data_7N4G
#
_model_server_result.job_id            XX61iFH1zPKzWD14xqaA2A 
_model_server_result.datetime_utc      '2024-12-15 06:31:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n4g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    7N4G 
#
_exptl.entry_id    7N4G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.68 
_cell.angle_gamma         90 
_cell.entry_id            7N4G 
_cell.length_a            35.21 
_cell.length_b            78.27 
_cell.length_c            39 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N4G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 C CYS 96 1_555 B SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
covale ? covale1 A SG CYS 98 C CYS 98 1_555 C CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale2 A SG CYS 101 C CYS 101 1_555 C CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? 
covale ? covale3 B SG CYS 98 A CYS 98 1_555 D CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale4 B SG CYS 101 A CYS 101 1_555 D CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
metalc ? metalc1 A SD MET 7 C MET 7 1_555 C FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
metalc ? metalc2 A NE2 HIS 67 C HIS 67 1_555 E CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc3 A NE2 HIS 71 C HIS 71 1_555 E CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc4 A NE2 HIS 102 C HIS 102 1_555 C FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc5 F O HOH . C HOH 311 1_555 E CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc6 B SD MET 7 A MET 7 1_555 D FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc7 B NE2 HIS 67 A HIS 67 1_555 E CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc8 B NE2 HIS 71 A HIS 71 1_555 E CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc9 B NE2 HIS 97 A HIS 97 1_555 E CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc10 B NE2 HIS 102 A HIS 102 1_555 D FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 129 n n 
FE NB HEC sing 130 n n 
FE NC HEC sing 131 n n 
FE ND HEC sing 132 n n 
CHA C1A HEC doub 133 n n 
CHA C4D HEC sing 134 n n 
CHA HHA HEC sing 135 n n 
CHB C4A HEC doub 136 n n 
CHB C1B HEC sing 137 n n 
CHB HHB HEC sing 138 n n 
CHC C4B HEC doub 139 n n 
CHC C1C HEC sing 140 n n 
CHC HHC HEC sing 141 n n 
CHD C4C HEC doub 142 n n 
CHD C1D HEC sing 143 n n 
CHD HHD HEC sing 144 n n 
NA C1A HEC sing 145 n y 
NA C4A HEC sing 146 n y 
C1A C2A HEC sing 147 n y 
C2A C3A HEC doub 148 n y 
C2A CAA HEC sing 149 n n 
C3A C4A HEC sing 150 n y 
C3A CMA HEC sing 151 n n 
CMA HMA1 HEC sing 152 n n 
CMA HMA2 HEC sing 153 n n 
CMA HMA3 HEC sing 154 n n 
CAA CBA HEC sing 155 n n 
CAA HAA1 HEC sing 156 n n 
CAA HAA2 HEC sing 157 n n 
CBA CGA HEC sing 158 n n 
CBA HBA1 HEC sing 159 n n 
CBA HBA2 HEC sing 160 n n 
CGA O1A HEC doub 161 n n 
CGA O2A HEC sing 162 n n 
O2A H2A HEC sing 163 n n 
NB C1B HEC sing 164 n y 
NB C4B HEC sing 165 n y 
C1B C2B HEC doub 166 n y 
C2B C3B HEC sing 167 n y 
C2B CMB HEC sing 168 n n 
C3B C4B HEC sing 169 n y 
C3B CAB HEC doub 170 e n 
CMB HMB1 HEC sing 171 n n 
CMB HMB2 HEC sing 172 n n 
CMB HMB3 HEC sing 173 n n 
CAB CBB HEC sing 174 n n 
CAB HAB HEC sing 175 n n 
CBB HBB1 HEC sing 176 n n 
CBB HBB2 HEC sing 177 n n 
CBB HBB3 HEC sing 178 n n 
NC C1C HEC sing 179 n y 
NC C4C HEC sing 180 n y 
C1C C2C HEC doub 181 n y 
C2C C3C HEC sing 182 n y 
C2C CMC HEC sing 183 n n 
C3C C4C HEC sing 184 n y 
C3C CAC HEC doub 185 e n 
CMC HMC1 HEC sing 186 n n 
CMC HMC2 HEC sing 187 n n 
CMC HMC3 HEC sing 188 n n 
CAC CBC HEC sing 189 n n 
CAC HAC HEC sing 190 n n 
CBC HBC1 HEC sing 191 n n 
CBC HBC2 HEC sing 192 n n 
CBC HBC3 HEC sing 193 n n 
ND C1D HEC sing 194 n y 
ND C4D HEC sing 195 n y 
C1D C2D HEC doub 196 n y 
C2D C3D HEC sing 197 n y 
C2D CMD HEC sing 198 n n 
C3D C4D HEC doub 199 n y 
C3D CAD HEC sing 200 n n 
CMD HMD1 HEC sing 201 n n 
CMD HMD2 HEC sing 202 n n 
CMD HMD3 HEC sing 203 n n 
CAD CBD HEC sing 204 n n 
CAD HAD1 HEC sing 205 n n 
CAD HAD2 HEC sing 206 n n 
CBD CGD HEC sing 207 n n 
CBD HBD1 HEC sing 208 n n 
CBD HBD2 HEC sing 209 n n 
CGD O1D HEC doub 210 n n 
CGD O2D HEC sing 211 n n 
O2D H2D HEC sing 212 n n 
#
_atom_sites.entry_id                     7N4G 
_atom_sites.fract_transf_matrix[1][1]    0.028401 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005356 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012776 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026093 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEC C 1 201 150 HEC HEM . 
D 2 HEC A 1 201 150 HEC HEM . 
E 3 CO A 1 202 1 CO CO . 
F 4 HOH C 1 301 15 HOH HOH . 
F 4 HOH C 2 302 9 HOH HOH . 
F 4 HOH C 3 303 10 HOH HOH . 
F 4 HOH C 4 304 8 HOH HOH . 
F 4 HOH C 5 305 14 HOH HOH . 
F 4 HOH C 6 306 5 HOH HOH . 
F 4 HOH C 7 307 3 HOH HOH . 
F 4 HOH C 8 308 2 HOH HOH . 
F 4 HOH C 9 309 13 HOH HOH . 
F 4 HOH C 10 310 4 HOH HOH . 
F 4 HOH C 11 311 1 HOH HOH . 
F 4 HOH C 12 312 7 HOH HOH . 
F 4 HOH C 13 313 12 HOH HOH . 
F 4 HOH C 14 314 11 HOH HOH . 
F 4 HOH C 15 315 17 HOH HOH . 
G 4 HOH A 1 301 6 HOH HOH . 
G 4 HOH A 2 302 19 HOH HOH . 
G 4 HOH A 3 303 16 HOH HOH . 
G 4 HOH A 4 304 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . D 2 21.337 12.213 6.025 1 57.73 ? FE HEC 201 A 1 
HETATM 2 C CHA HEC . . . D 2 24.575 11.801 6.198 1 49.92 ? CHA HEC 201 A 1 
HETATM 3 C CHB HEC . . . D 2 21.489 14.643 8.576 1 52.07 ? CHB HEC 201 A 1 
HETATM 4 C CHC HEC . . . D 2 18.032 12.669 5.83 1 40.1 ? CHC HEC 201 A 1 
HETATM 5 C CHD HEC . . . D 2 21.098 9.871 3.391 1 44.06 ? CHD HEC 201 A 1 
HETATM 6 N NA HEC . . . D 2 22.725 13.067 7.206 1 51.64 ? NA HEC 201 A 1 
HETATM 7 C C1A HEC . . . D 2 24.056 12.729 7.069 1 53.28 ? C1A HEC 201 A 1 
HETATM 8 C C2A HEC . . . D 2 24.822 13.526 8.004 1 55.21 ? C2A HEC 201 A 1 
HETATM 9 C C3A HEC . . . D 2 23.974 14.318 8.666 1 54.03 ? C3A HEC 201 A 1 
HETATM 10 C C4A HEC . . . D 2 22.641 14.042 8.174 1 48.59 ? C4A HEC 201 A 1 
HETATM 11 C CMA HEC . . . D 2 24.332 15.344 9.759 1 54.62 ? CMA HEC 201 A 1 
HETATM 12 C CAA HEC . . . D 2 26.356 13.474 8.18 1 60.98 ? CAA HEC 201 A 1 
HETATM 13 C CBA HEC . . . D 2 27.01 14.17 6.984 1 64.04 ? CBA HEC 201 A 1 
HETATM 14 C CGA HEC . . . D 2 28.358 13.558 6.688 1 66.78 ? CGA HEC 201 A 1 
HETATM 15 O O1A HEC . . . D 2 29.165 14.201 5.959 1 59 ? O1A HEC 201 A 1 
HETATM 16 O O2A HEC . . . D 2 28.621 12.429 7.188 1 66.95 ? O2A HEC 201 A 1 
HETATM 17 N NB HEC . . . D 2 20.077 13.442 6.985 1 47.31 ? NB HEC 201 A 1 
HETATM 18 C C1B HEC . . . D 2 20.278 14.312 8.04 1 44.7 ? C1B HEC 201 A 1 
HETATM 19 C C2B HEC . . . D 2 19.014 14.815 8.496 1 41.04 ? C2B HEC 201 A 1 
HETATM 20 C C3B HEC . . . D 2 18.058 14.254 7.757 1 38.32 ? C3B HEC 201 A 1 
HETATM 21 C C4B HEC . . . D 2 18.702 13.396 6.78 1 42.67 ? C4B HEC 201 A 1 
HETATM 22 C CMB HEC . . . D 2 18.834 15.802 9.679 1 45.09 ? CMB HEC 201 A 1 
HETATM 23 C CAB HEC . . . D 2 16.531 14.487 7.855 1 35.11 ? CAB HEC 201 A 1 
HETATM 24 C CBB HEC . . . D 2 15.995 15.687 8.114 1 34.94 ? CBB HEC 201 A 1 
HETATM 25 N NC HEC . . . D 2 19.846 11.386 4.799 1 43.7 ? NC HEC 201 A 1 
HETATM 26 C C1C HEC . . . D 2 18.53 11.745 4.95 1 40.3 ? C1C HEC 201 A 1 
HETATM 27 C C2C HEC . . . D 2 17.731 10.994 4.012 1 44.38 ? C2C HEC 201 A 1 
HETATM 28 C C3C HEC . . . D 2 18.56 10.184 3.316 1 40.91 ? C3C HEC 201 A 1 
HETATM 29 C C4C HEC . . . D 2 19.914 10.441 3.807 1 44.79 ? C4C HEC 201 A 1 
HETATM 30 C CMC HEC . . . D 2 16.194 11.158 3.935 1 32.98 ? CMC HEC 201 A 1 
HETATM 31 C CAC HEC . . . D 2 18.248 9.168 2.188 1 39.24 ? CAC HEC 201 A 1 
HETATM 32 C CBC HEC . . . D 2 17.096 9.136 1.498 1 37.15 ? CBC HEC 201 A 1 
HETATM 33 N ND HEC . . . D 2 22.553 11.071 4.972 1 49.22 ? ND HEC 201 A 1 
HETATM 34 C C1D HEC . . . D 2 22.328 10.164 3.958 1 51.93 ? C1D HEC 201 A 1 
HETATM 35 C C2D HEC . . . D 2 23.607 9.581 3.602 1 51.9 ? C2D HEC 201 A 1 
HETATM 36 C C3D HEC . . . D 2 24.554 10.116 4.374 1 51.78 ? C3D HEC 201 A 1 
HETATM 37 C C4D HEC . . . D 2 23.912 11.06 5.25 1 52.29 ? C4D HEC 201 A 1 
HETATM 38 C CMD HEC . . . D 2 23.806 8.518 2.505 1 52.65 ? CMD HEC 201 A 1 
HETATM 39 C CAD HEC . . . D 2 26.076 9.817 4.392 1 56.86 ? CAD HEC 201 A 1 
HETATM 40 C CBD HEC . . . D 2 26.792 10.556 3.265 1 60.46 ? CBD HEC 201 A 1 
HETATM 41 C CGD HEC . . . D 2 28.297 10.394 3.323 1 64.77 ? CGD HEC 201 A 1 
HETATM 42 O O1D HEC . . . D 2 28.912 10.477 4.428 1 63.17 ? O1D HEC 201 A 1 
HETATM 43 O O2D HEC . . . D 2 28.879 10.206 2.224 1 59.54 ? O2D HEC 201 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#