data_7N4O # _model_server_result.job_id AyiePV9yPPFBGO_EmHhWHg _model_server_result.datetime_utc '2025-07-20 18:44:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 7N4O # _exptl.entry_id 7N4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N4O _cell.length_a 53.43 _cell.length_b 64.64 _cell.length_c 71.81 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LEU 37 B LEU 37 1_555 B N CSO 38 B CSO 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C CSO 38 B CSO 38 1_555 B N GLY 39 B GLY 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 152 n n C1 C2 GOL sing 153 n n C1 H11 GOL sing 154 n n C1 H12 GOL sing 155 n n O1 HO1 GOL sing 156 n n C2 O2 GOL sing 157 n n C2 C3 GOL sing 158 n n C2 H2 GOL sing 159 n n O2 HO2 GOL sing 160 n n C3 O3 GOL sing 161 n n C3 H31 GOL sing 162 n n C3 H32 GOL sing 163 n n O3 HO3 GOL sing 164 n n # _atom_sites.entry_id 7N4O _atom_sites.fract_transf_matrix[1][1] 0.018716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 201 201 EDO EDO . D 4 GOL A 1 202 2 GOL GOL . E 4 GOL A 1 203 3 GOL GOL . F 4 GOL A 1 204 4 GOL GOL . G 4 GOL B 1 201 1 GOL GOL . H 5 HOH A 1 301 118 HOH HOH . H 5 HOH A 2 302 122 HOH HOH . H 5 HOH A 3 303 47 HOH HOH . H 5 HOH A 4 304 160 HOH HOH . H 5 HOH A 5 305 142 HOH HOH . H 5 HOH A 6 306 12 HOH HOH . H 5 HOH A 7 307 34 HOH HOH . H 5 HOH A 8 308 83 HOH HOH . H 5 HOH A 9 309 63 HOH HOH . H 5 HOH A 10 310 19 HOH HOH . H 5 HOH A 11 311 25 HOH HOH . H 5 HOH A 12 312 29 HOH HOH . H 5 HOH A 13 313 16 HOH HOH . H 5 HOH A 14 314 67 HOH HOH . H 5 HOH A 15 315 1 HOH HOH . H 5 HOH A 16 316 81 HOH HOH . H 5 HOH A 17 317 31 HOH HOH . H 5 HOH A 18 318 6 HOH HOH . H 5 HOH A 19 319 152 HOH HOH . H 5 HOH A 20 320 3 HOH HOH . H 5 HOH A 21 321 60 HOH HOH . H 5 HOH A 22 322 4 HOH HOH . H 5 HOH A 23 323 75 HOH HOH . H 5 HOH A 24 324 49 HOH HOH . H 5 HOH A 25 325 10 HOH HOH . H 5 HOH A 26 326 28 HOH HOH . H 5 HOH A 27 327 2 HOH HOH . H 5 HOH A 28 328 135 HOH HOH . H 5 HOH A 29 329 11 HOH HOH . H 5 HOH A 30 330 15 HOH HOH . H 5 HOH A 31 331 17 HOH HOH . H 5 HOH A 32 332 37 HOH HOH . H 5 HOH A 33 333 74 HOH HOH . H 5 HOH A 34 334 48 HOH HOH . H 5 HOH A 35 335 50 HOH HOH . H 5 HOH A 36 336 7 HOH HOH . H 5 HOH A 37 337 141 HOH HOH . H 5 HOH A 38 338 112 HOH HOH . H 5 HOH A 39 339 20 HOH HOH . H 5 HOH A 40 340 21 HOH HOH . H 5 HOH A 41 341 121 HOH HOH . H 5 HOH A 42 342 5 HOH HOH . H 5 HOH A 43 343 38 HOH HOH . H 5 HOH A 44 344 150 HOH HOH . H 5 HOH A 45 345 24 HOH HOH . H 5 HOH A 46 346 9 HOH HOH . H 5 HOH A 47 347 54 HOH HOH . H 5 HOH A 48 348 26 HOH HOH . H 5 HOH A 49 349 32 HOH HOH . H 5 HOH A 50 350 23 HOH HOH . H 5 HOH A 51 351 79 HOH HOH . H 5 HOH A 52 352 158 HOH HOH . H 5 HOH A 53 353 64 HOH HOH . H 5 HOH A 54 354 55 HOH HOH . H 5 HOH A 55 355 131 HOH HOH . H 5 HOH A 56 356 73 HOH HOH . H 5 HOH A 57 357 35 HOH HOH . H 5 HOH A 58 358 76 HOH HOH . H 5 HOH A 59 359 22 HOH HOH . H 5 HOH A 60 360 13 HOH HOH . H 5 HOH A 61 361 126 HOH HOH . H 5 HOH A 62 362 43 HOH HOH . H 5 HOH A 63 363 71 HOH HOH . H 5 HOH A 64 364 82 HOH HOH . H 5 HOH A 65 365 107 HOH HOH . H 5 HOH A 66 366 46 HOH HOH . H 5 HOH A 67 367 153 HOH HOH . H 5 HOH A 68 368 105 HOH HOH . H 5 HOH A 69 369 139 HOH HOH . H 5 HOH A 70 370 101 HOH HOH . H 5 HOH A 71 371 133 HOH HOH . H 5 HOH A 72 372 106 HOH HOH . H 5 HOH A 73 373 61 HOH HOH . H 5 HOH A 74 374 58 HOH HOH . H 5 HOH A 75 375 117 HOH HOH . H 5 HOH A 76 376 62 HOH HOH . H 5 HOH A 77 377 140 HOH HOH . H 5 HOH A 78 378 109 HOH HOH . H 5 HOH A 79 379 77 HOH HOH . H 5 HOH A 80 380 86 HOH HOH . H 5 HOH A 81 381 149 HOH HOH . H 5 HOH A 82 382 66 HOH HOH . H 5 HOH A 83 383 84 HOH HOH . H 5 HOH A 84 384 123 HOH HOH . I 5 HOH B 1 301 53 HOH HOH . I 5 HOH B 2 302 115 HOH HOH . I 5 HOH B 3 303 41 HOH HOH . I 5 HOH B 4 304 154 HOH HOH . I 5 HOH B 5 305 103 HOH HOH . I 5 HOH B 6 306 72 HOH HOH . I 5 HOH B 7 307 27 HOH HOH . I 5 HOH B 8 308 102 HOH HOH . I 5 HOH B 9 309 111 HOH HOH . I 5 HOH B 10 310 137 HOH HOH . I 5 HOH B 11 311 14 HOH HOH . I 5 HOH B 12 312 148 HOH HOH . I 5 HOH B 13 313 99 HOH HOH . I 5 HOH B 14 314 33 HOH HOH . I 5 HOH B 15 315 68 HOH HOH . I 5 HOH B 16 316 157 HOH HOH . I 5 HOH B 17 317 129 HOH HOH . I 5 HOH B 18 318 151 HOH HOH . I 5 HOH B 19 319 156 HOH HOH . I 5 HOH B 20 320 90 HOH HOH . I 5 HOH B 21 321 87 HOH HOH . I 5 HOH B 22 322 30 HOH HOH . I 5 HOH B 23 323 147 HOH HOH . I 5 HOH B 24 324 39 HOH HOH . I 5 HOH B 25 325 85 HOH HOH . I 5 HOH B 26 326 40 HOH HOH . I 5 HOH B 27 327 65 HOH HOH . I 5 HOH B 28 328 18 HOH HOH . I 5 HOH B 29 329 93 HOH HOH . I 5 HOH B 30 330 132 HOH HOH . I 5 HOH B 31 331 8 HOH HOH . I 5 HOH B 32 332 44 HOH HOH . I 5 HOH B 33 333 80 HOH HOH . I 5 HOH B 34 334 95 HOH HOH . I 5 HOH B 35 335 104 HOH HOH . I 5 HOH B 36 336 51 HOH HOH . I 5 HOH B 37 337 42 HOH HOH . I 5 HOH B 38 338 59 HOH HOH . I 5 HOH B 39 339 69 HOH HOH . I 5 HOH B 40 340 100 HOH HOH . I 5 HOH B 41 341 97 HOH HOH . I 5 HOH B 42 342 88 HOH HOH . I 5 HOH B 43 343 36 HOH HOH . I 5 HOH B 44 344 70 HOH HOH . I 5 HOH B 45 345 155 HOH HOH . I 5 HOH B 46 346 110 HOH HOH . I 5 HOH B 47 347 92 HOH HOH . I 5 HOH B 48 348 108 HOH HOH . I 5 HOH B 49 349 130 HOH HOH . I 5 HOH B 50 350 114 HOH HOH . I 5 HOH B 51 351 96 HOH HOH . I 5 HOH B 52 352 124 HOH HOH . I 5 HOH B 53 353 125 HOH HOH . I 5 HOH B 54 354 159 HOH HOH . I 5 HOH B 55 355 143 HOH HOH . I 5 HOH B 56 356 57 HOH HOH . I 5 HOH B 57 357 128 HOH HOH . I 5 HOH B 58 358 45 HOH HOH . I 5 HOH B 59 359 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 13.178 -19.297 1.382 1 66.77 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . F 4 14.186 -19.153 2.36 1 55.19 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . F 4 11.996 -20.096 1.988 1 64.76 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . F 4 11.996 -21.397 1.521 1 60.55 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . F 4 10.765 -19.309 1.538 1 51.27 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . F 4 9.657 -19.708 2.314 1 23.53 ? O3 GOL 204 A 1 HETATM 7 H H11 GOL . . . F 4 13.497 -19.763 0.593 1 80.13 ? H11 GOL 204 A 1 HETATM 8 H H12 GOL . . . F 4 12.847 -18.441 1.069 1 80.13 ? H12 GOL 204 A 1 HETATM 9 H HO1 GOL . . . F 4 14.872 -18.822 1.967 1 66.24 ? HO1 GOL 204 A 1 HETATM 10 H H2 GOL . . . F 4 12.043 -20.154 2.955 1 77.72 ? H2 GOL 204 A 1 HETATM 11 H HO2 GOL . . . F 4 11.306 -21.781 1.821 1 72.67 ? HO2 GOL 204 A 1 HETATM 12 H H31 GOL . . . F 4 10.637 -19.463 0.589 1 61.54 ? H31 GOL 204 A 1 HETATM 13 H H32 GOL . . . F 4 10.963 -18.363 1.62 1 61.54 ? H32 GOL 204 A 1 HETATM 14 H HO3 GOL . . . F 4 8.951 -19.497 1.896 1 28.24 ? HO3 GOL 204 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #