data_7MZF # _model_server_result.job_id FbmemKg60W3JQobbPwFSDw _model_server_result.datetime_utc '2024-10-12 01:28:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mzf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7MZF # _exptl.entry_id 7MZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7MZF _cell.length_a 83.919 _cell.length_b 147.665 _cell.length_c 146.099 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG A 530 NAG 4 n D NAG 2 B 2 NAG A 532 NAG 4 n D FUC 3 B 3 FUC A 531 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 336 1_555 A SG CYS 31 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 49 A CYS 379 1_555 A SG CYS 102 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 61 A CYS 391 1_555 A SG CYS 195 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 150 A CYS 480 1_555 A SG CYS 158 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 B SG CYS 144 H CYS 144 1_555 B SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf8 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 13 A ASN 343 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale3 D O6 NAG . B NAG 1 1_555 D C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 356 n n S O2 SO4 doub 357 n n S O3 SO4 sing 358 n n S O4 SO4 sing 359 n n # _atom_sites.entry_id 7MZF _atom_sites.fract_transf_matrix[1][1] 0.011916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SO4 A 1 601 1 SO4 SO4 . F 6 CL A 1 602 1 CL CL . G 7 GOL L 1 301 2 GOL GOL . H 8 HOH A 1 701 100 HOH HOH . H 8 HOH A 2 702 55 HOH HOH . H 8 HOH A 3 703 155 HOH HOH . H 8 HOH A 4 704 107 HOH HOH . H 8 HOH A 5 705 13 HOH HOH . H 8 HOH A 6 706 202 HOH HOH . H 8 HOH A 7 707 255 HOH HOH . H 8 HOH A 8 708 158 HOH HOH . H 8 HOH A 9 709 108 HOH HOH . H 8 HOH A 10 710 3 HOH HOH . H 8 HOH A 11 711 2 HOH HOH . H 8 HOH A 12 712 163 HOH HOH . H 8 HOH A 13 713 1 HOH HOH . H 8 HOH A 14 714 105 HOH HOH . H 8 HOH A 15 715 249 HOH HOH . H 8 HOH A 16 716 11 HOH HOH . H 8 HOH A 17 717 82 HOH HOH . H 8 HOH A 18 718 9 HOH HOH . H 8 HOH A 19 719 188 HOH HOH . H 8 HOH A 20 720 31 HOH HOH . H 8 HOH A 21 721 12 HOH HOH . H 8 HOH A 22 722 22 HOH HOH . H 8 HOH A 23 723 114 HOH HOH . H 8 HOH A 24 724 228 HOH HOH . H 8 HOH A 25 725 27 HOH HOH . H 8 HOH A 26 726 96 HOH HOH . H 8 HOH A 27 727 98 HOH HOH . H 8 HOH A 28 728 213 HOH HOH . H 8 HOH A 29 729 116 HOH HOH . H 8 HOH A 30 730 159 HOH HOH . H 8 HOH A 31 731 66 HOH HOH . H 8 HOH A 32 732 112 HOH HOH . H 8 HOH A 33 733 110 HOH HOH . H 8 HOH A 34 734 109 HOH HOH . H 8 HOH A 35 735 167 HOH HOH . H 8 HOH A 36 736 115 HOH HOH . H 8 HOH A 37 737 42 HOH HOH . H 8 HOH A 38 738 190 HOH HOH . H 8 HOH A 39 739 201 HOH HOH . H 8 HOH A 40 740 241 HOH HOH . H 8 HOH A 41 741 156 HOH HOH . H 8 HOH A 42 742 234 HOH HOH . H 8 HOH A 43 743 257 HOH HOH . H 8 HOH A 44 744 16 HOH HOH . H 8 HOH A 45 745 95 HOH HOH . H 8 HOH A 46 746 53 HOH HOH . H 8 HOH A 47 747 68 HOH HOH . H 8 HOH A 48 748 203 HOH HOH . H 8 HOH A 49 749 162 HOH HOH . H 8 HOH A 50 750 191 HOH HOH . H 8 HOH A 51 751 101 HOH HOH . H 8 HOH A 52 752 208 HOH HOH . H 8 HOH A 53 753 47 HOH HOH . H 8 HOH A 54 754 57 HOH HOH . H 8 HOH A 55 755 192 HOH HOH . I 8 HOH H 1 301 124 HOH HOH . I 8 HOH H 2 302 18 HOH HOH . I 8 HOH H 3 303 260 HOH HOH . I 8 HOH H 4 304 54 HOH HOH . I 8 HOH H 5 305 180 HOH HOH . I 8 HOH H 6 306 20 HOH HOH . I 8 HOH H 7 307 28 HOH HOH . I 8 HOH H 8 308 224 HOH HOH . I 8 HOH H 9 309 24 HOH HOH . I 8 HOH H 10 310 132 HOH HOH . I 8 HOH H 11 311 118 HOH HOH . I 8 HOH H 12 312 123 HOH HOH . I 8 HOH H 13 313 200 HOH HOH . I 8 HOH H 14 314 86 HOH HOH . I 8 HOH H 15 315 58 HOH HOH . I 8 HOH H 16 316 5 HOH HOH . I 8 HOH H 17 317 122 HOH HOH . I 8 HOH H 18 318 14 HOH HOH . I 8 HOH H 19 319 125 HOH HOH . I 8 HOH H 20 320 205 HOH HOH . I 8 HOH H 21 321 214 HOH HOH . I 8 HOH H 22 322 39 HOH HOH . I 8 HOH H 23 323 76 HOH HOH . I 8 HOH H 24 324 32 HOH HOH . I 8 HOH H 25 325 121 HOH HOH . I 8 HOH H 26 326 130 HOH HOH . I 8 HOH H 27 327 231 HOH HOH . I 8 HOH H 28 328 41 HOH HOH . I 8 HOH H 29 329 259 HOH HOH . I 8 HOH H 30 330 48 HOH HOH . I 8 HOH H 31 331 43 HOH HOH . I 8 HOH H 32 332 131 HOH HOH . I 8 HOH H 33 333 119 HOH HOH . I 8 HOH H 34 334 179 HOH HOH . I 8 HOH H 35 335 46 HOH HOH . I 8 HOH H 36 336 237 HOH HOH . I 8 HOH H 37 337 33 HOH HOH . I 8 HOH H 38 338 25 HOH HOH . I 8 HOH H 39 339 74 HOH HOH . I 8 HOH H 40 340 175 HOH HOH . I 8 HOH H 41 341 51 HOH HOH . I 8 HOH H 42 342 81 HOH HOH . I 8 HOH H 43 343 50 HOH HOH . I 8 HOH H 44 344 69 HOH HOH . I 8 HOH H 45 345 111 HOH HOH . I 8 HOH H 46 346 37 HOH HOH . I 8 HOH H 47 347 80 HOH HOH . I 8 HOH H 48 348 120 HOH HOH . I 8 HOH H 49 349 176 HOH HOH . I 8 HOH H 50 350 44 HOH HOH . I 8 HOH H 51 351 128 HOH HOH . I 8 HOH H 52 352 178 HOH HOH . I 8 HOH H 53 353 185 HOH HOH . I 8 HOH H 54 354 113 HOH HOH . I 8 HOH H 55 355 194 HOH HOH . I 8 HOH H 56 356 204 HOH HOH . I 8 HOH H 57 357 19 HOH HOH . I 8 HOH H 58 358 174 HOH HOH . I 8 HOH H 59 359 71 HOH HOH . I 8 HOH H 60 360 65 HOH HOH . I 8 HOH H 61 361 177 HOH HOH . I 8 HOH H 62 362 151 HOH HOH . I 8 HOH H 63 363 26 HOH HOH . I 8 HOH H 64 364 62 HOH HOH . I 8 HOH H 65 365 77 HOH HOH . I 8 HOH H 66 366 133 HOH HOH . I 8 HOH H 67 367 89 HOH HOH . I 8 HOH H 68 368 87 HOH HOH . J 8 HOH L 1 401 227 HOH HOH . J 8 HOH L 2 402 150 HOH HOH . J 8 HOH L 3 403 29 HOH HOH . J 8 HOH L 4 404 140 HOH HOH . J 8 HOH L 5 405 35 HOH HOH . J 8 HOH L 6 406 7 HOH HOH . J 8 HOH L 7 407 182 HOH HOH . J 8 HOH L 8 408 138 HOH HOH . J 8 HOH L 9 409 226 HOH HOH . J 8 HOH L 10 410 126 HOH HOH . J 8 HOH L 11 411 17 HOH HOH . J 8 HOH L 12 412 10 HOH HOH . J 8 HOH L 13 413 233 HOH HOH . J 8 HOH L 14 414 152 HOH HOH . J 8 HOH L 15 415 73 HOH HOH . J 8 HOH L 16 416 242 HOH HOH . J 8 HOH L 17 417 225 HOH HOH . J 8 HOH L 18 418 30 HOH HOH . J 8 HOH L 19 419 38 HOH HOH . J 8 HOH L 20 420 63 HOH HOH . J 8 HOH L 21 421 21 HOH HOH . J 8 HOH L 22 422 90 HOH HOH . J 8 HOH L 23 423 210 HOH HOH . J 8 HOH L 24 424 88 HOH HOH . J 8 HOH L 25 425 193 HOH HOH . J 8 HOH L 26 426 52 HOH HOH . J 8 HOH L 27 427 216 HOH HOH . J 8 HOH L 28 428 145 HOH HOH . J 8 HOH L 29 429 60 HOH HOH . J 8 HOH L 30 430 235 HOH HOH . J 8 HOH L 31 431 134 HOH HOH . J 8 HOH L 32 432 40 HOH HOH . J 8 HOH L 33 433 75 HOH HOH . J 8 HOH L 34 434 238 HOH HOH . J 8 HOH L 35 435 250 HOH HOH . J 8 HOH L 36 436 36 HOH HOH . J 8 HOH L 37 437 85 HOH HOH . J 8 HOH L 38 438 56 HOH HOH . J 8 HOH L 39 439 247 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 5 9.713 2.345 7.661 1 115.87 ? S SO4 601 A 1 HETATM 2 O O1 SO4 . . . E 5 10.275 1.007 7.465 1 99.56 ? O1 SO4 601 A 1 HETATM 3 O O2 SO4 . . . E 5 8.666 2.578 6.665 1 97.72 ? O2 SO4 601 A 1 HETATM 4 O O3 SO4 . . . E 5 10.764 3.347 7.485 1 80.24 ? O3 SO4 601 A 1 HETATM 5 O O4 SO4 . . . E 5 9.155 2.444 9.012 1 79.53 ? O4 SO4 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #