data_7N4F
#
_model_server_result.job_id            BmO95SiFxqceYoH7GaHXug 
_model_server_result.datetime_utc      '2024-12-17 09:39:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n4f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    7N4F 
#
_exptl.entry_id    7N4F 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.51 
_cell.angle_gamma         90 
_cell.entry_id            7N4F 
_cell.length_a            34.47 
_cell.length_b            84.65 
_cell.length_c            39.14 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N4F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 C CYS 96 1_555 B SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A SG CYS 98 C CYS 98 1_555 C CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? 
covale ? covale2 A SG CYS 101 C CYS 101 1_555 C CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale3 B SG CYS 98 A CYS 98 1_555 D CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
covale ? covale4 B SG CYS 101 A CYS 101 1_555 D CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
metalc ? metalc1 A SD MET 7 C MET 7 1_555 C FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc2 A NE2 HIS 67 C HIS 67 1_555 E NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc3 A NE2 HIS 71 C HIS 71 1_555 E NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc4 A NE2 HIS 102 C HIS 102 1_555 C FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc5 B SD MET 7 A MET 7 1_555 D FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc6 B NE2 HIS 67 A HIS 67 1_555 E NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc7 B NE2 HIS 71 A HIS 71 1_555 E NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc8 B NE2 HIS 102 A HIS 102 1_555 D FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc9 E NI NI . A NI 202 1_555 G O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7N4F 
_atom_sites.fract_transf_matrix[1][1]    0.029011 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005382 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011813 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025985 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEC C 1 201 150 HEC HEM . 
D 2 HEC A 1 201 150 HEC HEM . 
E 3 NI A 1 202 1 NI NI . 
F 4 HOH C 1 301 30 HOH HOH . 
F 4 HOH C 2 302 67 HOH HOH . 
F 4 HOH C 3 303 70 HOH HOH . 
F 4 HOH C 4 304 50 HOH HOH . 
F 4 HOH C 5 305 63 HOH HOH . 
F 4 HOH C 6 306 29 HOH HOH . 
F 4 HOH C 7 307 28 HOH HOH . 
F 4 HOH C 8 308 3 HOH HOH . 
F 4 HOH C 9 309 12 HOH HOH . 
F 4 HOH C 10 310 21 HOH HOH . 
F 4 HOH C 11 311 7 HOH HOH . 
F 4 HOH C 12 312 15 HOH HOH . 
F 4 HOH C 13 313 52 HOH HOH . 
F 4 HOH C 14 314 42 HOH HOH . 
F 4 HOH C 15 315 19 HOH HOH . 
F 4 HOH C 16 316 8 HOH HOH . 
F 4 HOH C 17 317 45 HOH HOH . 
F 4 HOH C 18 318 58 HOH HOH . 
F 4 HOH C 19 319 10 HOH HOH . 
F 4 HOH C 20 320 73 HOH HOH . 
F 4 HOH C 21 321 60 HOH HOH . 
F 4 HOH C 22 322 57 HOH HOH . 
F 4 HOH C 23 323 16 HOH HOH . 
F 4 HOH C 24 324 32 HOH HOH . 
F 4 HOH C 25 325 5 HOH HOH . 
F 4 HOH C 26 326 37 HOH HOH . 
F 4 HOH C 27 327 64 HOH HOH . 
F 4 HOH C 28 328 34 HOH HOH . 
F 4 HOH C 29 329 25 HOH HOH . 
F 4 HOH C 30 330 69 HOH HOH . 
F 4 HOH C 31 331 62 HOH HOH . 
F 4 HOH C 32 332 74 HOH HOH . 
F 4 HOH C 33 333 33 HOH HOH . 
F 4 HOH C 34 334 56 HOH HOH . 
F 4 HOH C 35 335 40 HOH HOH . 
F 4 HOH C 36 336 27 HOH HOH . 
F 4 HOH C 37 337 14 HOH HOH . 
F 4 HOH C 38 338 22 HOH HOH . 
F 4 HOH C 39 339 49 HOH HOH . 
G 4 HOH A 1 301 72 HOH HOH . 
G 4 HOH A 2 302 61 HOH HOH . 
G 4 HOH A 3 303 24 HOH HOH . 
G 4 HOH A 4 304 4 HOH HOH . 
G 4 HOH A 5 305 66 HOH HOH . 
G 4 HOH A 6 306 47 HOH HOH . 
G 4 HOH A 7 307 35 HOH HOH . 
G 4 HOH A 8 308 59 HOH HOH . 
G 4 HOH A 9 309 53 HOH HOH . 
G 4 HOH A 10 310 46 HOH HOH . 
G 4 HOH A 11 311 31 HOH HOH . 
G 4 HOH A 12 312 39 HOH HOH . 
G 4 HOH A 13 313 26 HOH HOH . 
G 4 HOH A 14 314 36 HOH HOH . 
G 4 HOH A 15 315 43 HOH HOH . 
G 4 HOH A 16 316 2 HOH HOH . 
G 4 HOH A 17 317 17 HOH HOH . 
G 4 HOH A 18 318 9 HOH HOH . 
G 4 HOH A 19 319 55 HOH HOH . 
G 4 HOH A 20 320 38 HOH HOH . 
G 4 HOH A 21 321 68 HOH HOH . 
G 4 HOH A 22 322 23 HOH HOH . 
G 4 HOH A 23 323 41 HOH HOH . 
G 4 HOH A 24 324 44 HOH HOH . 
G 4 HOH A 25 325 1 HOH HOH . 
G 4 HOH A 26 326 13 HOH HOH . 
G 4 HOH A 27 327 71 HOH HOH . 
G 4 HOH A 28 328 11 HOH HOH . 
G 4 HOH A 29 329 20 HOH HOH . 
G 4 HOH A 30 330 54 HOH HOH . 
G 4 HOH A 31 331 6 HOH HOH . 
G 4 HOH A 32 332 18 HOH HOH . 
G 4 HOH A 33 333 51 HOH HOH . 
G 4 HOH A 34 334 48 HOH HOH . 
G 4 HOH A 35 335 65 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               0.47 
_atom_site.Cartn_y               10.712 
_atom_site.Cartn_z               8.356 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.07 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#