data_7N2A # _model_server_result.job_id h2nvgW8rDsjtKKKSGr-aEA _model_server_result.datetime_utc '2025-04-09 16:46:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7N2A # _exptl.entry_id 7N2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.471 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-benzyl-2-(3-fluoro-2-hydroxyphenyl)-6-methyl-3-(2-phenylethyl)pyrimidin-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N2A _cell.length_a 91.512 _cell.length_b 91.512 _cell.length_c 85.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H23 F N2 O2' _chem_comp.formula_weight 414.471 _chem_comp.id 07F _chem_comp.mon_nstd_flag . _chem_comp.name 5-benzyl-2-(3-fluoro-2-hydroxyphenyl)-6-methyl-3-(2-phenylethyl)pyrimidin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C25 07F doub 1 n y C24 C23 07F sing 2 n y C25 C26 07F sing 3 n y C23 C22 07F doub 4 n y C26 C21 07F doub 5 n y C22 C21 07F sing 6 n y C21 C20 07F sing 7 n n C16 C15 07F doub 8 n y C16 C17 07F sing 9 n y C15 C14 07F sing 10 n y C17 C12 07F doub 11 n y C20 C19 07F sing 12 n n C1 C2 07F sing 13 n n C14 C13 07F doub 14 n y C12 C13 07F sing 15 n y C12 C11 07F sing 16 n n C19 C2 07F doub 17 n n C19 C18 07F sing 18 n n C2 N1 07F sing 19 n n C5 C6 07F doub 20 n y C5 C4 07F sing 21 n y C11 C10 07F sing 22 n n N1 C3 07F doub 23 n n C18 O2 07F doub 24 n n C18 N2 07F sing 25 n n N2 C3 07F sing 26 n n N2 C10 07F sing 27 n n C3 C4 07F sing 28 n n C6 C7 07F sing 29 n y C4 C9 07F doub 30 n y C7 C8 07F doub 31 n y C9 C8 07F sing 32 n y C9 O1 07F sing 33 n n C8 F1 07F sing 34 n n C5 H1 07F sing 35 n n C6 H2 07F sing 36 n n C7 H3 07F sing 37 n n C10 H4 07F sing 38 n n C10 H5 07F sing 39 n n C13 H6 07F sing 40 n n C15 H7 07F sing 41 n n C17 H8 07F sing 42 n n C20 H9 07F sing 43 n n C20 H10 07F sing 44 n n C22 H11 07F sing 45 n n C24 H12 07F sing 46 n n C26 H13 07F sing 47 n n C1 H14 07F sing 48 n n C1 H15 07F sing 49 n n C1 H16 07F sing 50 n n O1 H17 07F sing 51 n n C11 H18 07F sing 52 n n C11 H19 07F sing 53 n n C14 H20 07F sing 54 n n C16 H21 07F sing 55 n n C23 H22 07F sing 56 n n C25 H23 07F sing 57 n n # _atom_sites.entry_id 7N2A _atom_sites.fract_transf_matrix[1][1] 0.010928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 07F A 1 501 1 07F LIG . C 3 HOH A 1 601 12 HOH HOH . C 3 HOH A 2 602 35 HOH HOH . C 3 HOH A 3 603 19 HOH HOH . C 3 HOH A 4 604 18 HOH HOH . C 3 HOH A 5 605 33 HOH HOH . C 3 HOH A 6 606 61 HOH HOH . C 3 HOH A 7 607 41 HOH HOH . C 3 HOH A 8 608 62 HOH HOH . C 3 HOH A 9 609 65 HOH HOH . C 3 HOH A 10 610 13 HOH HOH . C 3 HOH A 11 611 37 HOH HOH . C 3 HOH A 12 612 24 HOH HOH . C 3 HOH A 13 613 47 HOH HOH . C 3 HOH A 14 614 1 HOH HOH . C 3 HOH A 15 615 57 HOH HOH . C 3 HOH A 16 616 39 HOH HOH . C 3 HOH A 17 617 22 HOH HOH . C 3 HOH A 18 618 4 HOH HOH . C 3 HOH A 19 619 7 HOH HOH . C 3 HOH A 20 620 2 HOH HOH . C 3 HOH A 21 621 15 HOH HOH . C 3 HOH A 22 622 68 HOH HOH . C 3 HOH A 23 623 8 HOH HOH . C 3 HOH A 24 624 28 HOH HOH . C 3 HOH A 25 625 53 HOH HOH . C 3 HOH A 26 626 74 HOH HOH . C 3 HOH A 27 627 6 HOH HOH . C 3 HOH A 28 628 10 HOH HOH . C 3 HOH A 29 629 63 HOH HOH . C 3 HOH A 30 630 21 HOH HOH . C 3 HOH A 31 631 64 HOH HOH . C 3 HOH A 32 632 59 HOH HOH . C 3 HOH A 33 633 66 HOH HOH . C 3 HOH A 34 634 73 HOH HOH . C 3 HOH A 35 635 70 HOH HOH . C 3 HOH A 36 636 11 HOH HOH . C 3 HOH A 37 637 69 HOH HOH . C 3 HOH A 38 638 40 HOH HOH . C 3 HOH A 39 639 72 HOH HOH . C 3 HOH A 40 640 54 HOH HOH . C 3 HOH A 41 641 60 HOH HOH . C 3 HOH A 42 642 67 HOH HOH . C 3 HOH A 43 643 17 HOH HOH . C 3 HOH A 44 644 58 HOH HOH . C 3 HOH A 45 645 71 HOH HOH . C 3 HOH A 46 646 56 HOH HOH . C 3 HOH A 47 647 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 07F . . . B 2 -16.745 -13.025 -22.089 1 83.71 ? N1 07F 501 A 1 HETATM 2 C C4 07F . . . B 2 -14.635 -12.528 -21.227 1 83.15 ? C4 07F 501 A 1 HETATM 3 C C5 07F . . . B 2 -13.728 -13.026 -22.133 1 83.11 ? C5 07F 501 A 1 HETATM 4 C C6 07F . . . B 2 -12.497 -13.456 -21.686 1 82.98 ? C6 07F 501 A 1 HETATM 5 C C7 07F . . . B 2 -12.181 -13.393 -20.346 1 82.86 ? C7 07F 501 A 1 HETATM 6 C C8 07F . . . B 2 -13.1 -12.898 -19.448 1 82.72 ? C8 07F 501 A 1 HETATM 7 C C10 07F . . . B 2 -15.403 -9.717 -21.136 1 83.63 ? C10 07F 501 A 1 HETATM 8 C C13 07F . . . B 2 -12.625 -8.011 -22.2 1 84.24 ? C13 07F 501 A 1 HETATM 9 C C15 07F . . . B 2 -11.058 -9.352 -23.396 1 84.25 ? C15 07F 501 A 1 HETATM 10 C C17 07F . . . B 2 -13.355 -9.977 -23.338 1 84.16 ? C17 07F 501 A 1 HETATM 11 C C20 07F . . . B 2 -19.755 -10.965 -23.064 1 84.33 ? C20 07F 501 A 1 HETATM 12 C C21 07F . . . B 2 -19.629 -10.606 -24.498 1 84.6 ? C21 07F 501 A 1 HETATM 13 C C22 07F . . . B 2 -19.143 -9.373 -24.865 1 84.72 ? C22 07F 501 A 1 HETATM 14 C C24 07F . . . B 2 -19.39 -9.957 -27.157 1 84.64 ? C24 07F 501 A 1 HETATM 15 C C26 07F . . . B 2 -19.992 -11.515 -25.46 1 84.71 ? C26 07F 501 A 1 HETATM 16 C C1 07F . . . B 2 -18.802 -13.752 -23.057 1 83.98 ? C1 07F 501 A 1 HETATM 17 C C2 07F . . . B 2 -17.966 -12.637 -22.548 1 83.9 ? C2 07F 501 A 1 HETATM 18 C C3 07F . . . B 2 -15.942 -12.084 -21.714 1 83.43 ? C3 07F 501 A 1 HETATM 19 F F1 07F . . . B 2 -12.793 -12.835 -18.144 1 81.92 ? F1 07F 501 A 1 HETATM 20 C C9 07F . . . B 2 -14.33 -12.47 -19.887 1 82.75 ? C9 07F 501 A 1 HETATM 21 O O1 07F . . . B 2 -15.247 -11.973 -18.991 1 82.29 ? O1 07F 501 A 1 HETATM 22 N N2 07F . . . B 2 -16.246 -10.729 -21.746 1 83.46 ? N2 07F 501 A 1 HETATM 23 C C11 07F . . . B 2 -15.024 -8.627 -22.114 1 84.02 ? C11 07F 501 A 1 HETATM 24 C C12 07F . . . B 2 -13.631 -8.875 -22.561 1 84.21 ? C12 07F 501 A 1 HETATM 25 C C14 07F . . . B 2 -11.339 -8.252 -22.619 1 84.2 ? C14 07F 501 A 1 HETATM 26 C C16 07F . . . B 2 -12.067 -10.217 -23.755 1 84.32 ? C16 07F 501 A 1 HETATM 27 C C18 07F . . . B 2 -17.533 -10.328 -22.039 1 83.49 ? C18 07F 501 A 1 HETATM 28 O O2 07F . . . B 2 -17.957 -9.19 -21.906 1 82.86 ? O2 07F 501 A 1 HETATM 29 C C19 07F . . . B 2 -18.423 -11.381 -22.556 1 83.92 ? C19 07F 501 A 1 HETATM 30 C C23 07F . . . B 2 -19.024 -9.047 -26.195 1 84.75 ? C23 07F 501 A 1 HETATM 31 C C25 07F . . . B 2 -19.874 -11.191 -26.79 1 84.67 ? C25 07F 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #