data_7N2P
#
_model_server_result.job_id            t-CNEw9gIoctcUIvLsz5Xw 
_model_server_result.datetime_utc      '2024-10-25 20:36:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n2p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":304}' 
#
_entry.id    7N2P 
#
_exptl.entry_id    7N2P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7N2P 
_cell.length_a            54.925 
_cell.length_b            93.992 
_cell.length_c            177.774 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N2P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 M N N 
? 6 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 D SG CYS 23 D CYS 24 1_555 D SG CYS 90 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 D SG CYS 133 D CYS 134 1_555 D SG CYS 183 D CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 D SG CYS 158 D CYS 159 1_555 E SG CYS 169 F CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 E SG CYS 21 F CYS 23 1_555 E SG CYS 89 F CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 E SG CYS 143 F CYS 145 1_555 E SG CYS 208 F CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 D ND2 ASN 22 D ASN 23 1_555 K C1 NAG . D NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 D ND2 ASN 63 D ASN 64 1_555 L C1 NAG . D NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 D ND2 ASN 188 D ASN 189 1_555 J C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale4 E ND2 ASN 75 F ASN 77 1_555 N C1 NAG . F NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7N2P 
_atom_sites.fract_transf_matrix[1][1]    0.018207 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010639 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005625 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 GOL A 1 301 301 GOL GOL . 
G 6 GOL A 1 302 302 GOL GOL . 
H 6 GOL A 1 303 303 GOL GOL . 
I 6 GOL A 1 304 304 GOL GOL . 
J 7 NAG D 1 301 301 NAG NAG . 
K 7 NAG D 1 302 302 NAG NAG . 
L 7 NAG D 1 303 303 NAG NAG . 
M 6 GOL D 1 304 305 GOL GOL . 
N 7 NAG F 1 301 301 NAG NAG . 
O 6 GOL F 1 302 306 GOL GOL . 
P 8 SO4 F 1 303 1 SO4 SO4 . 
Q 9 HOH A 1 401 27 HOH HOH . 
Q 9 HOH A 2 402 56 HOH HOH . 
Q 9 HOH A 3 403 9 HOH HOH . 
Q 9 HOH A 4 404 29 HOH HOH . 
Q 9 HOH A 5 405 55 HOH HOH . 
Q 9 HOH A 6 406 14 HOH HOH . 
Q 9 HOH A 7 407 49 HOH HOH . 
Q 9 HOH A 8 408 13 HOH HOH . 
Q 9 HOH A 9 409 30 HOH HOH . 
Q 9 HOH A 10 410 23 HOH HOH . 
Q 9 HOH A 11 411 10 HOH HOH . 
Q 9 HOH A 12 412 3 HOH HOH . 
Q 9 HOH A 13 413 8 HOH HOH . 
Q 9 HOH A 14 414 28 HOH HOH . 
Q 9 HOH A 15 415 17 HOH HOH . 
Q 9 HOH A 16 416 16 HOH HOH . 
Q 9 HOH A 17 417 36 HOH HOH . 
Q 9 HOH A 18 418 39 HOH HOH . 
Q 9 HOH A 19 419 48 HOH HOH . 
Q 9 HOH A 20 420 25 HOH HOH . 
Q 9 HOH A 21 421 37 HOH HOH . 
Q 9 HOH A 22 422 44 HOH HOH . 
Q 9 HOH A 23 423 15 HOH HOH . 
Q 9 HOH A 24 424 32 HOH HOH . 
Q 9 HOH A 25 425 2 HOH HOH . 
R 9 HOH B 1 101 53 HOH HOH . 
S 9 HOH C 1 101 11 HOH HOH . 
S 9 HOH C 2 102 1 HOH HOH . 
T 9 HOH D 1 401 19 HOH HOH . 
T 9 HOH D 2 402 31 HOH HOH . 
T 9 HOH D 3 403 38 HOH HOH . 
T 9 HOH D 4 404 59 HOH HOH . 
T 9 HOH D 5 405 50 HOH HOH . 
T 9 HOH D 6 406 20 HOH HOH . 
T 9 HOH D 7 407 42 HOH HOH . 
T 9 HOH D 8 408 5 HOH HOH . 
T 9 HOH D 9 409 6 HOH HOH . 
T 9 HOH D 10 410 41 HOH HOH . 
T 9 HOH D 11 411 12 HOH HOH . 
T 9 HOH D 12 412 4 HOH HOH . 
T 9 HOH D 13 413 57 HOH HOH . 
T 9 HOH D 14 414 45 HOH HOH . 
T 9 HOH D 15 415 33 HOH HOH . 
T 9 HOH D 16 416 24 HOH HOH . 
T 9 HOH D 17 417 7 HOH HOH . 
T 9 HOH D 18 418 51 HOH HOH . 
T 9 HOH D 19 419 22 HOH HOH . 
T 9 HOH D 20 420 43 HOH HOH . 
T 9 HOH D 21 421 54 HOH HOH . 
T 9 HOH D 22 422 46 HOH HOH . 
U 9 HOH F 1 401 34 HOH HOH . 
U 9 HOH F 2 402 35 HOH HOH . 
U 9 HOH F 3 403 18 HOH HOH . 
U 9 HOH F 4 404 26 HOH HOH . 
U 9 HOH F 5 405 58 HOH HOH . 
U 9 HOH F 6 406 52 HOH HOH . 
U 9 HOH F 7 407 40 HOH HOH . 
U 9 HOH F 8 408 60 HOH HOH . 
U 9 HOH F 9 409 47 HOH HOH . 
U 9 HOH F 10 410 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 6 -38.35 -15.229 53.929 1 66.18 ? C1 GOL 304 D 1 
HETATM 2 O O1 GOL . . . M 6 -37.422 -15.253 52.889 1 56.27 ? O1 GOL 304 D 1 
HETATM 3 C C2 GOL . . . M 6 -39.151 -13.908 53.801 1 59.97 ? C2 GOL 304 D 1 
HETATM 4 O O2 GOL . . . M 6 -40.13 -13.803 54.78 1 64.27 ? O2 GOL 304 D 1 
HETATM 5 C C3 GOL . . . M 6 -39.747 -13.933 52.37 1 60.86 ? C3 GOL 304 D 1 
HETATM 6 O O3 GOL . . . M 6 -40.422 -12.726 52.187 1 46.66 ? O3 GOL 304 D 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           6 
#