data_7N4F # _model_server_result.job_id vtYTeE6968ImRRYynHfMtg _model_server_result.datetime_utc '2024-12-17 09:33:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7N4F # _exptl.entry_id 7N4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.51 _cell.angle_gamma 90 _cell.entry_id 7N4F _cell.length_a 34.47 _cell.length_b 84.65 _cell.length_c 39.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 C CYS 96 1_555 B SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A SG CYS 98 C CYS 98 1_555 C CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? covale ? covale2 A SG CYS 101 C CYS 101 1_555 C CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale3 B SG CYS 98 A CYS 98 1_555 D CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? covale ? covale4 B SG CYS 101 A CYS 101 1_555 D CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc1 A SD MET 7 C MET 7 1_555 C FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc2 A NE2 HIS 67 C HIS 67 1_555 E NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc3 A NE2 HIS 71 C HIS 71 1_555 E NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 A NE2 HIS 102 C HIS 102 1_555 C FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc5 B SD MET 7 A MET 7 1_555 D FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc6 B NE2 HIS 67 A HIS 67 1_555 E NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc7 B NE2 HIS 71 A HIS 71 1_555 E NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc8 B NE2 HIS 102 A HIS 102 1_555 D FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc9 E NI NI . A NI 202 1_555 G O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 7N4F _atom_sites.fract_transf_matrix[1][1] 0.029011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005382 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011813 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC C 1 201 150 HEC HEM . D 2 HEC A 1 201 150 HEC HEM . E 3 NI A 1 202 1 NI NI . F 4 HOH C 1 301 30 HOH HOH . F 4 HOH C 2 302 67 HOH HOH . F 4 HOH C 3 303 70 HOH HOH . F 4 HOH C 4 304 50 HOH HOH . F 4 HOH C 5 305 63 HOH HOH . F 4 HOH C 6 306 29 HOH HOH . F 4 HOH C 7 307 28 HOH HOH . F 4 HOH C 8 308 3 HOH HOH . F 4 HOH C 9 309 12 HOH HOH . F 4 HOH C 10 310 21 HOH HOH . F 4 HOH C 11 311 7 HOH HOH . F 4 HOH C 12 312 15 HOH HOH . F 4 HOH C 13 313 52 HOH HOH . F 4 HOH C 14 314 42 HOH HOH . F 4 HOH C 15 315 19 HOH HOH . F 4 HOH C 16 316 8 HOH HOH . F 4 HOH C 17 317 45 HOH HOH . F 4 HOH C 18 318 58 HOH HOH . F 4 HOH C 19 319 10 HOH HOH . F 4 HOH C 20 320 73 HOH HOH . F 4 HOH C 21 321 60 HOH HOH . F 4 HOH C 22 322 57 HOH HOH . F 4 HOH C 23 323 16 HOH HOH . F 4 HOH C 24 324 32 HOH HOH . F 4 HOH C 25 325 5 HOH HOH . F 4 HOH C 26 326 37 HOH HOH . F 4 HOH C 27 327 64 HOH HOH . F 4 HOH C 28 328 34 HOH HOH . F 4 HOH C 29 329 25 HOH HOH . F 4 HOH C 30 330 69 HOH HOH . F 4 HOH C 31 331 62 HOH HOH . F 4 HOH C 32 332 74 HOH HOH . F 4 HOH C 33 333 33 HOH HOH . F 4 HOH C 34 334 56 HOH HOH . F 4 HOH C 35 335 40 HOH HOH . F 4 HOH C 36 336 27 HOH HOH . F 4 HOH C 37 337 14 HOH HOH . F 4 HOH C 38 338 22 HOH HOH . F 4 HOH C 39 339 49 HOH HOH . G 4 HOH A 1 301 72 HOH HOH . G 4 HOH A 2 302 61 HOH HOH . G 4 HOH A 3 303 24 HOH HOH . G 4 HOH A 4 304 4 HOH HOH . G 4 HOH A 5 305 66 HOH HOH . G 4 HOH A 6 306 47 HOH HOH . G 4 HOH A 7 307 35 HOH HOH . G 4 HOH A 8 308 59 HOH HOH . G 4 HOH A 9 309 53 HOH HOH . G 4 HOH A 10 310 46 HOH HOH . G 4 HOH A 11 311 31 HOH HOH . G 4 HOH A 12 312 39 HOH HOH . G 4 HOH A 13 313 26 HOH HOH . G 4 HOH A 14 314 36 HOH HOH . G 4 HOH A 15 315 43 HOH HOH . G 4 HOH A 16 316 2 HOH HOH . G 4 HOH A 17 317 17 HOH HOH . G 4 HOH A 18 318 9 HOH HOH . G 4 HOH A 19 319 55 HOH HOH . G 4 HOH A 20 320 38 HOH HOH . G 4 HOH A 21 321 68 HOH HOH . G 4 HOH A 22 322 23 HOH HOH . G 4 HOH A 23 323 41 HOH HOH . G 4 HOH A 24 324 44 HOH HOH . G 4 HOH A 25 325 1 HOH HOH . G 4 HOH A 26 326 13 HOH HOH . G 4 HOH A 27 327 71 HOH HOH . G 4 HOH A 28 328 11 HOH HOH . G 4 HOH A 29 329 20 HOH HOH . G 4 HOH A 30 330 54 HOH HOH . G 4 HOH A 31 331 6 HOH HOH . G 4 HOH A 32 332 18 HOH HOH . G 4 HOH A 33 333 51 HOH HOH . G 4 HOH A 34 334 48 HOH HOH . G 4 HOH A 35 335 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 2 -3.867 4.476 23.761 1 20.58 ? FE HEC 201 C 1 HETATM 2 C CHA HEC . . . C 2 -4.342 4.11 27.134 1 24.15 ? CHA HEC 201 C 1 HETATM 3 C CHB HEC . . . C 2 -2.391 1.267 23.689 1 24.05 ? CHB HEC 201 C 1 HETATM 4 C CHC HEC . . . C 2 -3.259 4.829 20.491 1 19.42 ? CHC HEC 201 C 1 HETATM 5 C CHD HEC . . . C 2 -5.002 7.74 23.927 1 20.49 ? CHD HEC 201 C 1 HETATM 6 N NA HEC . . . C 2 -3.44 2.964 25.15 1 23.11 ? NA HEC 201 C 1 HETATM 7 C C1A HEC . . . C 2 -3.747 3.043 26.5 1 23.55 ? C1A HEC 201 C 1 HETATM 8 C C2A HEC . . . C 2 -3.318 1.797 27.114 1 24.87 ? C2A HEC 201 C 1 HETATM 9 C C3A HEC . . . C 2 -2.788 1.019 26.161 1 20.86 ? C3A HEC 201 C 1 HETATM 10 C C4A HEC . . . C 2 -2.85 1.739 24.901 1 22.3 ? C4A HEC 201 C 1 HETATM 11 C CMA HEC . . . C 2 -2.196 -0.39 26.299 1 24.73 ? CMA HEC 201 C 1 HETATM 12 C CAA HEC . . . C 2 -3.463 1.421 28.609 1 27.53 ? CAA HEC 201 C 1 HETATM 13 C CBA HEC . . . C 2 -4.923 1.048 28.82 1 29.94 ? CBA HEC 201 C 1 HETATM 14 C CGA HEC . . . C 2 -5.11 0.659 30.262 1 39.13 ? CGA HEC 201 C 1 HETATM 15 O O1A HEC . . . C 2 -5.863 1.363 30.978 1 32.05 ? O1A HEC 201 C 1 HETATM 16 O O2A HEC . . . C 2 -4.486 -0.346 30.68 1 41.85 ? O2A HEC 201 C 1 HETATM 17 N NB HEC . . . C 2 -3.008 3.255 22.401 1 19.44 ? NB HEC 201 C 1 HETATM 18 C C1B HEC . . . C 2 -2.43 2.013 22.529 1 20.49 ? C1B HEC 201 C 1 HETATM 19 C C2B HEC . . . C 2 -1.901 1.609 21.233 1 21.41 ? C2B HEC 201 C 1 HETATM 20 C C3B HEC . . . C 2 -2.121 2.595 20.356 1 18.98 ? C3B HEC 201 C 1 HETATM 21 C C4B HEC . . . C 2 -2.841 3.634 21.059 1 20.43 ? C4B HEC 201 C 1 HETATM 22 C CMB HEC . . . C 2 -1.16 0.273 20.99 1 22.69 ? CMB HEC 201 C 1 HETATM 23 C CAB HEC . . . C 2 -1.755 2.652 18.855 1 20.09 ? CAB HEC 201 C 1 HETATM 24 C CBB HEC . . . C 2 -1.987 1.559 18.066 1 22.57 ? CBB HEC 201 C 1 HETATM 25 N NC HEC . . . C 2 -4.098 6.028 22.487 1 18.24 ? NC HEC 201 C 1 HETATM 26 C C1C HEC . . . C 2 -3.777 5.924 21.146 1 22.08 ? C1C HEC 201 C 1 HETATM 27 C C2C HEC . . . C 2 -4.07 7.187 20.509 1 20.21 ? C2C HEC 201 C 1 HETATM 28 C C3C HEC . . . C 2 -4.546 8.031 21.452 1 19.28 ? C3C HEC 201 C 1 HETATM 29 C C4C HEC . . . C 2 -4.58 7.291 22.707 1 22.73 ? C4C HEC 201 C 1 HETATM 30 C CMC HEC . . . C 2 -3.817 7.42 18.988 1 18.8 ? CMC HEC 201 C 1 HETATM 31 C CAC HEC . . . C 2 -5.047 9.49 21.308 1 22.85 ? CAC HEC 201 C 1 HETATM 32 C CBC HEC . . . C 2 -5.348 10.033 20.116 1 22.35 ? CBC HEC 201 C 1 HETATM 33 N ND HEC . . . C 2 -4.492 5.7 25.249 1 24.79 ? ND HEC 201 C 1 HETATM 34 C C1D HEC . . . C 2 -5.004 6.972 25.074 1 22.06 ? C1D HEC 201 C 1 HETATM 35 C C2D HEC . . . C 2 -5.573 7.385 26.335 1 22.57 ? C2D HEC 201 C 1 HETATM 36 C C3D HEC . . . C 2 -5.401 6.405 27.234 1 23.13 ? C3D HEC 201 C 1 HETATM 37 C C4D HEC . . . C 2 -4.708 5.323 26.566 1 23.93 ? C4D HEC 201 C 1 HETATM 38 C CMD HEC . . . C 2 -6.243 8.757 26.522 1 26.89 ? CMD HEC 201 C 1 HETATM 39 C CAD HEC . . . C 2 -5.86 6.413 28.734 1 23.98 ? CAD HEC 201 C 1 HETATM 40 C CBD HEC . . . C 2 -7.253 5.774 28.81 1 26.69 ? CBD HEC 201 C 1 HETATM 41 C CGD HEC . . . C 2 -7.778 5.714 30.238 1 34.31 ? CGD HEC 201 C 1 HETATM 42 O O1D HEC . . . C 2 -9.021 5.718 30.434 1 34.11 ? O1D HEC 201 C 1 HETATM 43 O O2D HEC . . . C 2 -6.95 5.656 31.177 1 29.38 ? O2D HEC 201 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 523 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #