 156.652 117.996 1 86.16 ? CAN 6EU 901 B 1 HETATM 30 C CAT 6EU . . . H 4 145.024 156.699 116.947 1 86.16 ? CAT 6EU 901 B 1 HETATM 31 C CAP 6EU . . . H 4 144.604 156.913 119.42 1 86.16 ? CAP 6EU 901 B 1 HETATM 32 C CAM 6EU . . . H 4 145.115 155.63 120.082 1 86.16 ? CAM 6EU 901 B 1 HETATM 33 C CAV 6EU . . . H 4 145.824 155.925 121.408 1 86.16 ? CAV 6EU 901 B 1 HETATM 34 C CBB 6EU . . . H 4 145.316 155.121 122.595 1 86.16 ? CBB 6EU 901 B 1 HETATM 35 C CBD 6EU . . . H 4 145.97 157.415 121.698 1 86.16 ? CBD 6EU 901 B 1 HETATM 36 O OAC 6EU . . . H 4 145.863 155.089 119.327 1 86.16 ? OAC 6EU 901 B 1 HETATM 37 C CAL 6EU . . . H 4 143.955 154.631 120.295 1 86.16 ? CAL 6EU 901 B 1 HETATM 38 O OAB 6EU . . . H 4 144.31 153.584 119.736 1 86.16 ? OAB 6EU 901 B 1 HETATM 39 C CAQ 6EU . . . H 4 145.068 154.012 118.758 1 86.16 ? CAQ 6EU 901 B 1 HETATM 40 C CAY 6EU . . . H 4 145.994 152.894 118.292 1 86.16 ? CAY 6EU 901 B 1 HETATM 41 C CBE 6EU . . . H 4 145.192 151.642 117.954 1 86.16 ? CBE 6EU 901 B 1 HETATM 42 C CBG 6EU . . . H 4 144.524 151.599 116.834 1 86.16 ? CBG 6EU 901 B 1 HETATM 43 C CBI 6EU . . . H 4 143.728 150.352 116.478 1 86.16 ? CBI 6EU 901 B 1 HETATM 44 C CBL 6EU . . . H 4 143.725 149.326 117.3 1 86.16 ? CBL 6EU 901 B 1 HETATM 45 C CBJ 6EU . . . H 4 144.507 149.372 118.602 1 86.16 ? CBJ 6EU 901 B 1 HETATM 46 C CBH 6EU . . . H 4 145.19 150.442 118.91 1 86.16 ? CBH 6EU 901 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 46 #