data_7N3K
#
_model_server_result.job_id            PsnCCr_69jBTSrWbPHsc4A 
_model_server_result.datetime_utc      '2024-11-21 11:23:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n3k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":201}' 
#
_entry.id    7N3K 
#
_exptl.entry_id    7N3K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              366.449 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.99 
_cell.angle_gamma         90 
_cell.entry_id            7N3K 
_cell.length_a            84.009 
_cell.length_b            88.25 
_cell.length_c            85.951 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N3K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K 1 1 
C,D,L,M,N 2 1 
E,F,O,P,Q 3 1 
G,H,R,S,T 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 L N N 
? 2 M N N 
? 2 O N N 
? 2 P N N 
? 2 R N N 
? 2 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 93 A CYS 73 1_555 I C14 ODN . A ODN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? 
covale ? covale2 D SG CYS 93 D CYS 73 1_555 M C14 ODN . D ODN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale3 E SG CYS 93 E CYS 73 1_555 O C14 ODN . E ODN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale4 G SG CYS 93 G CYS 73 1_555 R C14 ODN . G ODN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? 
covale ? covale5 H SG CYS 93 H CYS 73 1_555 T C14 ODN . H ODN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
#
_chem_comp.formula           'C20 H30 O6' 
_chem_comp.formula_weight    366.449 
_chem_comp.id                ODN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 C13 ODN sing 235 n n 
C13 C12 ODN sing 236 n n 
C13 C17 ODN sing 237 n n 
O2 C11 ODN sing 238 n n 
C12 C11 ODN sing 239 n n 
C12 C15 ODN sing 240 n n 
C11 C10 ODN sing 241 n n 
C15 C16 ODN sing 242 n n 
C17 O3 ODN doub 243 n n 
C17 C10 ODN sing 244 n n 
O4 C18 ODN sing 245 n n 
C10 C18 ODN sing 246 n n 
C10 C9 ODN sing 247 n n 
C16 C9 ODN sing 248 n n 
C18 O1 ODN sing 249 n n 
C18 C19 ODN sing 250 n n 
O1 C8 ODN sing 251 n n 
C9 C7 ODN sing 252 n n 
O5 C19 ODN sing 253 n n 
C8 C7 ODN sing 254 n n 
C19 C6 ODN sing 255 n n 
C7 C6 ODN sing 256 n n 
C7 C ODN sing 257 n n 
C6 C3 ODN sing 258 n n 
O C ODN sing 259 n n 
C C1 ODN sing 260 n n 
C3 C4 ODN sing 261 n n 
C3 C5 ODN sing 262 n n 
C3 C2 ODN sing 263 n n 
C1 C2 ODN sing 264 n n 
O4 H1 ODN sing 265 n n 
C8 H2 ODN sing 266 n n 
C8 H3 ODN sing 267 n n 
C19 H4 ODN sing 268 n n 
O5 H5 ODN sing 269 n n 
C6 H6 ODN sing 270 n n 
C5 H7 ODN sing 271 n n 
C5 H8 ODN sing 272 n n 
C5 H9 ODN sing 273 n n 
C4 H10 ODN sing 274 n n 
C4 H11 ODN sing 275 n n 
C4 H12 ODN sing 276 n n 
C2 H13 ODN sing 277 n n 
C2 H14 ODN sing 278 n n 
C1 H15 ODN sing 279 n n 
C1 H16 ODN sing 280 n n 
C13 H17 ODN sing 281 n n 
C14 H18 ODN sing 282 n n 
C14 H19 ODN sing 283 n n 
C14 H20 ODN sing 284 n n 
C12 H21 ODN sing 285 n n 
C11 H22 ODN sing 286 n n 
O2 H23 ODN sing 287 n n 
C15 H24 ODN sing 288 n n 
C15 H25 ODN sing 289 n n 
C16 H26 ODN sing 290 n n 
C16 H27 ODN sing 291 n n 
C9 H28 ODN sing 292 n n 
C H29 ODN sing 293 n n 
O H30 ODN sing 294 n n 
#
_atom_sites.entry_id                     7N3K 
_atom_sites.fract_transf_matrix[1][1]    0.011903 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000002 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011635 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ODN A 1 201 1 ODN ODN . 
J 2 ODN B 1 201 2 ODN ODN . 
K 3 SO4 B 1 202 1 SO4 SO4 . 
L 2 ODN C 1 201 3 ODN ODN . 
M 2 ODN D 1 201 4 ODN ODN . 
N 3 SO4 D 1 202 4 SO4 SO4 . 
O 2 ODN E 1 201 5 ODN ODN . 
P 2 ODN F 1 201 6 ODN ODN . 
Q 3 SO4 F 1 202 3 SO4 SO4 . 
R 2 ODN G 1 201 7 ODN ODN . 
S 3 SO4 G 1 202 2 SO4 SO4 . 
T 2 ODN H 1 201 8 ODN ODN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 ODN . . . R 2 -16.767 -15.289 -8.412 1 77.56 ? O3 ODN 201 G 1 
HETATM 2 C C17 ODN . . . R 2 -15.723 -14.909 -8.915 1 76.22 ? C17 ODN 201 G 1 
HETATM 3 C C10 ODN . . . R 2 -14.671 -15.839 -9.473 1 79.29 ? C10 ODN 201 G 1 
HETATM 4 C C18 ODN . . . R 2 -14.638 -17.252 -8.842 1 82.84 ? C18 ODN 201 G 1 
HETATM 5 O O4 ODN . . . R 2 -14.531 -17.189 -7.407 1 85.36 ? O4 ODN 201 G 1 
HETATM 6 O O1 ODN . . . R 2 -13.492 -17.919 -9.427 1 83.18 ? O1 ODN 201 G 1 
HETATM 7 C C8 ODN . . . R 2 -13.435 -17.956 -10.87 1 82.88 ? C8 ODN 201 G 1 
HETATM 8 C C19 ODN . . . R 2 -15.87 -18.121 -9.148 1 82.47 ? C19 ODN 201 G 1 
HETATM 9 O O5 ODN . . . R 2 -17.129 -17.632 -8.643 1 80.72 ? O5 ODN 201 G 1 
HETATM 10 C C6 ODN . . . R 2 -15.951 -18.278 -10.678 1 81.82 ? C6 ODN 201 G 1 
HETATM 11 C C3 ODN . . . R 2 -16.175 -19.768 -11.099 1 78.89 ? C3 ODN 201 G 1 
HETATM 12 C C5 ODN . . . R 2 -17.635 -20.074 -10.736 1 77.62 ? C5 ODN 201 G 1 
HETATM 13 C C4 ODN . . . R 2 -15.301 -20.885 -10.486 1 76.86 ? C4 ODN 201 G 1 
HETATM 14 C C2 ODN . . . R 2 -15.974 -19.932 -12.615 1 80.92 ? C2 ODN 201 G 1 
HETATM 15 C C1 ODN . . . R 2 -15.811 -18.676 -13.485 1 82.07 ? C1 ODN 201 G 1 
HETATM 16 C C13 ODN . . . R 2 -15.313 -13.47 -9.052 1 70.38 ? C13 ODN 201 G 1 
HETATM 17 C C14 ODN . . . R 2 -16.378 -12.596 -9.709 1 56.66 ? C14 ODN 201 G 1 
HETATM 18 C C12 ODN . . . R 2 -13.931 -13.615 -9.748 1 75.79 ? C12 ODN 201 G 1 
HETATM 19 C C11 ODN . . . R 2 -13.413 -14.967 -9.265 1 77.96 ? C11 ODN 201 G 1 
HETATM 20 O O2 ODN . . . R 2 -12.886 -14.944 -7.928 1 77.53 ? O2 ODN 201 G 1 
HETATM 21 C C15 ODN . . . R 2 -13.897 -13.618 -11.285 1 75.76 ? C15 ODN 201 G 1 
HETATM 22 C C16 ODN . . . R 2 -14.181 -14.98 -11.912 1 77.85 ? C16 ODN 201 G 1 
HETATM 23 C C9 ODN . . . R 2 -14.956 -15.974 -10.993 1 80.23 ? C9 ODN 201 G 1 
HETATM 24 C C7 ODN . . . R 2 -14.806 -17.47 -11.397 1 82.29 ? C7 ODN 201 G 1 
HETATM 25 C C ODN . . . R 2 -14.892 -17.556 -12.943 1 81.96 ? C ODN 201 G 1 
HETATM 26 O O ODN . . . R 2 -13.575 -17.627 -13.511 1 81.48 ? O ODN 201 G 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           26 
#