data_7N4U # _model_server_result.job_id YSNt2noGbKOcuOKPQpEBqg _model_server_result.datetime_utc '2024-10-21 04:54:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":1608}' # _entry.id 7N4U # _exptl.entry_id 7N4U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 430.706 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N4U _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 X N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1409 NAG 2 n C NAG 2 C 2 NAG A 1410 NAG 2 n D NAG 1 D 1 NAG A 1411 NAG 2 n D NAG 2 D 2 NAG A 1412 NAG 2 n E NAG 1 E 1 NAG A 1413 NAG 2 n E NAG 2 E 2 NAG A 1414 NAG 2 n F NAG 1 F 1 NAG B 1409 NAG 2 n F NAG 2 F 2 NAG B 1410 NAG 2 n G NAG 1 G 1 NAG B 1411 NAG 2 n G NAG 2 G 2 NAG B 1412 NAG 2 n H NAG 1 H 1 NAG B 1413 NAG 2 n H NAG 2 H 2 NAG B 1414 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 471 A CYS 471 1_555 A SG CYS 485 A CYS 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 525 A CYS 525 1_555 A SG CYS 542 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 920 A CYS 920 1_555 A SG CYS 925 A CYS 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 966 A CYS 966 1_555 A SG CYS 1024 A CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 967 A CYS 967 1_555 A SG CYS 993 A CYS 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 980 A CYS 980 1_555 A SG CYS 989 A CYS 989 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 B SG CYS 471 B CYS 471 1_555 B SG CYS 485 B CYS 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 525 B CYS 525 1_555 B SG CYS 542 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 B SG CYS 920 B CYS 920 1_555 B SG CYS 925 B CYS 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 966 B CYS 966 1_555 B SG CYS 1024 B CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 967 B CYS 967 1_555 B SG CYS 993 B CYS 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 B SG CYS 980 B CYS 980 1_555 B SG CYS 989 B CYS 989 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 464 A ASN 464 1_555 J C1 NAG . A NAG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 497 A ASN 497 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 A ND2 ASN 506 A ASN 506 1_555 L C1 NAG . A NAG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 A ND2 ASN 909 A ASN 909 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.206 ? covale ? covale5 A ND2 ASN 1037 A ASN 1037 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 A ND2 ASN 1075 A ASN 1075 1_555 K C1 NAG . A NAG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 B ND2 ASN 464 B ASN 464 1_555 S C1 NAG . B NAG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 B ND2 ASN 497 B ASN 497 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale9 B ND2 ASN 506 B ASN 506 1_555 U C1 NAG . B NAG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale10 B ND2 ASN 909 B ASN 909 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.206 ? covale ? covale11 B ND2 ASN 1037 B ASN 1037 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 B ND2 ASN 1075 B ASN 1075 1_555 T C1 NAG . B NAG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale13 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale14 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale15 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale16 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale17 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C29 H50 O2' _chem_comp.formula_weight 430.706 _chem_comp.id VIV _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7N4U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 NAG A 1 1401 1405 NAG NAG . J 3 NAG A 1 1402 1406 NAG NAG . K 3 NAG A 1 1403 1407 NAG NAG . L 3 NAG A 1 1404 1408 NAG NAG . M 4 CLR A 1 1405 1503 CLR CLR . N 4 CLR A 1 1406 1504 CLR CLR . O 5 VIV A 1 1407 1993 VIV VTE . P 6 POV A 1 1408 1601 POV POV . Q 6 POV B 1 1601 1601 POV POV . R 3 NAG B 1 1602 1405 NAG NAG . S 3 NAG B 1 1603 1406 NAG NAG . T 3 NAG B 1 1604 1407 NAG NAG . U 3 NAG B 1 1605 1408 NAG NAG . V 4 CLR B 1 1606 1503 CLR CLR . W 4 CLR B 1 1607 1504 CLR CLR . X 5 VIV B 1 1608 1993 VIV VTE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VIV . . . X 5 120.137 160.942 123.702 1 130.55 ? O1 VIV 1608 B 1 HETATM 2 O O2 VIV . . . X 5 118.394 159.347 118.513 1 132.25 ? O2 VIV 1608 B 1 HETATM 3 C C1 VIV . . . X 5 121.923 159.749 134.383 1 134.28 ? C1 VIV 1608 B 1 HETATM 4 C C2 VIV . . . X 5 120.082 159.153 120.35 1 131.94 ? C2 VIV 1608 B 1 HETATM 5 C C3 VIV . . . X 5 120.491 159.571 121.655 1 131.72 ? C3 VIV 1608 B 1 HETATM 6 C C4 VIV . . . X 5 119.737 160.505 122.364 1 131.13 ? C4 VIV 1608 B 1 HETATM 7 C C5 VIV . . . X 5 118.537 161.057 121.816 1 131.35 ? C5 VIV 1608 B 1 HETATM 8 C C6 VIV . . . X 5 118.12 160.648 120.533 1 131.93 ? C6 VIV 1608 B 1 HETATM 9 C C7 VIV . . . X 5 118.885 159.696 119.788 1 132.03 ? C7 VIV 1608 B 1 HETATM 10 C C8 VIV . . . X 5 120.96 158.125 119.618 1 131.74 ? C8 VIV 1608 B 1 HETATM 11 C C9 VIV . . . X 5 120.715 159.912 124.533 1 130.81 ? C9 VIV 1608 B 1 HETATM 12 C C10 VIV . . . X 5 121.772 159.036 122.328 1 131.58 ? C10 VIV 1608 B 1 HETATM 13 C C11 VIV . . . X 5 121.864 159.197 123.82 1 131.21 ? C11 VIV 1608 B 1 HETATM 14 C C12 VIV . . . X 5 117.702 162.078 122.601 1 131.31 ? C12 VIV 1608 B 1 HETATM 15 C C13 VIV . . . X 5 116.831 161.238 119.94 1 131.9 ? C13 VIV 1608 B 1 HETATM 16 C C14 VIV . . . X 5 119.596 158.924 124.907 1 130.83 ? C14 VIV 1608 B 1 HETATM 17 C C15 VIV . . . X 5 121.215 160.611 125.821 1 130.39 ? C15 VIV 1608 B 1 HETATM 18 C C16 VIV . . . X 5 122.248 159.877 126.713 1 130.31 ? C16 VIV 1608 B 1 HETATM 19 C C17 VIV . . . X 5 121.698 158.947 127.799 1 130.5 ? C17 VIV 1608 B 1 HETATM 20 C C18 VIV . . . X 5 122.569 158.969 129.069 1 131.48 ? C18 VIV 1608 B 1 HETATM 21 C C19 VIV . . . X 5 124.027 158.601 128.725 1 131.48 ? C19 VIV 1608 B 1 HETATM 22 C C20 VIV . . . X 5 121.992 158.039 130.146 1 132.12 ? C20 VIV 1608 B 1 HETATM 23 C C21 VIV . . . X 5 121.848 158.668 131.535 1 132.88 ? C21 VIV 1608 B 1 HETATM 24 C C22 VIV . . . X 5 122.976 158.384 132.53 1 133.68 ? C22 VIV 1608 B 1 HETATM 25 C C23 VIV . . . X 5 122.473 158.369 133.982 1 134.38 ? C23 VIV 1608 B 1 HETATM 26 C C24 VIV . . . X 5 123.574 157.859 134.935 1 134.7 ? C24 VIV 1608 B 1 HETATM 27 C C25 VIV . . . X 5 124.647 158.867 135.36 1 134.74 ? C25 VIV 1608 B 1 HETATM 28 C C26 VIV . . . X 5 124.557 159.306 136.829 1 135.36 ? C26 VIV 1608 B 1 HETATM 29 C C27 VIV . . . X 5 125.82 159.005 137.633 1 136.35 ? C27 VIV 1608 B 1 HETATM 30 C C28 VIV . . . X 5 126.876 160.083 137.404 1 136.71 ? C28 VIV 1608 B 1 HETATM 31 C C29 VIV . . . X 5 125.522 158.842 139.122 1 136.19 ? C29 VIV 1608 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #