data_7N3U # _model_server_result.job_id TkjCNO9qoclstVPmNIeHGg _model_server_result.datetime_utc '2024-11-08 20:03:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7N3U # _exptl.entry_id 7N3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 526.633 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(7R)-7-ethyl-7-hydroxy-6,7-dihydro-5H-cyclopenta[b]pyridin-2-yl]-6-[4-(4-methylpiperazin-1-yl)anilino]-2-(prop-2-en-1-yl)-1,2-dihydro-3H-pyrazolo[3,4-d]pyrimidin-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N3U _cell.length_a 45.92 _cell.length_b 50.51 _cell.length_c 119.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H34 N8 O2' _chem_comp.formula_weight 526.633 _chem_comp.id 05J _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(7R)-7-ethyl-7-hydroxy-6,7-dihydro-5H-cyclopenta[b]pyridin-2-yl]-6-[4-(4-methylpiperazin-1-yl)anilino]-2-(prop-2-en-1-yl)-1,2-dihydro-3H-pyrazolo[3,4-d]pyrimidin-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 N1 05J sing 1 n n C34 C35 05J sing 2 n n C34 C31 05J sing 3 n n N1 C6 05J sing 4 n n N1 C2 05J sing 5 n n C6 C5 05J sing 6 n n C2 C3 05J sing 7 n n C35 C36 05J sing 8 n n C38 C37 05J sing 9 n n C31 C30 05J doub 10 n y C31 C32 05J sing 11 n y C37 C36 05J sing 12 n n C5 N4 05J sing 13 n n C36 C32 05J sing 14 n n C36 O39 05J sing 15 n n C3 N4 05J sing 16 n n C30 C29 05J sing 17 n y N4 C8 05J sing 18 n n C32 N33 05J doub 19 n y C29 C28 05J doub 20 n y C8 C9 05J doub 21 n y C8 C13 05J sing 22 n y C9 C10 05J sing 23 n y N33 C28 05J sing 24 n y C28 N21 05J sing 25 n n C13 C12 05J doub 26 n y C10 C11 05J doub 27 n y C26 C25 05J sing 28 n n C26 C27 05J doub 29 n n N21 N22 05J sing 30 n n N21 C17 05J sing 31 n n C25 N22 05J sing 32 n n C12 C11 05J sing 33 n y C11 N14 05J sing 34 n n N22 C23 05J sing 35 n n N16 C17 05J doub 36 n y N16 C15 05J sing 37 n y C17 C18 05J sing 38 n y N14 C15 05J sing 39 n n C15 N20 05J doub 40 n y C23 C18 05J sing 41 n n C23 O24 05J doub 42 n n C18 C19 05J doub 43 n y N20 C19 05J sing 44 n y C5 H2 05J sing 45 n n C5 H3 05J sing 46 n n C6 H4 05J sing 47 n n C6 H5 05J sing 48 n n C7 H6 05J sing 49 n n C7 H7 05J sing 50 n n C7 H8 05J sing 51 n n C10 H9 05J sing 52 n n C13 H10 05J sing 53 n n C26 H11 05J sing 54 n n C2 H12 05J sing 55 n n C2 H13 05J sing 56 n n C3 H14 05J sing 57 n n C3 H15 05J sing 58 n n C9 H16 05J sing 59 n n C12 H17 05J sing 60 n n N14 H18 05J sing 61 n n C19 H19 05J sing 62 n n C25 H20 05J sing 63 n n C25 H21 05J sing 64 n n C27 H22 05J sing 65 n n C27 H23 05J sing 66 n n C29 H24 05J sing 67 n n C30 H25 05J sing 68 n n C34 H26 05J sing 69 n n C35 H27 05J sing 70 n n C37 H28 05J sing 71 n n C37 H29 05J sing 72 n n C38 H30 05J sing 73 n n C38 H31 05J sing 74 n n C38 H32 05J sing 75 n n O39 H33 05J sing 76 n n C34 H1 05J sing 77 n n C35 H34 05J sing 78 n n # _atom_sites.entry_id 7N3U _atom_sites.fract_transf_matrix[1][1] 0.021777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008363 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 05J A 1 601 1 05J LIG . C 3 HOH A 1 701 22 HOH HOH . C 3 HOH A 2 702 10 HOH HOH . C 3 HOH A 3 703 15 HOH HOH . C 3 HOH A 4 704 6 HOH HOH . C 3 HOH A 5 705 14 HOH HOH . C 3 HOH A 6 706 24 HOH HOH . C 3 HOH A 7 707 9 HOH HOH . C 3 HOH A 8 708 11 HOH HOH . C 3 HOH A 9 709 21 HOH HOH . C 3 HOH A 10 710 5 HOH HOH . C 3 HOH A 11 711 26 HOH HOH . C 3 HOH A 12 712 1 HOH HOH . C 3 HOH A 13 713 25 HOH HOH . C 3 HOH A 14 714 27 HOH HOH . C 3 HOH A 15 715 17 HOH HOH . C 3 HOH A 16 716 8 HOH HOH . C 3 HOH A 17 717 20 HOH HOH . C 3 HOH A 18 718 12 HOH HOH . C 3 HOH A 19 719 3 HOH HOH . C 3 HOH A 20 720 4 HOH HOH . C 3 HOH A 21 721 2 HOH HOH . C 3 HOH A 22 722 16 HOH HOH . C 3 HOH A 23 723 29 HOH HOH . C 3 HOH A 24 724 13 HOH HOH . C 3 HOH A 25 725 23 HOH HOH . C 3 HOH A 26 726 7 HOH HOH . C 3 HOH A 27 727 28 HOH HOH . C 3 HOH A 28 728 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 05J . . . B 2 6.143 -13.218 -23.99 1 59.93 ? N1 05J 601 A 1 HETATM 2 C C5 05J . . . B 2 7.419 -11.727 -22.477 1 59.95 ? C5 05J 601 A 1 HETATM 3 C C6 05J . . . B 2 6.797 -11.892 -23.875 1 61.28 ? C6 05J 601 A 1 HETATM 4 C C7 05J . . . B 2 5.412 -13.367 -25.261 1 60.07 ? C7 05J 601 A 1 HETATM 5 C C8 05J . . . B 2 9.168 -12.639 -21.047 1 55.68 ? C8 05J 601 A 1 HETATM 6 C C10 05J . . . B 2 10.728 -11.309 -19.739 1 55.34 ? C10 05J 601 A 1 HETATM 7 C C13 05J . . . B 2 9.185 -13.59 -20.024 1 55.64 ? C13 05J 601 A 1 HETATM 8 C C15 05J . . . B 2 12.622 -11.405 -17.322 1 54.36 ? C15 05J 601 A 1 HETATM 9 C C17 05J . . . B 2 14.315 -10.117 -18.198 1 55.26 ? C17 05J 601 A 1 HETATM 10 C C26 05J . . . B 2 18.195 -9.228 -19.496 1 56.09 ? C26 05J 601 A 1 HETATM 11 C C28 05J . . . B 2 14.653 -9.048 -20.342 1 56.83 ? C28 05J 601 A 1 HETATM 12 C C2 05J . . . B 2 7.125 -14.292 -23.802 1 56.94 ? C2 05J 601 A 1 HETATM 13 C C3 05J . . . B 2 7.799 -14.144 -22.428 1 58.87 ? C3 05J 601 A 1 HETATM 14 N N4 05J . . . B 2 8.404 -12.803 -22.232 1 57.37 ? N4 05J 601 A 1 HETATM 15 C C9 05J . . . B 2 9.961 -11.5 -20.879 1 56.46 ? C9 05J 601 A 1 HETATM 16 C C11 05J . . . B 2 10.746 -12.27 -18.726 1 55.39 ? C11 05J 601 A 1 HETATM 17 C C12 05J . . . B 2 9.956 -13.405 -18.889 1 54.92 ? C12 05J 601 A 1 HETATM 18 N N14 05J . . . B 2 11.481 -12.161 -17.519 1 54.02 ? N14 05J 601 A 1 HETATM 19 N N16 05J . . . B 2 13.211 -10.824 -18.352 1 53.13 ? N16 05J 601 A 1 HETATM 20 C C18 05J . . . B 2 14.842 -9.928 -16.896 1 57.7 ? C18 05J 601 A 1 HETATM 21 C C19 05J . . . B 2 14.218 -10.582 -15.827 1 56.37 ? C19 05J 601 A 1 HETATM 22 N N20 05J . . . B 2 13.114 -11.288 -16.079 1 56.55 ? N20 05J 601 A 1 HETATM 23 N N21 05J . . . B 2 15.076 -9.392 -19.07 1 55.32 ? N21 05J 601 A 1 HETATM 24 N N22 05J . . . B 2 16.176 -8.876 -18.396 1 56.82 ? N22 05J 601 A 1 HETATM 25 C C23 05J . . . B 2 16.058 -9.122 -17.07 1 58.87 ? C23 05J 601 A 1 HETATM 26 O O24 05J . . . B 2 16.868 -8.811 -16.209 1 55.79 ? O24 05J 601 A 1 HETATM 27 C C25 05J . . . B 2 17.287 -8.148 -18.982 1 57.04 ? C25 05J 601 A 1 HETATM 28 C C27 05J . . . B 2 18.944 -9.932 -18.68 1 54.84 ? C27 05J 601 A 1 HETATM 29 C C29 05J . . . B 2 13.909 -9.897 -21.169 1 56.39 ? C29 05J 601 A 1 HETATM 30 C C30 05J . . . B 2 13.504 -9.416 -22.403 1 57.79 ? C30 05J 601 A 1 HETATM 31 C C31 05J . . . B 2 13.826 -8.11 -22.758 1 58.57 ? C31 05J 601 A 1 HETATM 32 C C32 05J . . . B 2 14.544 -7.332 -21.879 1 60.48 ? C32 05J 601 A 1 HETATM 33 N N33 05J . . . B 2 14.915 -7.817 -20.718 1 58.21 ? N33 05J 601 A 1 HETATM 34 C C34 05J . . . B 2 13.526 -7.328 -24.012 1 60.22 ? C34 05J 601 A 1 HETATM 35 C C35 05J . . . B 2 14.067 -5.895 -23.794 1 61.97 ? C35 05J 601 A 1 HETATM 36 C C36 05J . . . B 2 14.806 -5.955 -22.438 1 62.64 ? C36 05J 601 A 1 HETATM 37 C C37 05J . . . B 2 16.314 -5.764 -22.61 1 63.7 ? C37 05J 601 A 1 HETATM 38 C C38 05J . . . B 2 16.644 -4.293 -22.893 1 65.49 ? C38 05J 601 A 1 HETATM 39 O O39 05J . . . B 2 14.298 -4.984 -21.528 1 68.75 ? O39 05J 601 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #