data_7N2X # _model_server_result.job_id '_MmePloliDSnWnqYjTAK-g' _model_server_result.datetime_utc '2024-11-28 19:30:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7N2X # _exptl.entry_id 7N2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N2X _cell.length_a 94.355 _cell.length_b 94.355 _cell.length_c 53.081 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 89 n n N1 C10 FMN doub 90 n n C2 O2 FMN doub 91 n n C2 N3 FMN sing 92 n n N3 C4 FMN sing 93 n n N3 HN3 FMN sing 94 n n C4 O4 FMN doub 95 n n C4 C4A FMN sing 96 n n C4A N5 FMN doub 97 n n C4A C10 FMN sing 98 n n N5 C5A FMN sing 99 n n C5A C6 FMN doub 100 n y C5A C9A FMN sing 101 n y C6 C7 FMN sing 102 n y C6 H6 FMN sing 103 n n C7 C7M FMN sing 104 n n C7 C8 FMN doub 105 n y C7M HM71 FMN sing 106 n n C7M HM72 FMN sing 107 n n C7M HM73 FMN sing 108 n n C8 C8M FMN sing 109 n n C8 C9 FMN sing 110 n y C8M HM81 FMN sing 111 n n C8M HM82 FMN sing 112 n n C8M HM83 FMN sing 113 n n C9 C9A FMN doub 114 n y C9 H9 FMN sing 115 n n C9A N10 FMN sing 116 n n N10 C10 FMN sing 117 n n N10 C1' FMN sing 118 n n C1' C2' FMN sing 119 n n C1' "H1'1" FMN sing 120 n n C1' "H1'2" FMN sing 121 n n C2' O2' FMN sing 122 n n C2' C3' FMN sing 123 n n C2' H2' FMN sing 124 n n O2' HO2' FMN sing 125 n n C3' O3' FMN sing 126 n n C3' C4' FMN sing 127 n n C3' H3' FMN sing 128 n n O3' HO3' FMN sing 129 n n C4' O4' FMN sing 130 n n C4' C5' FMN sing 131 n n C4' H4' FMN sing 132 n n O4' HO4' FMN sing 133 n n C5' O5' FMN sing 134 n n C5' "H5'1" FMN sing 135 n n C5' "H5'2" FMN sing 136 n n O5' P FMN sing 137 n n P O1P FMN doub 138 n n P O2P FMN sing 139 n n P O3P FMN sing 140 n n O2P HOP2 FMN sing 141 n n O3P HOP3 FMN sing 142 n n # _atom_sites.entry_id 7N2X _atom_sites.fract_transf_matrix[1][1] 0.010598 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 301 301 FMN FMN . C 3 EDO A 1 302 302 EDO EDO . D 4 DHA A 1 303 303 DHA DHA . E 5 P4G A 1 304 304 P4G P4G . F 3 EDO A 1 305 305 EDO EDO . G 3 EDO A 1 306 306 EDO EDO . H 6 HOH A 1 401 401 HOH HOH . H 6 HOH A 2 402 402 HOH HOH . H 6 HOH A 3 403 403 HOH HOH . H 6 HOH A 4 404 404 HOH HOH . H 6 HOH A 5 405 405 HOH HOH . H 6 HOH A 6 406 406 HOH HOH . H 6 HOH A 7 407 407 HOH HOH . H 6 HOH A 8 408 408 HOH HOH . H 6 HOH A 9 409 409 HOH HOH . H 6 HOH A 10 410 410 HOH HOH . H 6 HOH A 11 411 411 HOH HOH . H 6 HOH A 12 412 412 HOH HOH . H 6 HOH A 13 413 413 HOH HOH . H 6 HOH A 14 414 414 HOH HOH . H 6 HOH A 15 415 416 HOH HOH . H 6 HOH A 16 416 415 HOH HOH . H 6 HOH A 17 417 417 HOH HOH . H 6 HOH A 18 418 418 HOH HOH . H 6 HOH A 19 419 419 HOH HOH . H 6 HOH A 20 420 420 HOH HOH . H 6 HOH A 21 421 421 HOH HOH . H 6 HOH A 22 422 422 HOH HOH . H 6 HOH A 23 423 423 HOH HOH . H 6 HOH A 24 424 424 HOH HOH . H 6 HOH A 25 425 425 HOH HOH . H 6 HOH A 26 426 426 HOH HOH . H 6 HOH A 27 427 428 HOH HOH . H 6 HOH A 28 428 427 HOH HOH . H 6 HOH A 29 429 429 HOH HOH . H 6 HOH A 30 430 430 HOH HOH . H 6 HOH A 31 431 431 HOH HOH . H 6 HOH A 32 432 432 HOH HOH . H 6 HOH A 33 433 433 HOH HOH . H 6 HOH A 34 434 434 HOH HOH . H 6 HOH A 35 435 435 HOH HOH . H 6 HOH A 36 436 436 HOH HOH . H 6 HOH A 37 437 437 HOH HOH . H 6 HOH A 38 438 438 HOH HOH . H 6 HOH A 39 439 439 HOH HOH . H 6 HOH A 40 440 440 HOH HOH . H 6 HOH A 41 441 441 HOH HOH . H 6 HOH A 42 442 442 HOH HOH . H 6 HOH A 43 443 443 HOH HOH . H 6 HOH A 44 444 444 HOH HOH . H 6 HOH A 45 445 445 HOH HOH . H 6 HOH A 46 446 446 HOH HOH . H 6 HOH A 47 447 447 HOH HOH . H 6 HOH A 48 448 448 HOH HOH . H 6 HOH A 49 449 449 HOH HOH . H 6 HOH A 50 450 450 HOH HOH . H 6 HOH A 51 451 451 HOH HOH . H 6 HOH A 52 452 452 HOH HOH . H 6 HOH A 53 453 453 HOH HOH . H 6 HOH A 54 454 454 HOH HOH . H 6 HOH A 55 455 455 HOH HOH . H 6 HOH A 56 456 456 HOH HOH . H 6 HOH A 57 457 457 HOH HOH . H 6 HOH A 58 458 458 HOH HOH . H 6 HOH A 59 459 459 HOH HOH . H 6 HOH A 60 460 460 HOH HOH . H 6 HOH A 61 461 461 HOH HOH . H 6 HOH A 62 462 462 HOH HOH . H 6 HOH A 63 463 463 HOH HOH . H 6 HOH A 64 464 464 HOH HOH . H 6 HOH A 65 465 465 HOH HOH . H 6 HOH A 66 466 466 HOH HOH . H 6 HOH A 67 467 467 HOH HOH . H 6 HOH A 68 468 468 HOH HOH . H 6 HOH A 69 469 469 HOH HOH . H 6 HOH A 70 470 470 HOH HOH . H 6 HOH A 71 471 471 HOH HOH . H 6 HOH A 72 472 472 HOH HOH . H 6 HOH A 73 473 473 HOH HOH . H 6 HOH A 74 474 474 HOH HOH . H 6 HOH A 75 475 475 HOH HOH . H 6 HOH A 76 476 476 HOH HOH . H 6 HOH A 77 477 477 HOH HOH . H 6 HOH A 78 478 478 HOH HOH . H 6 HOH A 79 479 479 HOH HOH . H 6 HOH A 80 480 480 HOH HOH . H 6 HOH A 81 481 481 HOH HOH . H 6 HOH A 82 482 482 HOH HOH . H 6 HOH A 83 483 483 HOH HOH . H 6 HOH A 84 484 484 HOH HOH . H 6 HOH A 85 485 485 HOH HOH . H 6 HOH A 86 486 486 HOH HOH . H 6 HOH A 87 487 487 HOH HOH . H 6 HOH A 88 488 488 HOH HOH . H 6 HOH A 89 489 489 HOH HOH . H 6 HOH A 90 490 490 HOH HOH . H 6 HOH A 91 491 491 HOH HOH . H 6 HOH A 92 492 492 HOH HOH . H 6 HOH A 93 493 493 HOH HOH . H 6 HOH A 94 494 494 HOH HOH . H 6 HOH A 95 495 495 HOH HOH . H 6 HOH A 96 496 496 HOH HOH . H 6 HOH A 97 497 497 HOH HOH . H 6 HOH A 98 498 498 HOH HOH . H 6 HOH A 99 499 499 HOH HOH . H 6 HOH A 100 500 500 HOH HOH . H 6 HOH A 101 501 501 HOH HOH . H 6 HOH A 102 502 502 HOH HOH . H 6 HOH A 103 503 503 HOH HOH . H 6 HOH A 104 504 504 HOH HOH . H 6 HOH A 105 505 505 HOH HOH . H 6 HOH A 106 506 506 HOH HOH . H 6 HOH A 107 507 507 HOH HOH . H 6 HOH A 108 508 508 HOH HOH . H 6 HOH A 109 509 509 HOH HOH . H 6 HOH A 110 510 510 HOH HOH . H 6 HOH A 111 511 511 HOH HOH . H 6 HOH A 112 512 512 HOH HOH . H 6 HOH A 113 513 513 HOH HOH . H 6 HOH A 114 514 514 HOH HOH . H 6 HOH A 115 515 515 HOH HOH . H 6 HOH A 116 516 516 HOH HOH . H 6 HOH A 117 517 517 HOH HOH . H 6 HOH A 118 518 518 HOH HOH . H 6 HOH A 119 519 519 HOH HOH . H 6 HOH A 120 520 520 HOH HOH . H 6 HOH A 121 521 521 HOH HOH . H 6 HOH A 122 522 522 HOH HOH . H 6 HOH A 123 523 523 HOH HOH . H 6 HOH A 124 524 524 HOH HOH . H 6 HOH A 125 525 525 HOH HOH . H 6 HOH A 126 526 526 HOH HOH . H 6 HOH A 127 527 527 HOH HOH . H 6 HOH A 128 528 528 HOH HOH . H 6 HOH A 129 529 529 HOH HOH . H 6 HOH A 130 530 530 HOH HOH . H 6 HOH A 131 531 531 HOH HOH . H 6 HOH A 132 532 532 HOH HOH . H 6 HOH A 133 533 533 HOH HOH . H 6 HOH A 134 534 534 HOH HOH . H 6 HOH A 135 535 535 HOH HOH . H 6 HOH A 136 536 536 HOH HOH . H 6 HOH A 137 537 537 HOH HOH . H 6 HOH A 138 538 538 HOH HOH . H 6 HOH A 139 539 539 HOH HOH . H 6 HOH A 140 540 540 HOH HOH . H 6 HOH A 141 541 541 HOH HOH . H 6 HOH A 142 542 542 HOH HOH . H 6 HOH A 143 543 543 HOH HOH . H 6 HOH A 144 544 544 HOH HOH . H 6 HOH A 145 545 545 HOH HOH . H 6 HOH A 146 546 546 HOH HOH . H 6 HOH A 147 547 547 HOH HOH . H 6 HOH A 148 548 548 HOH HOH . H 6 HOH A 149 549 549 HOH HOH . H 6 HOH A 150 550 550 HOH HOH . H 6 HOH A 151 551 551 HOH HOH . H 6 HOH A 152 552 552 HOH HOH . H 6 HOH A 153 553 553 HOH HOH . H 6 HOH A 154 554 554 HOH HOH . H 6 HOH A 155 555 555 HOH HOH . H 6 HOH A 156 556 556 HOH HOH . H 6 HOH A 157 557 557 HOH HOH . H 6 HOH A 158 558 558 HOH HOH . H 6 HOH A 159 559 559 HOH HOH . H 6 HOH A 160 560 560 HOH HOH . H 6 HOH A 161 561 561 HOH HOH . H 6 HOH A 162 562 562 HOH HOH . H 6 HOH A 163 563 563 HOH HOH . H 6 HOH A 164 564 564 HOH HOH . H 6 HOH A 165 565 565 HOH HOH . H 6 HOH A 166 566 566 HOH HOH . H 6 HOH A 167 567 567 HOH HOH . H 6 HOH A 168 568 568 HOH HOH . H 6 HOH A 169 569 569 HOH HOH . H 6 HOH A 170 570 570 HOH HOH . H 6 HOH A 171 571 571 HOH HOH . H 6 HOH A 172 572 572 HOH HOH . H 6 HOH A 173 573 573 HOH HOH . H 6 HOH A 174 574 574 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 23.048 40.443 32.771 1 23.93 ? N1 FMN 301 A 1 HETATM 2 C C2 FMN . . . B 2 24.349 40.806 32.853 1 22.49 ? C2 FMN 301 A 1 HETATM 3 O O2 FMN . . . B 2 24.739 41.967 32.752 1 21.5 ? O2 FMN 301 A 1 HETATM 4 N N3 FMN . . . B 2 25.303 39.862 33.133 1 26.31 ? N3 FMN 301 A 1 HETATM 5 C C4 FMN . . . B 2 24.989 38.547 33.342 1 27.02 ? C4 FMN 301 A 1 HETATM 6 O O4 FMN . . . B 2 25.919 37.746 33.513 1 25.79 ? O4 FMN 301 A 1 HETATM 7 C C4A FMN . . . B 2 23.658 38.156 33.305 1 25.45 ? C4A FMN 301 A 1 HETATM 8 N N5 FMN . . . B 2 23.272 36.856 33.562 1 19 ? N5 FMN 301 A 1 HETATM 9 C C5A FMN . . . B 2 21.912 36.493 33.427 1 22.23 ? C5A FMN 301 A 1 HETATM 10 C C6 FMN . . . B 2 21.528 35.167 33.613 1 24.56 ? C6 FMN 301 A 1 HETATM 11 C C7 FMN . . . B 2 20.18 34.835 33.464 1 25.39 ? C7 FMN 301 A 1 HETATM 12 C C7M FMN . . . B 2 19.761 33.41 33.659 1 31.31 ? C7M FMN 301 A 1 HETATM 13 C C8 FMN . . . B 2 19.223 35.791 33.165 1 26.65 ? C8 FMN 301 A 1 HETATM 14 C C8M FMN . . . B 2 17.761 35.405 33.051 1 31.24 ? C8M FMN 301 A 1 HETATM 15 C C9 FMN . . . B 2 19.604 37.12 32.991 1 26.26 ? C9 FMN 301 A 1 HETATM 16 C C9A FMN . . . B 2 20.951 37.453 33.097 1 22.02 ? C9A FMN 301 A 1 HETATM 17 N N10 FMN . . . B 2 21.369 38.76 32.912 1 24.28 ? N10 FMN 301 A 1 HETATM 18 C C10 FMN . . . B 2 22.693 39.113 32.992 1 26.75 ? C10 FMN 301 A 1 HETATM 19 C C1' FMN . . . B 2 20.399 39.845 32.565 1 24.51 ? C1' FMN 301 A 1 HETATM 20 C C2' FMN . . . B 2 20.151 39.708 31.065 1 23.59 ? C2' FMN 301 A 1 HETATM 21 O O2' FMN . . . B 2 21.416 39.89 30.407 1 23.32 ? O2' FMN 301 A 1 HETATM 22 C C3' FMN . . . B 2 19.13 40.784 30.677 1 25.11 ? C3' FMN 301 A 1 HETATM 23 O O3' FMN . . . B 2 17.892 40.461 31.317 1 28.53 ? O3' FMN 301 A 1 HETATM 24 C C4' FMN . . . B 2 18.947 40.892 29.166 1 23.85 ? C4' FMN 301 A 1 HETATM 25 O O4' FMN . . . B 2 17.813 41.711 28.883 1 27.95 ? O4' FMN 301 A 1 HETATM 26 C C5' FMN . . . B 2 18.687 39.51 28.547 1 22.78 ? C5' FMN 301 A 1 HETATM 27 O O5' FMN . . . B 2 18.265 39.697 27.193 1 19.81 ? O5' FMN 301 A 1 HETATM 28 P P FMN . . . B 2 16.862 39.064 26.835 1 17.64 ? P FMN 301 A 1 HETATM 29 O O1P FMN . . . B 2 15.831 39.929 27.588 1 19.07 ? O1P FMN 301 A 1 HETATM 30 O O2P FMN . . . B 2 16.695 39.195 25.355 1 17.68 ? O2P FMN 301 A 1 HETATM 31 O O3P FMN . . . B 2 16.827 37.653 27.317 1 19.17 ? O3P FMN 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #