data_7N2R
#
_model_server_result.job_id            VofAm4MV-1rr7BqyZxg8OA 
_model_server_result.datetime_utc      '2025-10-01 11:43:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n2r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    7N2R 
#
_exptl.entry_id    7N2R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              133.103 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ASPARTIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7N2R 
_cell.length_a            54.68 
_cell.length_b            94.423 
_cell.length_c            178.522 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N2R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 D CYS 24 1_555 A SG CYS 90 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 133 D CYS 134 1_555 A SG CYS 183 D CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 158 D CYS 159 1_555 B SG CYS 169 F CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 B SG CYS 21 F CYS 22 1_555 B SG CYS 89 F CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 B SG CYS 143 F CYS 144 1_555 B SG CYS 208 F CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 C SG CYS 101 A CYS 101 1_555 C SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf7 C SG CYS 203 A CYS 203 1_555 C SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 D SG CYS 26 B CYS 25 1_555 D SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A ND2 ASN 22 D ASN 23 1_555 F C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale2 A ND2 ASN 63 D ASN 64 1_555 H C1 NAG . D NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale3 A ND2 ASN 143 D ASN 144 1_555 G C1 NAG . D NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale4 A ND2 ASN 188 D ASN 189 1_555 I C1 NAG . D NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale5 B ND2 ASN 75 F ASN 76 1_555 K C1 NAG . F NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C4 H7 N O4' 
_chem_comp.formula_weight    133.103 
_chem_comp.id                ASP 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              'ASPARTIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ASP sing 55 n n 
N H ASP sing 56 n n 
N H2 ASP sing 57 n n 
CA C ASP sing 58 n n 
CA CB ASP sing 59 n n 
CA HA ASP sing 60 n n 
C O ASP doub 61 n n 
C OXT ASP sing 62 n n 
CB CG ASP sing 63 n n 
CB HB2 ASP sing 64 n n 
CB HB3 ASP sing 65 n n 
CG OD1 ASP doub 66 n n 
CG OD2 ASP sing 67 n n 
OD2 HD2 ASP sing 68 n n 
OXT HXT ASP sing 69 n n 
#
_atom_sites.entry_id                     7N2R 
_atom_sites.fract_transf_matrix[1][1]    0.018288 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005602 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NAG D 1 301 202 NAG NAG ? 
G 6 NAG D 1 302 203 NAG NAG ? 
H 6 NAG D 1 303 204 NAG NAG ? 
I 6 NAG D 1 304 205 NAG NAG ? 
J 7 ASP F 1 301 243 ASP ASP ? 
K 6 NAG F 1 302 301 NAG NAG ? 
L 8 SO4 F 1 303 1 SO4 SO4 ? 
M 8 SO4 F 1 304 2 SO4 SO4 ? 
N 9 EDO A 1 301 301 EDO EDO ? 
O 8 SO4 A 1 302 3 SO4 SO4 ? 
P 10 HOH D 1 401 7 HOH HOH ? 
P 10 HOH D 2 402 37 HOH HOH ? 
P 10 HOH D 3 403 15 HOH HOH ? 
P 10 HOH D 4 404 70 HOH HOH ? 
P 10 HOH D 5 405 54 HOH HOH ? 
P 10 HOH D 6 406 66 HOH HOH ? 
P 10 HOH D 7 407 23 HOH HOH ? 
P 10 HOH D 8 408 49 HOH HOH ? 
P 10 HOH D 9 409 61 HOH HOH ? 
P 10 HOH D 10 410 2 HOH HOH ? 
P 10 HOH D 11 411 11 HOH HOH ? 
P 10 HOH D 12 412 68 HOH HOH ? 
P 10 HOH D 13 413 19 HOH HOH ? 
P 10 HOH D 14 414 36 HOH HOH ? 
P 10 HOH D 15 415 38 HOH HOH ? 
P 10 HOH D 16 416 9 HOH HOH ? 
P 10 HOH D 17 417 58 HOH HOH ? 
Q 10 HOH F 1 401 65 HOH HOH ? 
Q 10 HOH F 2 402 41 HOH HOH ? 
Q 10 HOH F 3 403 62 HOH HOH ? 
Q 10 HOH F 4 404 22 HOH HOH ? 
Q 10 HOH F 5 405 17 HOH HOH ? 
Q 10 HOH F 6 406 1 HOH HOH ? 
Q 10 HOH F 7 407 16 HOH HOH ? 
Q 10 HOH F 8 408 13 HOH HOH ? 
Q 10 HOH F 9 409 26 HOH HOH ? 
Q 10 HOH F 10 410 24 HOH HOH ? 
Q 10 HOH F 11 411 28 HOH HOH ? 
Q 10 HOH F 12 412 57 HOH HOH ? 
Q 10 HOH F 13 413 43 HOH HOH ? 
Q 10 HOH F 14 414 55 HOH HOH ? 
Q 10 HOH F 15 415 10 HOH HOH ? 
Q 10 HOH F 16 416 40 HOH HOH ? 
Q 10 HOH F 17 417 27 HOH HOH ? 
R 10 HOH A 1 401 30 HOH HOH ? 
R 10 HOH A 2 402 45 HOH HOH ? 
R 10 HOH A 3 403 60 HOH HOH ? 
R 10 HOH A 4 404 6 HOH HOH ? 
R 10 HOH A 5 405 25 HOH HOH ? 
R 10 HOH A 6 406 64 HOH HOH ? 
R 10 HOH A 7 407 31 HOH HOH ? 
R 10 HOH A 8 408 47 HOH HOH ? 
R 10 HOH A 9 409 20 HOH HOH ? 
R 10 HOH A 10 410 59 HOH HOH ? 
R 10 HOH A 11 411 14 HOH HOH ? 
R 10 HOH A 12 412 69 HOH HOH ? 
R 10 HOH A 13 413 8 HOH HOH ? 
R 10 HOH A 14 414 63 HOH HOH ? 
R 10 HOH A 15 415 12 HOH HOH ? 
R 10 HOH A 16 416 5 HOH HOH ? 
R 10 HOH A 17 417 21 HOH HOH ? 
R 10 HOH A 18 418 48 HOH HOH ? 
R 10 HOH A 19 419 35 HOH HOH ? 
R 10 HOH A 20 420 53 HOH HOH ? 
R 10 HOH A 21 421 29 HOH HOH ? 
R 10 HOH A 22 422 46 HOH HOH ? 
R 10 HOH A 23 423 42 HOH HOH ? 
R 10 HOH A 24 424 34 HOH HOH ? 
R 10 HOH A 25 425 33 HOH HOH ? 
R 10 HOH A 26 426 32 HOH HOH ? 
S 10 HOH B 1 101 3 HOH HOH ? 
S 10 HOH B 2 102 67 HOH HOH ? 
S 10 HOH B 3 103 51 HOH HOH ? 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ASP . . . J 7 6.753 -16.264 0.093 1 162.05 ? N ASP 301 F 1 
HETATM 2 C CA ASP . . . J 7 5.448 -16.798 -0.274 1 164.68 ? CA ASP 301 F 1 
HETATM 3 C C ASP . . . J 7 5.365 -18.293 0.016 1 166.84 ? C ASP 301 F 1 
HETATM 4 O O ASP . . . J 7 4.278 -18.863 0.084 1 168.33 ? O ASP 301 F 1 
HETATM 5 C CB ASP . . . J 7 5.156 -16.534 -1.752 1 168.45 ? CB ASP 301 F 1 
HETATM 6 C CG ASP . . . J 7 3.751 -16.011 -1.983 1 168.92 ? CG ASP 301 F 1 
HETATM 7 O OD1 ASP . . . J 7 3.542 -15.278 -2.973 1 170.62 ? OD1 ASP 301 F 1 
HETATM 8 O OD2 ASP . . . J 7 2.857 -16.328 -1.169 1 167.76 ? OD2 ASP 301 F 1 
HETATM 9 O OXT ASP . . . J 7 6.382 -18.966 0.188 1 167.31 ? OXT ASP 301 F 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           208 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
#