data_7N27 # _model_server_result.job_id ht5pwZydWn2rMz_ht-Vuhw _model_server_result.datetime_utc '2024-11-22 07:06:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":201}' # _entry.id 7N27 # _exptl.entry_id 7N27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N27 _cell.length_a 62.971 _cell.length_b 76.386 _cell.length_c 80.628 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,M,Q,R 1 1 C,D,S,T 2 1 E,F,U 3 1 G,H,N,O,V,W 4 1 I,J,X,Y 5 1 K,L,P,Z,AA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C MN1 1 G MN1 1000 1_555 B N PF5 2 G PF5 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 B C PF5 2 G PF5 1001 1_555 B N ALA 3 G ALA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 B C PHE 4 G PHE 1003 1_555 B N ZT1 5 G ZT1 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C ZT1 5 G ZT1 1004 1_555 B N ALA 6 G ALA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale5 D C MN1 1 H MN1 1000 1_555 D N PF5 2 H PF5 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 D C PF5 2 H PF5 1001 1_555 D N ALA 3 H ALA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 D C PHE 4 H PHE 1003 1_555 D N ZT1 5 H ZT1 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 D C ZT1 5 H ZT1 1004 1_555 D N ALA 6 H ALA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale9 F C MN1 1 I MN1 1000 1_555 F N PF5 2 I PF5 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale10 F C PF5 2 I PF5 1001 1_555 F N ALA 3 I ALA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale11 F C PHE 4 I PHE 1003 1_555 F N ZT1 5 I ZT1 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale12 F C ZT1 5 I ZT1 1004 1_555 F N ALA 6 I ALA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale13 H C MN1 1 J MN1 1000 1_555 H N PF5 2 J PF5 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale14 H C PF5 2 J PF5 1001 1_555 H N ALA 3 J ALA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale15 H C PHE 4 J PHE 1003 1_555 H N ZT1 5 J ZT1 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale16 H C ZT1 5 J ZT1 1004 1_555 H N ALA 6 J ALA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale17 J C MN1 1 K MN1 1000 1_555 J N PF5 2 K PF5 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale18 J C PF5 2 K PF5 1001 1_555 J N ALA 3 K ALA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale19 J C PHE 4 K PHE 1003 1_555 J N ZT1 5 K ZT1 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale20 J C ZT1 5 K ZT1 1004 1_555 J N ALA 6 K ALA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale21 L C MN1 1 L MN1 1000 1_555 L N PF5 2 L PF5 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale22 L C PF5 2 L PF5 1001 1_555 L N ALA 3 L ALA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale23 L C PHE 4 L PHE 1003 1_555 L N ZT1 5 L ZT1 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale24 L C ZT1 5 L ZT1 1004 1_555 L N ALA 6 L ALA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 A O GLU 33 A GLU 89 1_555 M NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc2 M NA NA . A NA 201 2_565 E O VAL 7 C VAL 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc3 M NA NA . A NA 201 2_565 E OH TYR 49 C TYR 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc4 M NA NA . A NA 201 1_555 U O HOH . C HOH 201 2_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc5 M NA NA . A NA 201 1_555 U O HOH . C HOH 205 2_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 C O GLU 33 B GLU 89 1_555 N NA NA . D NA 201 2_575 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc7 S O HOH . B HOH 210 2_574 N NA NA . D NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc8 G O VAL 7 D VAL 63 1_555 N NA NA . D NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc9 G OH TYR 49 D TYR 105 1_555 N NA NA . D NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc10 N NA NA . D NA 201 1_555 V O HOH . D HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc11 N NA NA . D NA 201 1_555 V O HOH . D HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7N27 _atom_sites.fract_transf_matrix[1][1] 0.01588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 NA A 1 201 2 NA NA . N 3 NA D 1 201 1 NA NA . O 4 UNX D 1 202 1 UNX UNX . P 4 UNX F 1 201 2 UNX UNX . Q 5 HOH A 1 301 29 HOH HOH . Q 5 HOH A 2 302 28 HOH HOH . Q 5 HOH A 3 303 26 HOH HOH . Q 5 HOH A 4 304 47 HOH HOH . Q 5 HOH A 5 305 18 HOH HOH . Q 5 HOH A 6 306 25 HOH HOH . Q 5 HOH A 7 307 52 HOH HOH . Q 5 HOH A 8 308 19 HOH HOH . Q 5 HOH A 9 309 21 HOH HOH . Q 5 HOH A 10 310 20 HOH HOH . Q 5 HOH A 11 311 48 HOH HOH . Q 5 HOH A 12 312 30 HOH HOH . Q 5 HOH A 13 313 13 HOH HOH . R 5 HOH G 1 1101 51 HOH HOH . S 5 HOH B 1 201 61 HOH HOH . S 5 HOH B 2 202 55 HOH HOH . S 5 HOH B 3 203 15 HOH HOH . S 5 HOH B 4 204 8 HOH HOH . S 5 HOH B 5 205 9 HOH HOH . S 5 HOH B 6 206 56 HOH HOH . S 5 HOH B 7 207 7 HOH HOH . S 5 HOH B 8 208 10 HOH HOH . S 5 HOH B 9 209 53 HOH HOH . S 5 HOH B 10 210 3 HOH HOH . S 5 HOH B 11 211 58 HOH HOH . S 5 HOH B 12 212 46 HOH HOH . S 5 HOH B 13 213 59 HOH HOH . S 5 HOH B 14 214 32 HOH HOH . S 5 HOH B 15 215 24 HOH HOH . S 5 HOH B 16 216 60 HOH HOH . S 5 HOH B 17 217 68 HOH HOH . T 5 HOH H 1 1101 4 HOH HOH . U 5 HOH C 1 201 31 HOH HOH . U 5 HOH C 2 202 54 HOH HOH . U 5 HOH C 3 203 33 HOH HOH . U 5 HOH C 4 204 62 HOH HOH . U 5 HOH C 5 205 67 HOH HOH . U 5 HOH C 6 206 34 HOH HOH . V 5 HOH D 1 301 14 HOH HOH . V 5 HOH D 2 302 65 HOH HOH . V 5 HOH D 3 303 27 HOH HOH . V 5 HOH D 4 304 64 HOH HOH . V 5 HOH D 5 305 36 HOH HOH . V 5 HOH D 6 306 69 HOH HOH . V 5 HOH D 7 307 45 HOH HOH . V 5 HOH D 8 308 38 HOH HOH . V 5 HOH D 9 309 17 HOH HOH . V 5 HOH D 10 310 37 HOH HOH . V 5 HOH D 11 311 5 HOH HOH . V 5 HOH D 12 312 22 HOH HOH . V 5 HOH D 13 313 35 HOH HOH . V 5 HOH D 14 314 50 HOH HOH . V 5 HOH D 15 315 2 HOH HOH . V 5 HOH D 16 316 1 HOH HOH . W 5 HOH J 1 1101 57 HOH HOH . W 5 HOH J 2 1102 11 HOH HOH . X 5 HOH E 1 201 39 HOH HOH . X 5 HOH E 2 202 40 HOH HOH . X 5 HOH E 3 203 41 HOH HOH . Y 5 HOH K 1 1101 6 HOH HOH . Z 5 HOH F 1 301 63 HOH HOH . Z 5 HOH F 2 302 66 HOH HOH . Z 5 HOH F 3 303 42 HOH HOH . Z 5 HOH F 4 304 43 HOH HOH . Z 5 HOH F 5 305 49 HOH HOH . Z 5 HOH F 6 306 44 HOH HOH . Z 5 HOH F 7 307 23 HOH HOH . Z 5 HOH F 8 308 16 HOH HOH . AA 5 HOH L 1 1101 12 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 3 _atom_site.Cartn_x 11.617 _atom_site.Cartn_y 15.66 _atom_site.Cartn_z 19.9 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #