data_7N4U # _model_server_result.job_id 2ChKF9VOSQX5r5V_kxJg5w _model_server_result.datetime_utc '2024-10-21 05:12:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1401}' # _entry.id 7N4U # _exptl.entry_id 7N4U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N4U _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1409 NAG 2 n C NAG 2 C 2 NAG A 1410 NAG 2 n D NAG 1 D 1 NAG A 1411 NAG 2 n D NAG 2 D 2 NAG A 1412 NAG 2 n E NAG 1 E 1 NAG A 1413 NAG 2 n E NAG 2 E 2 NAG A 1414 NAG 2 n F NAG 1 F 1 NAG B 1409 NAG 2 n F NAG 2 F 2 NAG B 1410 NAG 2 n G NAG 1 G 1 NAG B 1411 NAG 2 n G NAG 2 G 2 NAG B 1412 NAG 2 n H NAG 1 H 1 NAG B 1413 NAG 2 n H NAG 2 H 2 NAG B 1414 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 471 A CYS 471 1_555 A SG CYS 485 A CYS 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 525 A CYS 525 1_555 A SG CYS 542 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 920 A CYS 920 1_555 A SG CYS 925 A CYS 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 966 A CYS 966 1_555 A SG CYS 1024 A CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 967 A CYS 967 1_555 A SG CYS 993 A CYS 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 980 A CYS 980 1_555 A SG CYS 989 A CYS 989 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 B SG CYS 471 B CYS 471 1_555 B SG CYS 485 B CYS 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 525 B CYS 525 1_555 B SG CYS 542 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 B SG CYS 920 B CYS 920 1_555 B SG CYS 925 B CYS 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 966 B CYS 966 1_555 B SG CYS 1024 B CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 967 B CYS 967 1_555 B SG CYS 993 B CYS 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 B SG CYS 980 B CYS 980 1_555 B SG CYS 989 B CYS 989 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 464 A ASN 464 1_555 J C1 NAG . A NAG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 497 A ASN 497 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 A ND2 ASN 506 A ASN 506 1_555 L C1 NAG . A NAG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 A ND2 ASN 909 A ASN 909 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.206 ? covale ? covale5 A ND2 ASN 1037 A ASN 1037 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 A ND2 ASN 1075 A ASN 1075 1_555 K C1 NAG . A NAG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 B ND2 ASN 464 B ASN 464 1_555 S C1 NAG . B NAG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 B ND2 ASN 497 B ASN 497 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale9 B ND2 ASN 506 B ASN 506 1_555 U C1 NAG . B NAG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale10 B ND2 ASN 909 B ASN 909 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.206 ? covale ? covale11 B ND2 ASN 1037 B ASN 1037 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 B ND2 ASN 1075 B ASN 1075 1_555 T C1 NAG . B NAG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale13 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale14 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale15 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale16 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale17 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7N4U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 NAG A 1 1401 1405 NAG NAG . J 3 NAG A 1 1402 1406 NAG NAG . K 3 NAG A 1 1403 1407 NAG NAG . L 3 NAG A 1 1404 1408 NAG NAG . M 4 CLR A 1 1405 1503 CLR CLR . N 4 CLR A 1 1406 1504 CLR CLR . O 5 VIV A 1 1407 1993 VIV VTE . P 6 POV A 1 1408 1601 POV POV . Q 6 POV B 1 1601 1601 POV POV . R 3 NAG B 1 1602 1405 NAG NAG . S 3 NAG B 1 1603 1406 NAG NAG . T 3 NAG B 1 1604 1407 NAG NAG . U 3 NAG B 1 1605 1408 NAG NAG . V 4 CLR B 1 1606 1503 CLR CLR . W 4 CLR B 1 1607 1504 CLR CLR . X 5 VIV B 1 1608 1993 VIV VTE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 3 207.8 127.338 111.179 1 189.78 ? C1 NAG 1401 A 1 HETATM 2 C C2 NAG . . . I 3 208.924 128.235 111.684 1 189.75 ? C2 NAG 1401 A 1 HETATM 3 C C3 NAG . . . I 3 210.004 127.419 112.385 1 190.34 ? C3 NAG 1401 A 1 HETATM 4 C C4 NAG . . . I 3 209.393 126.466 113.405 1 191 ? C4 NAG 1401 A 1 HETATM 5 C C5 NAG . . . I 3 208.246 125.673 112.792 1 190.89 ? C5 NAG 1401 A 1 HETATM 6 C C6 NAG . . . I 3 207.589 124.771 113.831 1 190.38 ? C6 NAG 1401 A 1 HETATM 7 C C7 NAG . . . I 3 208.867 130.003 110.023 1 188.14 ? C7 NAG 1401 A 1 HETATM 8 C C8 NAG . . . I 3 207.382 129.849 109.88 1 187.03 ? C8 NAG 1401 A 1 HETATM 9 N N2 NAG . . . I 3 209.502 128.975 110.579 1 189.05 ? N2 NAG 1401 A 1 HETATM 10 O O3 NAG . . . I 3 210.917 128.303 113.044 1 190.48 ? O3 NAG 1401 A 1 HETATM 11 O O4 NAG . . . I 3 210.4 125.562 113.876 1 190.93 ? O4 NAG 1401 A 1 HETATM 12 O O5 NAG . . . I 3 207.276 126.575 112.264 1 190.82 ? O5 NAG 1401 A 1 HETATM 13 O O6 NAG . . . I 3 206.666 125.537 114.613 1 189.91 ? O6 NAG 1401 A 1 HETATM 14 O O7 NAG . . . I 3 209.454 131.006 109.652 1 188.9 ? O7 NAG 1401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #