data_7N2Q
#
_model_server_result.job_id            L4MZrTptWobERT-kJBnWrQ 
_model_server_result.datetime_utc      '2024-10-18 17:25:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n2q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":301}' 
#
_entry.id    7N2Q 
#
_exptl.entry_id    7N2Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.325 
_cell.angle_gamma         90 
_cell.entry_id            7N2Q 
_cell.length_a            54.977 
_cell.length_b            97.412 
_cell.length_c            175.484 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N2Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,K,L,M,N,X,Y,Z,AA,BA 1 1 
F,G,H,I,J,O,P,Q,R,S,T,U,V,W,CA,DA,EA,FA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 O N N 
? 6 P N N 
? 6 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 D CYS 24 1_555 A SG CYS 90 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 133 D CYS 134 1_555 A SG CYS 183 D CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 158 D CYS 159 1_555 B SG CYS 168 F CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 20 F CYS 23 1_555 B SG CYS 88 F CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 B SG CYS 142 F CYS 145 1_555 B SG CYS 207 F CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 C SG CYS 101 A CYS 101 1_555 C SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 C SG CYS 203 A CYS 203 1_555 C SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 D SG CYS 26 B CYS 25 1_555 D SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 F SG CYS 23 E CYS 24 1_555 F SG CYS 90 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 F SG CYS 133 E CYS 134 1_555 F SG CYS 183 E CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 F SG CYS 158 E CYS 159 1_555 G SG CYS 168 G CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf12 G SG CYS 20 G CYS 23 1_555 G SG CYS 88 G CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf13 G SG CYS 142 G CYS 145 1_555 G SG CYS 207 G CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 H SG CYS 101 H CYS 101 1_555 H SG CYS 164 H CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf15 H SG CYS 203 H CYS 203 1_555 H SG CYS 259 H CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf16 I SG CYS 26 I CYS 25 1_555 I SG CYS 81 I CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 22 D ASN 23 1_555 L C1 NAG . D NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale2 A ND2 ASN 63 D ASN 64 1_555 K C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 B ND2 ASN 74 F ASN 77 1_555 M C1 NAG . F NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale4 F ND2 ASN 22 E ASN 23 1_555 O C1 NAG . E NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale5 F ND2 ASN 63 E ASN 64 1_555 P C1 NAG . E NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale6 G ND2 ASN 74 G ASN 77 1_555 S C1 NAG . G NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 250 n n 
C1 O1 NAG sing 251 n n 
C1 O5 NAG sing 252 n n 
C1 H1 NAG sing 253 n n 
C2 C3 NAG sing 254 n n 
C2 N2 NAG sing 255 n n 
C2 H2 NAG sing 256 n n 
C3 C4 NAG sing 257 n n 
C3 O3 NAG sing 258 n n 
C3 H3 NAG sing 259 n n 
C4 C5 NAG sing 260 n n 
C4 O4 NAG sing 261 n n 
C4 H4 NAG sing 262 n n 
C5 C6 NAG sing 263 n n 
C5 O5 NAG sing 264 n n 
C5 H5 NAG sing 265 n n 
C6 O6 NAG sing 266 n n 
C6 H61 NAG sing 267 n n 
C6 H62 NAG sing 268 n n 
C7 C8 NAG sing 269 n n 
C7 N2 NAG sing 270 n n 
C7 O7 NAG doub 271 n n 
C8 H81 NAG sing 272 n n 
C8 H82 NAG sing 273 n n 
C8 H83 NAG sing 274 n n 
N2 HN2 NAG sing 275 n n 
O1 HO1 NAG sing 276 n n 
O3 HO3 NAG sing 277 n n 
O4 HO4 NAG sing 278 n n 
O6 HO6 NAG sing 279 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7N2Q 
_atom_sites.fract_transf_matrix[1][1]    0.018189 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000739 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010266 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005703 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 NAG D 1 301 203 NAG NAG . 
L 6 NAG D 1 302 204 NAG NAG . 
M 6 NAG F 1 301 242 NAG NAG . 
N 7 SO4 F 1 302 1 SO4 SO4 . 
O 6 NAG E 1 301 203 NAG NAG . 
P 6 NAG E 1 302 204 NAG NAG . 
Q 8 GOL E 1 303 205 GOL GOL . 
R 7 SO4 E 1 304 4 SO4 SO4 . 
S 6 NAG G 1 301 244 NAG NAG . 
T 8 GOL G 1 302 245 GOL GOL . 
U 8 GOL G 1 303 246 GOL GOL . 
V 7 SO4 G 1 304 2 SO4 SO4 . 
W 7 SO4 H 1 301 3 SO4 SO4 . 
X 9 HOH D 1 401 47 HOH HOH . 
X 9 HOH D 2 402 46 HOH HOH . 
X 9 HOH D 3 403 35 HOH HOH . 
X 9 HOH D 4 404 28 HOH HOH . 
Y 9 HOH F 1 401 73 HOH HOH . 
Y 9 HOH F 2 402 13 HOH HOH . 
Y 9 HOH F 3 403 96 HOH HOH . 
Y 9 HOH F 4 404 61 HOH HOH . 
Y 9 HOH F 5 405 11 HOH HOH . 
Z 9 HOH A 1 301 71 HOH HOH . 
Z 9 HOH A 2 302 42 HOH HOH . 
Z 9 HOH A 3 303 27 HOH HOH . 
Z 9 HOH A 4 304 69 HOH HOH . 
Z 9 HOH A 5 305 14 HOH HOH . 
Z 9 HOH A 6 306 62 HOH HOH . 
Z 9 HOH A 7 307 43 HOH HOH . 
Z 9 HOH A 8 308 4 HOH HOH . 
Z 9 HOH A 9 309 45 HOH HOH . 
Z 9 HOH A 10 310 31 HOH HOH . 
Z 9 HOH A 11 311 58 HOH HOH . 
Z 9 HOH A 12 312 79 HOH HOH . 
Z 9 HOH A 13 313 34 HOH HOH . 
Z 9 HOH A 14 314 7 HOH HOH . 
AA 9 HOH B 1 101 50 HOH HOH . 
AA 9 HOH B 2 102 70 HOH HOH . 
AA 9 HOH B 3 103 23 HOH HOH . 
BA 9 HOH C 1 101 76 HOH HOH . 
BA 9 HOH C 2 102 51 HOH HOH . 
CA 9 HOH E 1 401 15 HOH HOH . 
CA 9 HOH E 2 402 3 HOH HOH . 
CA 9 HOH E 3 403 36 HOH HOH . 
CA 9 HOH E 4 404 72 HOH HOH . 
CA 9 HOH E 5 405 52 HOH HOH . 
CA 9 HOH E 6 406 1 HOH HOH . 
CA 9 HOH E 7 407 2 HOH HOH . 
CA 9 HOH E 8 408 16 HOH HOH . 
CA 9 HOH E 9 409 9 HOH HOH . 
CA 9 HOH E 10 410 20 HOH HOH . 
CA 9 HOH E 11 411 60 HOH HOH . 
DA 9 HOH G 1 401 65 HOH HOH . 
DA 9 HOH G 2 402 67 HOH HOH . 
DA 9 HOH G 3 403 48 HOH HOH . 
DA 9 HOH G 4 404 53 HOH HOH . 
DA 9 HOH G 5 405 33 HOH HOH . 
DA 9 HOH G 6 406 37 HOH HOH . 
DA 9 HOH G 7 407 59 HOH HOH . 
DA 9 HOH G 8 408 32 HOH HOH . 
EA 9 HOH H 1 401 54 HOH HOH . 
EA 9 HOH H 2 402 94 HOH HOH . 
EA 9 HOH H 3 403 49 HOH HOH . 
EA 9 HOH H 4 404 29 HOH HOH . 
EA 9 HOH H 5 405 40 HOH HOH . 
EA 9 HOH H 6 406 6 HOH HOH . 
EA 9 HOH H 7 407 57 HOH HOH . 
EA 9 HOH H 8 408 19 HOH HOH . 
EA 9 HOH H 9 409 55 HOH HOH . 
EA 9 HOH H 10 410 18 HOH HOH . 
EA 9 HOH H 11 411 22 HOH HOH . 
EA 9 HOH H 12 412 87 HOH HOH . 
EA 9 HOH H 13 413 5 HOH HOH . 
EA 9 HOH H 14 414 39 HOH HOH . 
EA 9 HOH H 15 415 44 HOH HOH . 
EA 9 HOH H 16 416 10 HOH HOH . 
EA 9 HOH H 17 417 21 HOH HOH . 
EA 9 HOH H 18 418 17 HOH HOH . 
EA 9 HOH H 19 419 41 HOH HOH . 
EA 9 HOH H 20 420 75 HOH HOH . 
FA 9 HOH I 1 101 56 HOH HOH . 
FA 9 HOH I 2 102 66 HOH HOH . 
FA 9 HOH I 3 103 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . S 6 14.392 -28.223 76.741 1 89.79 ? C1 NAG 301 G 1 
HETATM 2 C C2 NAG . . . S 6 15.691 -28.711 77.382 1 75.68 ? C2 NAG 301 G 1 
HETATM 3 C C3 NAG . . . S 6 16.587 -29.366 76.335 1 81.26 ? C3 NAG 301 G 1 
HETATM 4 C C4 NAG . . . S 6 15.828 -30.457 75.592 1 91.42 ? C4 NAG 301 G 1 
HETATM 5 C C5 NAG . . . S 6 14.527 -29.899 75.022 1 92.55 ? C5 NAG 301 G 1 
HETATM 6 C C6 NAG . . . S 6 13.665 -30.957 74.376 1 74.6 ? C6 NAG 301 G 1 
HETATM 7 C C7 NAG . . . S 6 16.248 -27.341 79.34 1 81.86 ? C7 NAG 301 G 1 
HETATM 8 C C8 NAG . . . S 6 17.037 -26.175 79.852 1 81.73 ? C8 NAG 301 G 1 
HETATM 9 N N2 NAG . . . S 6 16.387 -27.616 78.039 1 85.44 ? N2 NAG 301 G 1 
HETATM 10 O O3 NAG . . . S 6 17.731 -29.921 76.975 1 72.89 ? O3 NAG 301 G 1 
HETATM 11 O O4 NAG . . . S 6 16.624 -30.969 74.529 1 84.52 ? O4 NAG 301 G 1 
HETATM 12 O O5 NAG . . . S 6 13.745 -29.314 76.073 1 90.12 ? O5 NAG 301 G 1 
HETATM 13 O O6 NAG . . . S 6 13.929 -31.058 72.984 1 81.09 ? O6 NAG 301 G 1 
HETATM 14 O O7 NAG . . . S 6 15.519 -28.004 80.07 1 76.8 ? O7 NAG 301 G 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#