data_7N55 # _model_server_result.job_id '_gwekrKqbLGtf9EAUHs9QQ' _model_server_result.datetime_utc '2024-11-28 01:12:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 7N55 # _exptl.entry_id 7N55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.397 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N55 _cell.length_a 89.635 _cell.length_b 89.635 _cell.length_c 133.761 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -89.635 -89.635 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -89.635 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -89.635 0 5 'crystal symmetry operation' 5_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -89.635 0 0 6 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -89.635 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -1 0 -1 0 0 0 0 -1 -89.635 -89.635 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc7 B MN MN . A MN 201 1_555 H O13 09Y . A 09Y 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc8 B MN MN . A MN 201 1_555 H O15 09Y . A 09Y 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc9 C MN MN . A MN 202 1_555 H O13 09Y . A 09Y 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc10 C MN MN . A MN 202 1_555 H O10 09Y . A 09Y 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc11 C MN MN . A MN 202 1_555 J O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc12 C MN MN . A MN 202 1_555 J O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? # _chem_comp.formula 'C20 H20 N4 O4' _chem_comp.formula_weight 380.397 _chem_comp.id 09Y _chem_comp.mon_nstd_flag . _chem_comp.name 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C14 09Y doub 1 n n O13 C12 09Y sing 2 n n C14 C12 09Y sing 3 n n C14 N16 09Y sing 4 n n C12 C11 09Y doub 5 n n N16 C17 09Y sing 6 n n O10 C09 09Y doub 7 n n C25 C24 09Y sing 8 n n C11 C09 09Y sing 9 n n C11 N18 09Y sing 10 n n C09 N08 09Y sing 11 n n C17 N18 09Y doub 12 n n C17 C19 09Y sing 13 n n C24 C19 09Y doub 14 n y C24 C23 09Y sing 15 n y C19 C20 09Y sing 16 n y N08 C07 09Y sing 17 n n C23 C22 09Y doub 18 n y C07 C06 09Y sing 19 n n C20 C21 09Y doub 20 n y C22 C21 09Y sing 21 n y C06 C05 09Y sing 22 n n C01 O02 09Y sing 23 n n C05 C04 09Y doub 24 n y C05 C26 09Y sing 25 n y C04 C03 09Y sing 26 n y C26 C27 09Y doub 27 n y C03 O02 09Y sing 28 n n C03 N28 09Y doub 29 n y C27 N28 09Y sing 30 n y C20 H1 09Y sing 31 n n C01 H2 09Y sing 32 n n C01 H3 09Y sing 33 n n C01 H4 09Y sing 34 n n C04 H5 09Y sing 35 n n C06 H6 09Y sing 36 n n C06 H7 09Y sing 37 n n C07 H8 09Y sing 38 n n C07 H9 09Y sing 39 n n C21 H10 09Y sing 40 n n C22 H11 09Y sing 41 n n C23 H12 09Y sing 42 n n C25 H13 09Y sing 43 n n C25 H14 09Y sing 44 n n C25 H15 09Y sing 45 n n C26 H16 09Y sing 46 n n C27 H17 09Y sing 47 n n N08 H18 09Y sing 48 n n N16 H19 09Y sing 49 n n O13 H20 09Y sing 50 n n # _atom_sites.entry_id 7N55 _atom_sites.fract_transf_matrix[1][1] 0.011156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 SO4 A 1 203 205 SO4 SO4 . E 3 SO4 A 1 204 206 SO4 SO4 . F 3 SO4 A 1 205 207 SO4 SO4 . G 4 QQ4 A 1 206 401 QQ4 PVP . H 5 09Y A 1 207 402 09Y 514 . I 3 SO4 A 1 208 2 SO4 SO4 . J 6 HOH A 1 301 4 HOH HOH . J 6 HOH A 2 302 2 HOH HOH . J 6 HOH A 3 303 3 HOH HOH . J 6 HOH A 4 304 12 HOH HOH . J 6 HOH A 5 305 5 HOH HOH . J 6 HOH A 6 306 1 HOH HOH . J 6 HOH A 7 307 14 HOH HOH . J 6 HOH A 8 308 6 HOH HOH . J 6 HOH A 9 309 9 HOH HOH . J 6 HOH A 10 310 15 HOH HOH . J 6 HOH A 11 311 7 HOH HOH . J 6 HOH A 12 312 11 HOH HOH . J 6 HOH A 13 313 13 HOH HOH . J 6 HOH A 14 314 8 HOH HOH . J 6 HOH A 15 315 10 HOH HOH . J 6 HOH A 16 316 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 09Y . . . H 5 -15.557 -38.554 -18.098 1 69.99 ? C14 09Y 207 A 1 HETATM 2 C C19 09Y . . . H 5 -13.083 -37.184 -15.365 1 106.33 ? C19 09Y 207 A 1 HETATM 3 C C20 09Y . . . H 5 -13.621 -36.483 -14.3 1 94.37 ? C20 09Y 207 A 1 HETATM 4 C C01 09Y . . . H 5 -10.592 -39.318 -11.838 1 100.08 ? C01 09Y 207 A 1 HETATM 5 C C03 09Y . . . H 5 -12.252 -40.965 -11.664 1 106.84 ? C03 09Y 207 A 1 HETATM 6 C C04 09Y . . . H 5 -12.635 -42.178 -12.21 1 113.29 ? C04 09Y 207 A 1 HETATM 7 C C05 09Y . . . H 5 -13.977 -42.506 -12.311 1 119.31 ? C05 09Y 207 A 1 HETATM 8 C C06 09Y . . . H 5 -14.419 -43.834 -12.915 1 111.67 ? C06 09Y 207 A 1 HETATM 9 C C07 09Y . . . H 5 -14.498 -43.763 -14.437 1 104.92 ? C07 09Y 207 A 1 HETATM 10 C C09 09Y . . . H 5 -14.952 -41.961 -16.139 1 69.24 ? C09 09Y 207 A 1 HETATM 11 C C11 09Y . . . H 5 -14.866 -40.492 -16.54 1 81.32 ? C11 09Y 207 A 1 HETATM 12 C C12 09Y . . . H 5 -15.641 -39.992 -17.711 1 65.02 ? C12 09Y 207 A 1 HETATM 13 C C17 09Y . . . H 5 -13.956 -38.145 -16.165 1 78.1 ? C17 09Y 207 A 1 HETATM 14 C C21 09Y . . . H 5 -12.828 -35.611 -13.575 1 96.78 ? C21 09Y 207 A 1 HETATM 15 C C22 09Y . . . H 5 -11.496 -35.439 -13.918 1 116.71 ? C22 09Y 207 A 1 HETATM 16 C C23 09Y . . . H 5 -10.958 -36.139 -14.984 1 118.39 ? C23 09Y 207 A 1 HETATM 17 C C24 09Y . . . H 5 -11.751 -37.012 -15.708 1 114.85 ? C24 09Y 207 A 1 HETATM 18 C C25 09Y . . . H 5 -11.16 -37.784 -16.884 1 87.08 ? C25 09Y 207 A 1 HETATM 19 C C26 09Y . . . H 5 -14.892 -41.578 -11.837 1 111.42 ? C26 09Y 207 A 1 HETATM 20 C C27 09Y . . . H 5 -14.446 -40.383 -11.297 1 113.45 ? C27 09Y 207 A 1 HETATM 21 N N08 09Y . . . H 5 -14.429 -42.377 -14.854 1 86.2 ? N08 09Y 207 A 1 HETATM 22 N N16 09Y . . . H 5 -14.725 -37.644 -17.334 1 67.98 ? N16 09Y 207 A 1 HETATM 23 N N18 09Y . . . H 5 -14.037 -39.577 -15.776 1 85.83 ? N18 09Y 207 A 1 HETATM 24 N N28 09Y . . . H 5 -13.155 -40.107 -11.222 1 111.99 ? N28 09Y 207 A 1 HETATM 25 O O02 09Y . . . H 5 -10.891 -40.658 -11.575 1 96.4 ? O02 09Y 207 A 1 HETATM 26 O O10 09Y . . . H 5 -15.449 -42.754 -16.865 1 79.47 ? O10 09Y 207 A 1 HETATM 27 O O13 09Y . . . H 5 -16.442 -40.872 -18.448 1 74.43 ? O13 09Y 207 A 1 HETATM 28 O O15 09Y . . . H 5 -16.169 -38.155 -19.029 1 57.82 ? O15 09Y 207 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #