data_7N3K # _model_server_result.job_id KVBiCwe1Fk5SN_g31R9x7Q _model_server_result.datetime_utc '2024-10-15 18:23:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 7N3K # _exptl.entry_id 7N3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.449 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.99 _cell.angle_gamma 90 _cell.entry_id 7N3K _cell.length_a 84.009 _cell.length_b 88.25 _cell.length_c 85.951 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K 1 1 C,D,L,M,N 2 1 E,F,O,P,Q 3 1 G,H,R,S,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 O N N ? 2 P N N ? 2 R N N ? 2 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 93 A CYS 73 1_555 I C14 ODN . A ODN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale2 D SG CYS 93 D CYS 73 1_555 M C14 ODN . D ODN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale3 E SG CYS 93 E CYS 73 1_555 O C14 ODN . E ODN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 G SG CYS 93 G CYS 73 1_555 R C14 ODN . G ODN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? covale ? covale5 H SG CYS 93 H CYS 73 1_555 T C14 ODN . H ODN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? # _chem_comp.formula 'C20 H30 O6' _chem_comp.formula_weight 366.449 _chem_comp.id ODN _chem_comp.mon_nstd_flag . _chem_comp.name (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 ODN sing 235 n n C13 C12 ODN sing 236 n n C13 C17 ODN sing 237 n n O2 C11 ODN sing 238 n n C12 C11 ODN sing 239 n n C12 C15 ODN sing 240 n n C11 C10 ODN sing 241 n n C15 C16 ODN sing 242 n n C17 O3 ODN doub 243 n n C17 C10 ODN sing 244 n n O4 C18 ODN sing 245 n n C10 C18 ODN sing 246 n n C10 C9 ODN sing 247 n n C16 C9 ODN sing 248 n n C18 O1 ODN sing 249 n n C18 C19 ODN sing 250 n n O1 C8 ODN sing 251 n n C9 C7 ODN sing 252 n n O5 C19 ODN sing 253 n n C8 C7 ODN sing 254 n n C19 C6 ODN sing 255 n n C7 C6 ODN sing 256 n n C7 C ODN sing 257 n n C6 C3 ODN sing 258 n n O C ODN sing 259 n n C C1 ODN sing 260 n n C3 C4 ODN sing 261 n n C3 C5 ODN sing 262 n n C3 C2 ODN sing 263 n n C1 C2 ODN sing 264 n n O4 H1 ODN sing 265 n n C8 H2 ODN sing 266 n n C8 H3 ODN sing 267 n n C19 H4 ODN sing 268 n n O5 H5 ODN sing 269 n n C6 H6 ODN sing 270 n n C5 H7 ODN sing 271 n n C5 H8 ODN sing 272 n n C5 H9 ODN sing 273 n n C4 H10 ODN sing 274 n n C4 H11 ODN sing 275 n n C4 H12 ODN sing 276 n n C2 H13 ODN sing 277 n n C2 H14 ODN sing 278 n n C1 H15 ODN sing 279 n n C1 H16 ODN sing 280 n n C13 H17 ODN sing 281 n n C14 H18 ODN sing 282 n n C14 H19 ODN sing 283 n n C14 H20 ODN sing 284 n n C12 H21 ODN sing 285 n n C11 H22 ODN sing 286 n n O2 H23 ODN sing 287 n n C15 H24 ODN sing 288 n n C15 H25 ODN sing 289 n n C16 H26 ODN sing 290 n n C16 H27 ODN sing 291 n n C9 H28 ODN sing 292 n n C H29 ODN sing 293 n n O H30 ODN sing 294 n n # _atom_sites.entry_id 7N3K _atom_sites.fract_transf_matrix[1][1] 0.011903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 ODN A 1 201 1 ODN ODN . J 2 ODN B 1 201 2 ODN ODN . K 3 SO4 B 1 202 1 SO4 SO4 . L 2 ODN C 1 201 3 ODN ODN . M 2 ODN D 1 201 4 ODN ODN . N 3 SO4 D 1 202 4 SO4 SO4 . O 2 ODN E 1 201 5 ODN ODN . P 2 ODN F 1 201 6 ODN ODN . Q 3 SO4 F 1 202 3 SO4 SO4 . R 2 ODN G 1 201 7 ODN ODN . S 3 SO4 G 1 202 2 SO4 SO4 . T 2 ODN H 1 201 8 ODN ODN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 ODN . . . I 2 -31.478 6.326 -48.121 1 108.57 ? O3 ODN 201 A 1 HETATM 2 C C17 ODN . . . I 2 -31.404 6.815 -49.232 1 109.57 ? C17 ODN 201 A 1 HETATM 3 C C10 ODN . . . I 2 -32.606 7.145 -50.075 1 112.86 ? C10 ODN 201 A 1 HETATM 4 C C18 ODN . . . I 2 -33.739 6.155 -49.836 1 118.05 ? C18 ODN 201 A 1 HETATM 5 O O4 ODN . . . I 2 -33.115 4.9 -49.561 1 120.5 ? O4 ODN 201 A 1 HETATM 6 O O1 ODN . . . I 2 -34.481 6.23 -51.065 1 118.88 ? O1 ODN 201 A 1 HETATM 7 C C8 ODN . . . I 2 -35.112 7.528 -51.257 1 118.82 ? C8 ODN 201 A 1 HETATM 8 C C19 ODN . . . I 2 -34.79 6.422 -48.732 1 120.23 ? C19 ODN 201 A 1 HETATM 9 O O5 ODN . . . I 2 -34.435 6.086 -47.379 1 120.65 ? O5 ODN 201 A 1 HETATM 10 C C6 ODN . . . I 2 -35.317 7.867 -48.805 1 120.17 ? C6 ODN 201 A 1 HETATM 11 C C3 ODN . . . I 2 -36.86 7.94 -48.51 1 121.68 ? C3 ODN 201 A 1 HETATM 12 C C5 ODN . . . I 2 -37.03 7.901 -46.98 1 122.07 ? C5 ODN 201 A 1 HETATM 13 C C4 ODN . . . I 2 -37.769 6.824 -49.098 1 122.69 ? C4 ODN 201 A 1 HETATM 14 C C2 ODN . . . I 2 -37.443 9.284 -49.015 1 120.56 ? C2 ODN 201 A 1 HETATM 15 C C1 ODN . . . I 2 -36.381 10.368 -49.224 1 119.57 ? C1 ODN 201 A 1 HETATM 16 C C13 ODN . . . I 2 -30.101 7.035 -49.942 1 103.23 ? C13 ODN 201 A 1 HETATM 17 C C14 ODN . . . I 2 -29.096 7.725 -49.022 1 92.12 ? C14 ODN 201 A 1 HETATM 18 C C12 ODN . . . I 2 -30.601 7.689 -51.237 1 108.92 ? C12 ODN 201 A 1 HETATM 19 C C11 ODN . . . I 2 -31.882 6.912 -51.402 1 110.37 ? C11 ODN 201 A 1 HETATM 20 O O2 ODN . . . I 2 -31.607 5.527 -51.516 1 110.42 ? O2 ODN 201 A 1 HETATM 21 C C15 ODN . . . I 2 -30.934 9.184 -51.186 1 109.61 ? C15 ODN 201 A 1 HETATM 22 C C16 ODN . . . I 2 -32.375 9.567 -50.821 1 111.83 ? C16 ODN 201 A 1 HETATM 23 C C9 ODN . . . I 2 -33.175 8.573 -49.941 1 114.02 ? C9 ODN 201 A 1 HETATM 24 C C7 ODN . . . I 2 -34.754 8.527 -50.11 1 118.34 ? C7 ODN 201 A 1 HETATM 25 C C ODN . . . I 2 -35.428 9.934 -50.343 1 119.63 ? C ODN 201 A 1 HETATM 26 O O ODN . . . I 2 -36.188 10.049 -51.572 1 120.46 ? O ODN 201 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #