data_7N59 # _model_server_result.job_id odgmz1eKYpod-jRw8gNDpQ _model_server_result.datetime_utc '2024-12-26 19:32:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 7N59 # _exptl.entry_id 7N59 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 612.631 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXIDIZED GLUTATHIONE DISULFIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N59 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H32 N6 O12 S2' _chem_comp.formula_weight 612.631 _chem_comp.id GDS _chem_comp.mon_nstd_flag . _chem_comp.name 'OXIDIZED GLUTATHIONE DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GDS sing 83 n n N1 HN11 GDS sing 84 n n N1 HN12 GDS sing 85 n n CA1 C1 GDS sing 86 n n CA1 CB1 GDS sing 87 n n CA1 HA1 GDS sing 88 n n C1 OE1 GDS doub 89 n n C1 OE2 GDS sing 90 n n OE2 HO2 GDS sing 91 n n CB1 CG1 GDS sing 92 n n CB1 HB11 GDS sing 93 n n CB1 HB12 GDS sing 94 n n CG1 CD1 GDS sing 95 n n CG1 HG11 GDS sing 96 n n CG1 HG12 GDS sing 97 n n CD1 O1 GDS doub 98 n n CD1 N2 GDS sing 99 n n N2 CA2 GDS sing 100 n n N2 HN2 GDS sing 101 n n CA2 C2 GDS sing 102 n n CA2 CB2 GDS sing 103 n n CA2 HA2 GDS sing 104 n n C2 O2 GDS doub 105 n n C2 N3 GDS sing 106 n n CB2 SG2 GDS sing 107 n n CB2 HB21 GDS sing 108 n n CB2 HB22 GDS sing 109 n n SG2 SG5 GDS sing 110 n n N3 CA3 GDS sing 111 n n N3 HN3 GDS sing 112 n n CA3 C3 GDS sing 113 n n CA3 HA31 GDS sing 114 n n CA3 HA32 GDS sing 115 n n C3 OE3 GDS doub 116 n n C3 OE4 GDS sing 117 n n OE4 HO4 GDS sing 118 n n N4 CA4 GDS sing 119 n n N4 C5 GDS sing 120 n n N4 HN4 GDS sing 121 n n CA4 C4 GDS sing 122 n n CA4 HA41 GDS sing 123 n n CA4 HA42 GDS sing 124 n n C4 OE5 GDS doub 125 n n C4 OE6 GDS sing 126 n n OE6 HO6 GDS sing 127 n n C5 O5 GDS doub 128 n n C5 CA5 GDS sing 129 n n CA5 N5 GDS sing 130 n n CA5 CB5 GDS sing 131 n n CA5 HA5 GDS sing 132 n n N5 CD6 GDS sing 133 n n N5 HN5 GDS sing 134 n n CB5 SG5 GDS sing 135 n n CB5 HB51 GDS sing 136 n n CB5 HB52 GDS sing 137 n n CA6 C6 GDS sing 138 n n CA6 N6 GDS sing 139 n n CA6 CB6 GDS sing 140 n n CA6 HA6 GDS sing 141 n n C6 OE7 GDS doub 142 n n C6 OE8 GDS sing 143 n n OE8 HO8 GDS sing 144 n n N6 HN61 GDS sing 145 n n N6 HN62 GDS sing 146 n n CB6 CG6 GDS sing 147 n n CB6 HB61 GDS sing 148 n n CB6 HB62 GDS sing 149 n n CG6 CD6 GDS sing 150 n n CG6 HG61 GDS sing 151 n n CG6 HG62 GDS sing 152 n n CD6 O6 GDS doub 153 n n # _atom_sites.entry_id 7N59 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id GDS _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 801 _pdbx_nonpoly_scheme.auth_seq_num 801 _pdbx_nonpoly_scheme.pdb_mon_id GDS _pdbx_nonpoly_scheme.auth_mon_id GDS _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GDS . . . C 2 120.966 121.557 124.712 0.5 34.28 ? N1 GDS 801 A 1 HETATM 2 C CA1 GDS . . . C 2 121.777 122.59 124.097 0.5 34.28 ? CA1 GDS 801 A 1 HETATM 3 C C1 GDS . . . C 2 121.967 122.269 122.619 0.5 34.28 ? C1 GDS 801 A 1 HETATM 4 O OE1 GDS . . . C 2 120.976 122.265 121.846 0.5 34.28 ? OE1 GDS 801 A 1 HETATM 5 O OE2 GDS . . . C 2 123.116 122.01 122.179 0.5 34.28 ? OE2 GDS 801 A 1 HETATM 6 C CB1 GDS . . . C 2 123.143 122.642 124.776 0.5 34.28 ? CB1 GDS 801 A 1 HETATM 7 C CG1 GDS . . . C 2 123.51 124.103 125.028 0.5 34.28 ? CG1 GDS 801 A 1 HETATM 8 C CD1 GDS . . . C 2 124.728 124.178 125.943 0.5 34.28 ? CD1 GDS 801 A 1 HETATM 9 O O1 GDS . . . C 2 125.419 123.228 126.089 0.5 34.28 ? O1 GDS 801 A 1 HETATM 10 N N2 GDS . . . C 2 125.034 125.415 126.637 0.5 34.28 ? N2 GDS 801 A 1 HETATM 11 C CA2 GDS . . . C 2 126.19 125.507 127.511 0.5 34.28 ? CA2 GDS 801 A 1 HETATM 12 C C2 GDS . . . C 2 125.935 124.709 128.787 0.5 34.28 ? C2 GDS 801 A 1 HETATM 13 O O2 GDS . . . C 2 125.972 125.254 129.838 0.5 34.28 ? O2 GDS 801 A 1 HETATM 14 C CB2 GDS . . . C 2 126.426 126.97 127.877 0.5 34.28 ? CB2 GDS 801 A 1 HETATM 15 S SG2 GDS . . . C 2 128.195 127.368 127.76 0.5 34.28 ? SG2 GDS 801 A 1 HETATM 16 N N3 GDS . . . C 2 125.649 123.289 128.718 0.5 34.28 ? N3 GDS 801 A 1 HETATM 17 C CA3 GDS . . . C 2 125.408 122.543 129.938 0.5 34.28 ? CA3 GDS 801 A 1 HETATM 18 C C3 GDS . . . C 2 125.364 121.052 129.618 0.5 34.28 ? C3 GDS 801 A 1 HETATM 19 O OE3 GDS . . . C 2 124.506 120.316 130.173 0.5 34.28 ? OE3 GDS 801 A 1 HETATM 20 O OE4 GDS . . . C 2 126.186 120.56 128.802 0.5 34.28 ? OE4 GDS 801 A 1 HETATM 21 N N4 GDS . . . C 2 130.855 133.45 128.621 0.5 34.28 ? N4 GDS 801 A 1 HETATM 22 C CA4 GDS . . . C 2 130.445 134.515 129.516 0.5 34.28 ? CA4 GDS 801 A 1 HETATM 23 C C4 GDS . . . C 2 131.664 135.358 129.876 0.5 34.28 ? C4 GDS 801 A 1 HETATM 24 O OE5 GDS . . . C 2 132.763 135.15 129.299 0.5 34.28 ? OE5 GDS 801 A 1 HETATM 25 O OE6 GDS . . . C 2 131.57 136.262 130.748 0.5 34.28 ? OE6 GDS 801 A 1 HETATM 26 C C5 GDS . . . C 2 129.887 132.468 128.17 0.5 34.28 ? C5 GDS 801 A 1 HETATM 27 O O5 GDS . . . C 2 128.761 132.533 128.532 0.5 34.28 ? O5 GDS 801 A 1 HETATM 28 C CA5 GDS . . . C 2 130.326 131.353 127.226 0.5 34.28 ? CA5 GDS 801 A 1 HETATM 29 N N5 GDS . . . C 2 131.741 131.507 126.944 0.5 34.28 ? N5 GDS 801 A 1 HETATM 30 C CB5 GDS . . . C 2 130.055 129.99 127.86 0.5 34.28 ? CB5 GDS 801 A 1 HETATM 31 S SG5 GDS . . . C 2 128.414 129.413 127.333 0.5 34.28 ? SG5 GDS 801 A 1 HETATM 32 C CA6 GDS . . . C 2 134.23 134.249 123.797 0.5 34.28 ? CA6 GDS 801 A 1 HETATM 33 C C6 GDS . . . C 2 135.008 134.237 122.487 0.5 34.28 ? C6 GDS 801 A 1 HETATM 34 O OE7 GDS . . . C 2 136.265 134.273 122.5 0.5 34.28 ? OE7 GDS 801 A 1 HETATM 35 O OE8 GDS . . . C 2 134.39 134.191 121.392 0.5 34.28 ? OE8 GDS 801 A 1 HETATM 36 N N6 GDS . . . C 2 133.059 135.089 123.651 0.5 34.28 ? N6 GDS 801 A 1 HETATM 37 C CB6 GDS . . . C 2 133.786 132.828 124.119 0.5 34.28 ? CB6 GDS 801 A 1 HETATM 38 C CG6 GDS . . . C 2 133.631 132.675 125.629 0.5 34.28 ? CG6 GDS 801 A 1 HETATM 39 C CD6 GDS . . . C 2 132.154 132.482 125.952 0.5 34.28 ? CD6 GDS 801 A 1 HETATM 40 O O6 GDS . . . C 2 131.34 133.133 125.391 0.5 34.28 ? O6 GDS 801 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #