data_7N5C # _model_server_result.job_id lx3VEyStrNyHHSV-5zUdSA _model_server_result.datetime_utc '2024-10-20 00:31:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n5c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 7N5C # _exptl.entry_id 7N5C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.34 _cell.angle_gamma 90 _cell.entry_id 7N5C _cell.length_a 57.086 _cell.length_b 74.113 _cell.length_c 114.295 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf4 C SG CYS 4 C CYS 4 1_555 D SG CYS 94 D CYS 110 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.464 ? disulf ? disulf5 D SG CYS 22 D CYS 23 1_555 D SG CYS 88 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf6 D SG CYS 133 D CYS 149 1_555 D SG CYS 183 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 158 D CYS 174 1_555 E SG CYS 167 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 E SG CYS 23 E CYS 23 1_555 E SG CYS 91 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf9 E SG CYS 141 E CYS 154 1_555 E SG CYS 206 E CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc1 H O HOH . B HOH 116 2_545 F NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc2 H O HOH . B HOH 125 2_545 F NA NA . E NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7N5C _atom_sites.fract_transf_matrix[1][1] 0.017517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002881 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NA E 1 301 1 NA NA . G 7 HOH A 1 301 201 HOH HOH . G 7 HOH A 2 302 186 HOH HOH . G 7 HOH A 3 303 29 HOH HOH . G 7 HOH A 4 304 47 HOH HOH . G 7 HOH A 5 305 53 HOH HOH . G 7 HOH A 6 306 260 HOH HOH . G 7 HOH A 7 307 7 HOH HOH . G 7 HOH A 8 308 225 HOH HOH . G 7 HOH A 9 309 40 HOH HOH . G 7 HOH A 10 310 57 HOH HOH . G 7 HOH A 11 311 103 HOH HOH . G 7 HOH A 12 312 39 HOH HOH . G 7 HOH A 13 313 165 HOH HOH . G 7 HOH A 14 314 42 HOH HOH . G 7 HOH A 15 315 99 HOH HOH . G 7 HOH A 16 316 192 HOH HOH . G 7 HOH A 17 317 113 HOH HOH . G 7 HOH A 18 318 152 HOH HOH . G 7 HOH A 19 319 234 HOH HOH . G 7 HOH A 20 320 227 HOH HOH . G 7 HOH A 21 321 130 HOH HOH . G 7 HOH A 22 322 223 HOH HOH . G 7 HOH A 23 323 37 HOH HOH . G 7 HOH A 24 324 80 HOH HOH . G 7 HOH A 25 325 107 HOH HOH . G 7 HOH A 26 326 110 HOH HOH . G 7 HOH A 27 327 16 HOH HOH . G 7 HOH A 28 328 69 HOH HOH . G 7 HOH A 29 329 235 HOH HOH . G 7 HOH A 30 330 49 HOH HOH . G 7 HOH A 31 331 242 HOH HOH . G 7 HOH A 32 332 125 HOH HOH . G 7 HOH A 33 333 31 HOH HOH . G 7 HOH A 34 334 61 HOH HOH . G 7 HOH A 35 335 233 HOH HOH . G 7 HOH A 36 336 48 HOH HOH . G 7 HOH A 37 337 27 HOH HOH . G 7 HOH A 38 338 8 HOH HOH . G 7 HOH A 39 339 10 HOH HOH . G 7 HOH A 40 340 191 HOH HOH . G 7 HOH A 41 341 112 HOH HOH . G 7 HOH A 42 342 248 HOH HOH . G 7 HOH A 43 343 238 HOH HOH . G 7 HOH A 44 344 45 HOH HOH . G 7 HOH A 45 345 122 HOH HOH . G 7 HOH A 46 346 144 HOH HOH . G 7 HOH A 47 347 259 HOH HOH . G 7 HOH A 48 348 135 HOH HOH . G 7 HOH A 49 349 172 HOH HOH . G 7 HOH A 50 350 91 HOH HOH . G 7 HOH A 51 351 101 HOH HOH . G 7 HOH A 52 352 127 HOH HOH . G 7 HOH A 53 353 156 HOH HOH . G 7 HOH A 54 354 180 HOH HOH . G 7 HOH A 55 355 88 HOH HOH . G 7 HOH A 56 356 123 HOH HOH . G 7 HOH A 57 357 35 HOH HOH . G 7 HOH A 58 358 261 HOH HOH . G 7 HOH A 59 359 106 HOH HOH . G 7 HOH A 60 360 109 HOH HOH . G 7 HOH A 61 361 255 HOH HOH . G 7 HOH A 62 362 41 HOH HOH . G 7 HOH A 63 363 4 HOH HOH . G 7 HOH A 64 364 167 HOH HOH . G 7 HOH A 65 365 52 HOH HOH . G 7 HOH A 66 366 203 HOH HOH . G 7 HOH A 67 367 264 HOH HOH . G 7 HOH A 68 368 96 HOH HOH . G 7 HOH A 69 369 239 HOH HOH . G 7 HOH A 70 370 85 HOH HOH . G 7 HOH A 71 371 211 HOH HOH . G 7 HOH A 72 372 160 HOH HOH . G 7 HOH A 73 373 58 HOH HOH . G 7 HOH A 74 374 195 HOH HOH . G 7 HOH A 75 375 210 HOH HOH . G 7 HOH A 76 376 84 HOH HOH . G 7 HOH A 77 377 205 HOH HOH . G 7 HOH A 78 378 68 HOH HOH . G 7 HOH A 79 379 207 HOH HOH . G 7 HOH A 80 380 185 HOH HOH . G 7 HOH A 81 381 237 HOH HOH . G 7 HOH A 82 382 179 HOH HOH . G 7 HOH A 83 383 218 HOH HOH . G 7 HOH A 84 384 194 HOH HOH . G 7 HOH A 85 385 197 HOH HOH . G 7 HOH A 86 386 257 HOH HOH . G 7 HOH A 87 387 231 HOH HOH . G 7 HOH A 88 388 196 HOH HOH . G 7 HOH A 89 389 157 HOH HOH . G 7 HOH A 90 390 87 HOH HOH . G 7 HOH A 91 391 200 HOH HOH . H 7 HOH B 1 101 155 HOH HOH . H 7 HOH B 2 102 95 HOH HOH . H 7 HOH B 3 103 38 HOH HOH . H 7 HOH B 4 104 161 HOH HOH . H 7 HOH B 5 105 34 HOH HOH . H 7 HOH B 6 106 26 HOH HOH . H 7 HOH B 7 107 188 HOH HOH . H 7 HOH B 8 108 139 HOH HOH . H 7 HOH B 9 109 236 HOH HOH . H 7 HOH B 10 110 22 HOH HOH . H 7 HOH B 11 111 249 HOH HOH . H 7 HOH B 12 112 70 HOH HOH . H 7 HOH B 13 113 176 HOH HOH . H 7 HOH B 14 114 119 HOH HOH . H 7 HOH B 15 115 181 HOH HOH . H 7 HOH B 16 116 154 HOH HOH . H 7 HOH B 17 117 13 HOH HOH . H 7 HOH B 18 118 145 HOH HOH . H 7 HOH B 19 119 163 HOH HOH . H 7 HOH B 20 120 116 HOH HOH . H 7 HOH B 21 121 232 HOH HOH . H 7 HOH B 22 122 141 HOH HOH . H 7 HOH B 23 123 121 HOH HOH . H 7 HOH B 24 124 132 HOH HOH . H 7 HOH B 25 125 138 HOH HOH . H 7 HOH B 26 126 215 HOH HOH . H 7 HOH B 27 127 220 HOH HOH . H 7 HOH B 28 128 206 HOH HOH . H 7 HOH B 29 129 104 HOH HOH . H 7 HOH B 30 130 90 HOH HOH . I 7 HOH C 1 101 20 HOH HOH . I 7 HOH C 2 102 11 HOH HOH . I 7 HOH C 3 103 62 HOH HOH . I 7 HOH C 4 104 263 HOH HOH . J 7 HOH D 1 301 216 HOH HOH . J 7 HOH D 2 302 44 HOH HOH . J 7 HOH D 3 303 120 HOH HOH . J 7 HOH D 4 304 12 HOH HOH . J 7 HOH D 5 305 25 HOH HOH . J 7 HOH D 6 306 50 HOH HOH . J 7 HOH D 7 307 246 HOH HOH . J 7 HOH D 8 308 142 HOH HOH . J 7 HOH D 9 309 24 HOH HOH . J 7 HOH D 10 310 55 HOH HOH . J 7 HOH D 11 311 187 HOH HOH . J 7 HOH D 12 312 189 HOH HOH . J 7 HOH D 13 313 143 HOH HOH . J 7 HOH D 14 314 229 HOH HOH . J 7 HOH D 15 315 169 HOH HOH . J 7 HOH D 16 316 28 HOH HOH . J 7 HOH D 17 317 82 HOH HOH . J 7 HOH D 18 318 240 HOH HOH . J 7 HOH D 19 319 184 HOH HOH . J 7 HOH D 20 320 177 HOH HOH . J 7 HOH D 21 321 15 HOH HOH . J 7 HOH D 22 322 171 HOH HOH . J 7 HOH D 23 323 65 HOH HOH . J 7 HOH D 24 324 175 HOH HOH . J 7 HOH D 25 325 77 HOH HOH . J 7 HOH D 26 326 256 HOH HOH . J 7 HOH D 27 327 134 HOH HOH . J 7 HOH D 28 328 78 HOH HOH . J 7 HOH D 29 329 30 HOH HOH . J 7 HOH D 30 330 1 HOH HOH . J 7 HOH D 31 331 46 HOH HOH . J 7 HOH D 32 332 36 HOH HOH . J 7 HOH D 33 333 183 HOH HOH . J 7 HOH D 34 334 202 HOH HOH . J 7 HOH D 35 335 75 HOH HOH . J 7 HOH D 36 336 251 HOH HOH . J 7 HOH D 37 337 193 HOH HOH . J 7 HOH D 38 338 92 HOH HOH . J 7 HOH D 39 339 67 HOH HOH . J 7 HOH D 40 340 79 HOH HOH . J 7 HOH D 41 341 258 HOH HOH . J 7 HOH D 42 342 224 HOH HOH . J 7 HOH D 43 343 212 HOH HOH . J 7 HOH D 44 344 19 HOH HOH . J 7 HOH D 45 345 228 HOH HOH . J 7 HOH D 46 346 204 HOH HOH . J 7 HOH D 47 347 136 HOH HOH . J 7 HOH D 48 348 253 HOH HOH . J 7 HOH D 49 349 230 HOH HOH . J 7 HOH D 50 350 209 HOH HOH . J 7 HOH D 51 351 250 HOH HOH . K 7 HOH E 1 401 114 HOH HOH . K 7 HOH E 2 402 133 HOH HOH . K 7 HOH E 3 403 6 HOH HOH . K 7 HOH E 4 404 173 HOH HOH . K 7 HOH E 5 405 76 HOH HOH . K 7 HOH E 6 406 81 HOH HOH . K 7 HOH E 7 407 98 HOH HOH . K 7 HOH E 8 408 66 HOH HOH . K 7 HOH E 9 409 245 HOH HOH . K 7 HOH E 10 410 64 HOH HOH . K 7 HOH E 11 411 74 HOH HOH . K 7 HOH E 12 412 14 HOH HOH . K 7 HOH E 13 413 115 HOH HOH . K 7 HOH E 14 414 153 HOH HOH . K 7 HOH E 15 415 129 HOH HOH . K 7 HOH E 16 416 86 HOH HOH . K 7 HOH E 17 417 174 HOH HOH . K 7 HOH E 18 418 63 HOH HOH . K 7 HOH E 19 419 198 HOH HOH . K 7 HOH E 20 420 158 HOH HOH . K 7 HOH E 21 421 252 HOH HOH . K 7 HOH E 22 422 190 HOH HOH . K 7 HOH E 23 423 168 HOH HOH . K 7 HOH E 24 424 18 HOH HOH . K 7 HOH E 25 425 94 HOH HOH . K 7 HOH E 26 426 102 HOH HOH . K 7 HOH E 27 427 23 HOH HOH . K 7 HOH E 28 428 124 HOH HOH . K 7 HOH E 29 429 33 HOH HOH . K 7 HOH E 30 430 217 HOH HOH . K 7 HOH E 31 431 73 HOH HOH . K 7 HOH E 32 432 128 HOH HOH . K 7 HOH E 33 433 213 HOH HOH . K 7 HOH E 34 434 9 HOH HOH . K 7 HOH E 35 435 221 HOH HOH . K 7 HOH E 36 436 117 HOH HOH . K 7 HOH E 37 437 5 HOH HOH . K 7 HOH E 38 438 56 HOH HOH . K 7 HOH E 39 439 214 HOH HOH . K 7 HOH E 40 440 118 HOH HOH . K 7 HOH E 41 441 60 HOH HOH . K 7 HOH E 42 442 164 HOH HOH . K 7 HOH E 43 443 126 HOH HOH . K 7 HOH E 44 444 150 HOH HOH . K 7 HOH E 45 445 178 HOH HOH . K 7 HOH E 46 446 148 HOH HOH . K 7 HOH E 47 447 182 HOH HOH . K 7 HOH E 48 448 83 HOH HOH . K 7 HOH E 49 449 254 HOH HOH . K 7 HOH E 50 450 32 HOH HOH . K 7 HOH E 51 451 149 HOH HOH . K 7 HOH E 52 452 72 HOH HOH . K 7 HOH E 53 453 137 HOH HOH . K 7 HOH E 54 454 105 HOH HOH . K 7 HOH E 55 455 71 HOH HOH . K 7 HOH E 56 456 226 HOH HOH . K 7 HOH E 57 457 147 HOH HOH . K 7 HOH E 58 458 59 HOH HOH . K 7 HOH E 59 459 54 HOH HOH . K 7 HOH E 60 460 100 HOH HOH . K 7 HOH E 61 461 265 HOH HOH . K 7 HOH E 62 462 170 HOH HOH . K 7 HOH E 63 463 108 HOH HOH . K 7 HOH E 64 464 262 HOH HOH . K 7 HOH E 65 465 21 HOH HOH . K 7 HOH E 66 466 89 HOH HOH . K 7 HOH E 67 467 151 HOH HOH . K 7 HOH E 68 468 146 HOH HOH . K 7 HOH E 69 469 243 HOH HOH . K 7 HOH E 70 470 93 HOH HOH . K 7 HOH E 71 471 241 HOH HOH . K 7 HOH E 72 472 43 HOH HOH . K 7 HOH E 73 473 159 HOH HOH . K 7 HOH E 74 474 131 HOH HOH . K 7 HOH E 75 475 97 HOH HOH . K 7 HOH E 76 476 140 HOH HOH . K 7 HOH E 77 477 51 HOH HOH . K 7 HOH E 78 478 17 HOH HOH . K 7 HOH E 79 479 222 HOH HOH . K 7 HOH E 80 480 162 HOH HOH . K 7 HOH E 81 481 199 HOH HOH . K 7 HOH E 82 482 219 HOH HOH . K 7 HOH E 83 483 166 HOH HOH . K 7 HOH E 84 484 208 HOH HOH . K 7 HOH E 85 485 244 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 17.931 _atom_site.Cartn_y -41.024 _atom_site.Cartn_z 23.561 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.26 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #