data_7N4W # _model_server_result.job_id 9p9zaxuVTHCFMEJR6nDCvw _model_server_result.datetime_utc '2025-07-08 22:43:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7N4W # _exptl.entry_id 7N4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.428 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description rotundine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.12 _cell.angle_gamma 90 _cell.entry_id 7N4W _cell.length_a 87.88 _cell.length_b 50.61 _cell.length_c 46.079 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -0.096508 0 46.078899 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H25 N O4' _chem_comp.formula_weight 355.428 _chem_comp.id P4V _chem_comp.mon_nstd_flag . _chem_comp.name rotundine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C49 O46 P4V sing 250 n n O46 C43 P4V sing 251 n n O47 C48 P4V sing 252 n n O47 C44 P4V sing 253 n n C43 C42 P4V doub 254 n y C43 C44 P4V sing 255 n y C42 C41 P4V sing 256 n y C44 C45 P4V doub 257 n y C45 C40 P4V sing 258 n y C41 C40 P4V doub 259 n y C41 C4 P4V sing 260 n n C3 C4 P4V sing 261 n n C3 C35 P4V sing 262 n n C40 C5 P4V sing 263 n n C4 N7 P4V sing 264 n n C35 C34 P4V doub 265 n y C35 C30 P4V sing 266 n y C34 C33 P4V sing 267 n y N7 C1 P4V sing 268 n n N7 C6 P4V sing 269 n n C5 C6 P4V sing 270 n n C33 C32 P4V doub 271 n y C1 C30 P4V sing 272 n n C30 C31 P4V doub 273 n y C31 C32 P4V sing 274 n y C31 O37 P4V sing 275 n n C32 O36 P4V sing 276 n n C39 O36 P4V sing 277 n n O37 C38 P4V sing 278 n n C34 H1 P4V sing 279 n n C49 H2 P4V sing 280 n n C49 H3 P4V sing 281 n n C49 H4 P4V sing 282 n n C42 H5 P4V sing 283 n n C48 H6 P4V sing 284 n n C48 H7 P4V sing 285 n n C48 H8 P4V sing 286 n n C45 H9 P4V sing 287 n n C5 H10 P4V sing 288 n n C5 H11 P4V sing 289 n n C6 H12 P4V sing 290 n n C6 H13 P4V sing 291 n n C1 H15 P4V sing 292 n n C1 H16 P4V sing 293 n n C4 H17 P4V sing 294 n n C3 H18 P4V sing 295 n n C3 H19 P4V sing 296 n n C33 H20 P4V sing 297 n n C39 H21 P4V sing 298 n n C39 H22 P4V sing 299 n n C39 H23 P4V sing 300 n n C38 H24 P4V sing 301 n n C38 H25 P4V sing 302 n n C38 H26 P4V sing 303 n n # _atom_sites.entry_id 7N4W _atom_sites.fract_transf_matrix[1][1] 0.011379 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000025 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 201 SO4 SO4 . C 3 GOL A 1 202 301 GOL GOL . D 4 P4V A 1 203 401 P4V ROT . E 5 HOH A 1 301 102 HOH HOH . E 5 HOH A 2 302 77 HOH HOH . E 5 HOH A 3 303 18 HOH HOH . E 5 HOH A 4 304 49 HOH HOH . E 5 HOH A 5 305 58 HOH HOH . E 5 HOH A 6 306 85 HOH HOH . E 5 HOH A 7 307 36 HOH HOH . E 5 HOH A 8 308 88 HOH HOH . E 5 HOH A 9 309 28 HOH HOH . E 5 HOH A 10 310 17 HOH HOH . E 5 HOH A 11 311 64 HOH HOH . E 5 HOH A 12 312 81 HOH HOH . E 5 HOH A 13 313 101 HOH HOH . E 5 HOH A 14 314 55 HOH HOH . E 5 HOH A 15 315 89 HOH HOH . E 5 HOH A 16 316 103 HOH HOH . E 5 HOH A 17 317 26 HOH HOH . E 5 HOH A 18 318 7 HOH HOH . E 5 HOH A 19 319 80 HOH HOH . E 5 HOH A 20 320 10 HOH HOH . E 5 HOH A 21 321 63 HOH HOH . E 5 HOH A 22 322 65 HOH HOH . E 5 HOH A 23 323 19 HOH HOH . E 5 HOH A 24 324 48 HOH HOH . E 5 HOH A 25 325 3 HOH HOH . E 5 HOH A 26 326 13 HOH HOH . E 5 HOH A 27 327 32 HOH HOH . E 5 HOH A 28 328 21 HOH HOH . E 5 HOH A 29 329 8 HOH HOH . E 5 HOH A 30 330 1 HOH HOH . E 5 HOH A 31 331 46 HOH HOH . E 5 HOH A 32 332 43 HOH HOH . E 5 HOH A 33 333 40 HOH HOH . E 5 HOH A 34 334 59 HOH HOH . E 5 HOH A 35 335 39 HOH HOH . E 5 HOH A 36 336 73 HOH HOH . E 5 HOH A 37 337 31 HOH HOH . E 5 HOH A 38 338 27 HOH HOH . E 5 HOH A 39 339 5 HOH HOH . E 5 HOH A 40 340 67 HOH HOH . E 5 HOH A 41 341 9 HOH HOH . E 5 HOH A 42 342 52 HOH HOH . E 5 HOH A 43 343 94 HOH HOH . E 5 HOH A 44 344 92 HOH HOH . E 5 HOH A 45 345 29 HOH HOH . E 5 HOH A 46 346 100 HOH HOH . E 5 HOH A 47 347 22 HOH HOH . E 5 HOH A 48 348 4 HOH HOH . E 5 HOH A 49 349 33 HOH HOH . E 5 HOH A 50 350 37 HOH HOH . E 5 HOH A 51 351 68 HOH HOH . E 5 HOH A 52 352 78 HOH HOH . E 5 HOH A 53 353 11 HOH HOH . E 5 HOH A 54 354 60 HOH HOH . E 5 HOH A 55 355 53 HOH HOH . E 5 HOH A 56 356 16 HOH HOH . E 5 HOH A 57 357 62 HOH HOH . E 5 HOH A 58 358 15 HOH HOH . E 5 HOH A 59 359 91 HOH HOH . E 5 HOH A 60 360 38 HOH HOH . E 5 HOH A 61 361 76 HOH HOH . E 5 HOH A 62 362 56 HOH HOH . E 5 HOH A 63 363 25 HOH HOH . E 5 HOH A 64 364 82 HOH HOH . E 5 HOH A 65 365 107 HOH HOH . E 5 HOH A 66 366 47 HOH HOH . E 5 HOH A 67 367 106 HOH HOH . E 5 HOH A 68 368 41 HOH HOH . E 5 HOH A 69 369 6 HOH HOH . E 5 HOH A 70 370 23 HOH HOH . E 5 HOH A 71 371 86 HOH HOH . E 5 HOH A 72 372 34 HOH HOH . E 5 HOH A 73 373 45 HOH HOH . E 5 HOH A 74 374 83 HOH HOH . E 5 HOH A 75 375 14 HOH HOH . E 5 HOH A 76 376 35 HOH HOH . E 5 HOH A 77 377 90 HOH HOH . E 5 HOH A 78 378 24 HOH HOH . E 5 HOH A 79 379 12 HOH HOH . E 5 HOH A 80 380 42 HOH HOH . E 5 HOH A 81 381 61 HOH HOH . E 5 HOH A 82 382 98 HOH HOH . E 5 HOH A 83 383 44 HOH HOH . E 5 HOH A 84 384 104 HOH HOH . E 5 HOH A 85 385 20 HOH HOH . E 5 HOH A 86 386 57 HOH HOH . E 5 HOH A 87 387 105 HOH HOH . E 5 HOH A 88 388 51 HOH HOH . E 5 HOH A 89 389 74 HOH HOH . E 5 HOH A 90 390 50 HOH HOH . E 5 HOH A 91 391 69 HOH HOH . E 5 HOH A 92 392 2 HOH HOH . E 5 HOH A 93 393 99 HOH HOH . E 5 HOH A 94 394 72 HOH HOH . E 5 HOH A 95 395 70 HOH HOH . E 5 HOH A 96 396 97 HOH HOH . E 5 HOH A 97 397 109 HOH HOH . E 5 HOH A 98 398 108 HOH HOH . E 5 HOH A 99 399 79 HOH HOH . E 5 HOH A 100 400 54 HOH HOH . E 5 HOH A 101 401 93 HOH HOH . E 5 HOH A 102 402 71 HOH HOH . E 5 HOH A 103 403 96 HOH HOH . E 5 HOH A 104 404 75 HOH HOH . E 5 HOH A 105 405 66 HOH HOH . E 5 HOH A 106 406 87 HOH HOH . E 5 HOH A 107 407 30 HOH HOH . E 5 HOH A 108 408 84 HOH HOH . E 5 HOH A 109 409 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C30 P4V . . . D 4 -8.148 -13.29 13.947 1 20.19 ? C30 P4V 203 A 1 HETATM 2 C C34 P4V . . . D 4 -6.171 -14.232 12.886 1 20.95 ? C34 P4V 203 A 1 HETATM 3 O O37 P4V . . . D 4 -9.131 -14.292 15.824 1 20.39 ? O37 P4V 203 A 1 HETATM 4 C C49 P4V . . . D 4 -8.594 -9.769 7.058 1 25.72 ? C49 P4V 203 A 1 HETATM 5 O O46 P4V . . . D 4 -7.865 -8.78 7.739 1 22.44 ? O46 P4V 203 A 1 HETATM 6 C C43 P4V . . . D 4 -7.956 -8.804 9.128 1 19.92 ? C43 P4V 203 A 1 HETATM 7 C C42 P4V . . . D 4 -8.143 -10.006 9.761 1 19.32 ? C42 P4V 203 A 1 HETATM 8 C C44 P4V . . . D 4 -7.601 -7.615 9.764 1 23.82 ? C44 P4V 203 A 1 HETATM 9 O O47 P4V . . . D 4 -7.389 -6.473 9.021 1 25.15 ? O47 P4V 203 A 1 HETATM 10 C C48 P4V . . . D 4 -7.625 -5.19 9.633 1 22.96 ? C48 P4V 203 A 1 HETATM 11 C C45 P4V . . . D 4 -7.532 -7.59 11.213 1 18.68 ? C45 P4V 203 A 1 HETATM 12 C C40 P4V . . . D 4 -7.789 -8.778 11.829 1 17.01 ? C40 P4V 203 A 1 HETATM 13 C C5 P4V . . . D 4 -7.756 -8.747 13.363 1 18.69 ? C5 P4V 203 A 1 HETATM 14 C C6 P4V . . . D 4 -7.847 -10.148 14.016 1 19.06 ? C6 P4V 203 A 1 HETATM 15 N N7 P4V . . . D 4 -8.927 -10.989 13.316 1 17.8 ? N7 P4V 203 A 1 HETATM 16 C C1 P4V . . . D 4 -9.285 -12.291 13.886 1 18.79 ? C1 P4V 203 A 1 HETATM 17 C C4 P4V . . . D 4 -8.301 -11.227 12.006 1 18.78 ? C4 P4V 203 A 1 HETATM 18 C C41 P4V . . . D 4 -8.133 -10.006 11.215 1 18.35 ? C41 P4V 203 A 1 HETATM 19 C C3 P4V . . . D 4 -7.192 -12.215 11.804 1 20.23 ? C3 P4V 203 A 1 HETATM 20 C C35 P4V . . . D 4 -7.199 -13.269 12.877 1 18.6 ? C35 P4V 203 A 1 HETATM 21 C C33 P4V . . . D 4 -6.093 -15.208 13.86 1 21.61 ? C33 P4V 203 A 1 HETATM 22 C C32 P4V . . . D 4 -7.076 -15.236 14.875 1 21.06 ? C32 P4V 203 A 1 HETATM 23 O O36 P4V . . . D 4 -7.062 -16.172 15.924 1 23.61 ? O36 P4V 203 A 1 HETATM 24 C C39 P4V . . . D 4 -6.279 -17.411 15.801 1 21.82 ? C39 P4V 203 A 1 HETATM 25 C C31 P4V . . . D 4 -8.141 -14.27 14.851 1 22.79 ? C31 P4V 203 A 1 HETATM 26 C C38 P4V . . . D 4 -8.785 -13.991 17.167 1 23.2 ? C38 P4V 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #