data_7N2M # _model_server_result.job_id AFjHorubyJJLdg0S1hn2Eg _model_server_result.datetime_utc '2024-11-22 22:05:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n2m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1304}' # _entry.id 7N2M # _exptl.entry_id 7N2M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7N2M _cell.length_a 140.285 _cell.length_b 140.285 _cell.length_c 181.066 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N2M _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 K N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 7 A HIS 342 1_555 G ZN ZN . A ZN 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc2 A NE2 HIS 7 A HIS 342 1_555 G ZN ZN . A ZN 1304 6_765 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc3 A OE1 GLU 165 A GLU 500 1_555 G ZN ZN . A ZN 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc4 A OE1 GLU 165 A GLU 500 1_555 G ZN ZN . A ZN 1304 6_765 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc5 A OD2 ASP 525 A ASP 860 1_555 E MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? metalc ? metalc6 A OD1 ASP 525 A ASP 860 1_555 F ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 A O PHE 526 A PHE 861 1_555 E MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc8 A OD1 ASP 669 A ASP 1004 1_555 E MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc9 A OD2 ASP 669 A ASP 1004 1_555 F ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc10 A O CYS 889 A CYS 1224 1_555 H K K . A K 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? metalc ? metalc11 A O GLU 890 A GLU 1225 1_555 H K K . A K 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc12 A O ILE 892 A ILE 1227 1_555 H K K . A K 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc13 A O ILE 895 A ILE 1230 1_555 H K K . A K 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc14 D O1A DCP . A DCP 1301 1_555 E MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc15 D O1B DCP . A DCP 1301 1_555 E MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc16 D O3G DCP . A DCP 1301 1_555 E MG MG . A MG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc17 D O1A DCP . A DCP 1301 1_555 F ZN ZN . A ZN 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc18 B N7 G 6 B G 6 1_555 K ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? hydrog WATSON-CRICK hydrog1 B N1 G 1 B G 1 1_555 C N3 DC 15 C DC 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 G 1 B G 1 1_555 C O2 DC 15 C DC 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 G 1 B G 1 1_555 C N4 DC 15 C DC 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 C 2 B C 2 1_555 C N1 DG 14 C DG 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 C 2 B C 2 1_555 C O6 DG 14 C DG 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 C 2 B C 2 1_555 C N2 DG 14 C DG 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 C 3 B C 3 1_555 C N1 DG 13 C DG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 C 3 B C 3 1_555 C O6 DG 13 C DG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 C 3 B C 3 1_555 C N2 DG 13 C DG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 U 4 B U 4 1_555 C N1 DA 12 C DA 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 U 4 B U 4 1_555 C N6 DA 12 C DA 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 G 5 B G 5 1_555 C N3 DC 11 C DC 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N2 G 5 B G 5 1_555 C O2 DC 11 C DC 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O6 G 5 B G 5 1_555 C N4 DC 11 C DC 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 G 6 B G 6 1_555 C N3 DC 10 C DC 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N2 G 6 B G 6 1_555 C O2 DC 10 C DC 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O6 G 6 B G 6 1_555 C N4 DC 10 C DC 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 A 7 B A 7 1_555 C N3 DT 9 C DT 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N6 A 7 B A 7 1_555 C O4 DT 9 C DT 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 G 8 B G 8 1_555 C N3 DC 8 C DC 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N2 G 8 B G 8 1_555 C O2 DC 8 C DC 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O6 G 8 B G 8 1_555 C N4 DC 8 C DC 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N3 C 9 B C 9 1_555 C N1 DG 7 C DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N4 C 9 B C 9 1_555 C O6 DG 7 C DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O2 C 9 B C 9 1_555 C N2 DG 7 C DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 G 10 B G 10 1_555 C N3 DC 6 C DC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N2 G 10 B G 10 1_555 C O2 DC 6 C DC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O6 G 10 B G 10 1_555 C N4 DC 6 C DC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-DT MISPAIR' hydrog29 B N4 C 11 B C 11 1_555 C O4 DT 5 C DT 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7N2M _atom_sites.fract_transf_matrix[1][1] 0.007128 _atom_sites.fract_transf_matrix[1][2] 0.004116 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DCP A 1 1301 201 DCP DCP . E 5 MG A 1 1302 301 MG MG2 . F 6 ZN A 1 1303 302 ZN ZN2 . G 6 ZN A 1 1304 401 ZN ZN2 . H 7 K A 1 1305 701 K K1 . I 8 1PE A 1 1306 901 1PE PG5 . J 9 SO4 A 1 1307 801 SO4 SO4 . K 6 ZN B 1 501 501 ZN ZN2 . L 6 ZN C 1 601 601 ZN ZN2 . M 10 HOH A 1 1401 66 HOH HOH . M 10 HOH A 2 1402 49 HOH HOH . M 10 HOH A 3 1403 61 HOH HOH . M 10 HOH A 4 1404 4 HOH HOH . M 10 HOH A 5 1405 87 HOH HOH . M 10 HOH A 6 1406 8 HOH HOH . M 10 HOH A 7 1407 79 HOH HOH . M 10 HOH A 8 1408 62 HOH HOH . M 10 HOH A 9 1409 77 HOH HOH . M 10 HOH A 10 1410 30 HOH HOH . M 10 HOH A 11 1411 50 HOH HOH . M 10 HOH A 12 1412 14 HOH HOH . M 10 HOH A 13 1413 101 HOH HOH . M 10 HOH A 14 1414 3 HOH HOH . M 10 HOH A 15 1415 45 HOH HOH . M 10 HOH A 16 1416 108 HOH HOH . M 10 HOH A 17 1417 52 HOH HOH . M 10 HOH A 18 1418 32 HOH HOH . M 10 HOH A 19 1419 92 HOH HOH . M 10 HOH A 20 1420 35 HOH HOH . M 10 HOH A 21 1421 51 HOH HOH . M 10 HOH A 22 1422 17 HOH HOH . M 10 HOH A 23 1423 36 HOH HOH . M 10 HOH A 24 1424 25 HOH HOH . M 10 HOH A 25 1425 70 HOH HOH . M 10 HOH A 26 1426 96 HOH HOH . M 10 HOH A 27 1427 100 HOH HOH . M 10 HOH A 28 1428 83 HOH HOH . M 10 HOH A 29 1429 89 HOH HOH . M 10 HOH A 30 1430 97 HOH HOH . M 10 HOH A 31 1431 56 HOH HOH . M 10 HOH A 32 1432 103 HOH HOH . M 10 HOH A 33 1433 64 HOH HOH . M 10 HOH A 34 1434 38 HOH HOH . M 10 HOH A 35 1435 23 HOH HOH . M 10 HOH A 36 1436 71 HOH HOH . M 10 HOH A 37 1437 95 HOH HOH . M 10 HOH A 38 1438 21 HOH HOH . M 10 HOH A 39 1439 28 HOH HOH . M 10 HOH A 40 1440 37 HOH HOH . M 10 HOH A 41 1441 85 HOH HOH . M 10 HOH A 42 1442 12 HOH HOH . M 10 HOH A 43 1443 20 HOH HOH . M 10 HOH A 44 1444 99 HOH HOH . M 10 HOH A 45 1445 42 HOH HOH . M 10 HOH A 46 1446 34 HOH HOH . M 10 HOH A 47 1447 105 HOH HOH . M 10 HOH A 48 1448 109 HOH HOH . M 10 HOH A 49 1449 1 HOH HOH . M 10 HOH A 50 1450 7 HOH HOH . M 10 HOH A 51 1451 82 HOH HOH . M 10 HOH A 52 1452 65 HOH HOH . M 10 HOH A 53 1453 55 HOH HOH . M 10 HOH A 54 1454 31 HOH HOH . M 10 HOH A 55 1455 46 HOH HOH . M 10 HOH A 56 1456 33 HOH HOH . M 10 HOH A 57 1457 48 HOH HOH . M 10 HOH A 58 1458 90 HOH HOH . M 10 HOH A 59 1459 39 HOH HOH . M 10 HOH A 60 1460 41 HOH HOH . M 10 HOH A 61 1461 10 HOH HOH . M 10 HOH A 62 1462 44 HOH HOH . M 10 HOH A 63 1463 81 HOH HOH . M 10 HOH A 64 1464 2 HOH HOH . M 10 HOH A 65 1465 75 HOH HOH . M 10 HOH A 66 1466 54 HOH HOH . M 10 HOH A 67 1467 91 HOH HOH . M 10 HOH A 68 1468 24 HOH HOH . M 10 HOH A 69 1469 22 HOH HOH . M 10 HOH A 70 1470 58 HOH HOH . M 10 HOH A 71 1471 72 HOH HOH . M 10 HOH A 72 1472 98 HOH HOH . M 10 HOH A 73 1473 19 HOH HOH . M 10 HOH A 74 1474 26 HOH HOH . M 10 HOH A 75 1475 13 HOH HOH . M 10 HOH A 76 1476 86 HOH HOH . M 10 HOH A 77 1477 5 HOH HOH . M 10 HOH A 78 1478 11 HOH HOH . M 10 HOH A 79 1479 15 HOH HOH . M 10 HOH A 80 1480 68 HOH HOH . M 10 HOH A 81 1481 73 HOH HOH . M 10 HOH A 82 1482 59 HOH HOH . M 10 HOH A 83 1483 110 HOH HOH . M 10 HOH A 84 1484 80 HOH HOH . M 10 HOH A 85 1485 67 HOH HOH . M 10 HOH A 86 1486 6 HOH HOH . M 10 HOH A 87 1487 43 HOH HOH . M 10 HOH A 88 1488 16 HOH HOH . M 10 HOH A 89 1489 107 HOH HOH . M 10 HOH A 90 1490 84 HOH HOH . M 10 HOH A 91 1491 94 HOH HOH . M 10 HOH A 92 1492 27 HOH HOH . M 10 HOH A 93 1493 60 HOH HOH . M 10 HOH A 94 1494 40 HOH HOH . M 10 HOH A 95 1495 18 HOH HOH . M 10 HOH A 96 1496 106 HOH HOH . M 10 HOH A 97 1497 78 HOH HOH . M 10 HOH A 98 1498 102 HOH HOH . N 10 HOH B 1 601 29 HOH HOH . N 10 HOH B 2 602 53 HOH HOH . N 10 HOH B 3 603 74 HOH HOH . N 10 HOH B 4 604 63 HOH HOH . N 10 HOH B 5 605 69 HOH HOH . N 10 HOH B 6 606 9 HOH HOH . N 10 HOH B 7 607 76 HOH HOH . N 10 HOH B 8 608 93 HOH HOH . O 10 HOH C 1 701 88 HOH HOH . O 10 HOH C 2 702 47 HOH HOH . O 10 HOH C 3 703 57 HOH HOH . O 10 HOH C 4 704 104 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 92.885 _atom_site.Cartn_y 82.173 _atom_site.Cartn_z 60.322 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 28.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #