data_7N5Y # _model_server_result.job_id OiJp4dB0bMVNmRNzcsdmFg _model_server_result.datetime_utc '2025-01-11 07:09:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 7N5Y # _exptl.entry_id 7N5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N5Y _cell.length_a 72.717 _cell.length_b 104.729 _cell.length_c 38.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 105 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 481 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id 0CI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 0CI _struct_conn.ptnr2_auth_seq_id 702 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.635 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 131 n n S C1 DMS sing 132 n n S C2 DMS sing 133 n n C1 H11 DMS sing 134 n n C1 H12 DMS sing 135 n n C1 H13 DMS sing 136 n n C2 H21 DMS sing 137 n n C2 H22 DMS sing 138 n n C2 H23 DMS sing 139 n n # _atom_sites.entry_id 7N5Y _atom_sites.fract_transf_matrix[1][1] 0.013752 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD A 1 701 670 IMD IMD . C 3 0CI A 1 702 700 0CI LIG . D 4 DMS A 1 703 701 DMS DMS . E 5 HOH A 1 801 35 HOH HOH . E 5 HOH A 2 802 199 HOH HOH . E 5 HOH A 3 803 202 HOH HOH . E 5 HOH A 4 804 19 HOH HOH . E 5 HOH A 5 805 212 HOH HOH . E 5 HOH A 6 806 63 HOH HOH . E 5 HOH A 7 807 83 HOH HOH . E 5 HOH A 8 808 66 HOH HOH . E 5 HOH A 9 809 152 HOH HOH . E 5 HOH A 10 810 165 HOH HOH . E 5 HOH A 11 811 30 HOH HOH . E 5 HOH A 12 812 43 HOH HOH . E 5 HOH A 13 813 7 HOH HOH . E 5 HOH A 14 814 144 HOH HOH . E 5 HOH A 15 815 32 HOH HOH . E 5 HOH A 16 816 48 HOH HOH . E 5 HOH A 17 817 86 HOH HOH . E 5 HOH A 18 818 115 HOH HOH . E 5 HOH A 19 819 166 HOH HOH . E 5 HOH A 20 820 59 HOH HOH . E 5 HOH A 21 821 57 HOH HOH . E 5 HOH A 22 822 171 HOH HOH . E 5 HOH A 23 823 82 HOH HOH . E 5 HOH A 24 824 103 HOH HOH . E 5 HOH A 25 825 12 HOH HOH . E 5 HOH A 26 826 18 HOH HOH . E 5 HOH A 27 827 75 HOH HOH . E 5 HOH A 28 828 53 HOH HOH . E 5 HOH A 29 829 161 HOH HOH . E 5 HOH A 30 830 112 HOH HOH . E 5 HOH A 31 831 11 HOH HOH . E 5 HOH A 32 832 110 HOH HOH . E 5 HOH A 33 833 214 HOH HOH . E 5 HOH A 34 834 8 HOH HOH . E 5 HOH A 35 835 13 HOH HOH . E 5 HOH A 36 836 76 HOH HOH . E 5 HOH A 37 837 42 HOH HOH . E 5 HOH A 38 838 54 HOH HOH . E 5 HOH A 39 839 34 HOH HOH . E 5 HOH A 40 840 23 HOH HOH . E 5 HOH A 41 841 160 HOH HOH . E 5 HOH A 42 842 143 HOH HOH . E 5 HOH A 43 843 87 HOH HOH . E 5 HOH A 44 844 138 HOH HOH . E 5 HOH A 45 845 84 HOH HOH . E 5 HOH A 46 846 104 HOH HOH . E 5 HOH A 47 847 114 HOH HOH . E 5 HOH A 48 848 4 HOH HOH . E 5 HOH A 49 849 72 HOH HOH . E 5 HOH A 50 850 10 HOH HOH . E 5 HOH A 51 851 69 HOH HOH . E 5 HOH A 52 852 81 HOH HOH . E 5 HOH A 53 853 20 HOH HOH . E 5 HOH A 54 854 68 HOH HOH . E 5 HOH A 55 855 50 HOH HOH . E 5 HOH A 56 856 49 HOH HOH . E 5 HOH A 57 857 39 HOH HOH . E 5 HOH A 58 858 149 HOH HOH . E 5 HOH A 59 859 159 HOH HOH . E 5 HOH A 60 860 198 HOH HOH . E 5 HOH A 61 861 96 HOH HOH . E 5 HOH A 62 862 89 HOH HOH . E 5 HOH A 63 863 124 HOH HOH . E 5 HOH A 64 864 60 HOH HOH . E 5 HOH A 65 865 55 HOH HOH . E 5 HOH A 66 866 17 HOH HOH . E 5 HOH A 67 867 180 HOH HOH . E 5 HOH A 68 868 21 HOH HOH . E 5 HOH A 69 869 28 HOH HOH . E 5 HOH A 70 870 24 HOH HOH . E 5 HOH A 71 871 215 HOH HOH . E 5 HOH A 72 872 93 HOH HOH . E 5 HOH A 73 873 94 HOH HOH . E 5 HOH A 74 874 218 HOH HOH . E 5 HOH A 75 875 154 HOH HOH . E 5 HOH A 76 876 51 HOH HOH . E 5 HOH A 77 877 33 HOH HOH . E 5 HOH A 78 878 129 HOH HOH . E 5 HOH A 79 879 1 HOH HOH . E 5 HOH A 80 880 95 HOH HOH . E 5 HOH A 81 881 186 HOH HOH . E 5 HOH A 82 882 25 HOH HOH . E 5 HOH A 83 883 99 HOH HOH . E 5 HOH A 84 884 58 HOH HOH . E 5 HOH A 85 885 146 HOH HOH . E 5 HOH A 86 886 38 HOH HOH . E 5 HOH A 87 887 90 HOH HOH . E 5 HOH A 88 888 105 HOH HOH . E 5 HOH A 89 889 29 HOH HOH . E 5 HOH A 90 890 45 HOH HOH . E 5 HOH A 91 891 141 HOH HOH . E 5 HOH A 92 892 158 HOH HOH . E 5 HOH A 93 893 188 HOH HOH . E 5 HOH A 94 894 9 HOH HOH . E 5 HOH A 95 895 62 HOH HOH . E 5 HOH A 96 896 113 HOH HOH . E 5 HOH A 97 897 31 HOH HOH . E 5 HOH A 98 898 101 HOH HOH . E 5 HOH A 99 899 47 HOH HOH . E 5 HOH A 100 900 179 HOH HOH . E 5 HOH A 101 901 173 HOH HOH . E 5 HOH A 102 902 67 HOH HOH . E 5 HOH A 103 903 148 HOH HOH . E 5 HOH A 104 904 91 HOH HOH . E 5 HOH A 105 905 142 HOH HOH . E 5 HOH A 106 906 2 HOH HOH . E 5 HOH A 107 907 22 HOH HOH . E 5 HOH A 108 908 197 HOH HOH . E 5 HOH A 109 909 70 HOH HOH . E 5 HOH A 110 910 107 HOH HOH . E 5 HOH A 111 911 190 HOH HOH . E 5 HOH A 112 912 37 HOH HOH . E 5 HOH A 113 913 195 HOH HOH . E 5 HOH A 114 914 15 HOH HOH . E 5 HOH A 115 915 122 HOH HOH . E 5 HOH A 116 916 16 HOH HOH . E 5 HOH A 117 917 192 HOH HOH . E 5 HOH A 118 918 109 HOH HOH . E 5 HOH A 119 919 172 HOH HOH . E 5 HOH A 120 920 116 HOH HOH . E 5 HOH A 121 921 127 HOH HOH . E 5 HOH A 122 922 182 HOH HOH . E 5 HOH A 123 923 100 HOH HOH . E 5 HOH A 124 924 162 HOH HOH . E 5 HOH A 125 925 117 HOH HOH . E 5 HOH A 126 926 52 HOH HOH . E 5 HOH A 127 927 56 HOH HOH . E 5 HOH A 128 928 64 HOH HOH . E 5 HOH A 129 929 88 HOH HOH . E 5 HOH A 130 930 204 HOH HOH . E 5 HOH A 131 931 6 HOH HOH . E 5 HOH A 132 932 121 HOH HOH . E 5 HOH A 133 933 5 HOH HOH . E 5 HOH A 134 934 61 HOH HOH . E 5 HOH A 135 935 150 HOH HOH . E 5 HOH A 136 936 193 HOH HOH . E 5 HOH A 137 937 65 HOH HOH . E 5 HOH A 138 938 77 HOH HOH . E 5 HOH A 139 939 102 HOH HOH . E 5 HOH A 140 940 123 HOH HOH . E 5 HOH A 141 941 14 HOH HOH . E 5 HOH A 142 942 151 HOH HOH . E 5 HOH A 143 943 200 HOH HOH . E 5 HOH A 144 944 41 HOH HOH . E 5 HOH A 145 945 207 HOH HOH . E 5 HOH A 146 946 111 HOH HOH . E 5 HOH A 147 947 71 HOH HOH . E 5 HOH A 148 948 92 HOH HOH . E 5 HOH A 149 949 118 HOH HOH . E 5 HOH A 150 950 73 HOH HOH . E 5 HOH A 151 951 44 HOH HOH . E 5 HOH A 152 952 189 HOH HOH . E 5 HOH A 153 953 145 HOH HOH . E 5 HOH A 154 954 27 HOH HOH . E 5 HOH A 155 955 80 HOH HOH . E 5 HOH A 156 956 3 HOH HOH . E 5 HOH A 157 957 167 HOH HOH . E 5 HOH A 158 958 163 HOH HOH . E 5 HOH A 159 959 97 HOH HOH . E 5 HOH A 160 960 185 HOH HOH . E 5 HOH A 161 961 208 HOH HOH . E 5 HOH A 162 962 125 HOH HOH . E 5 HOH A 163 963 178 HOH HOH . E 5 HOH A 164 964 205 HOH HOH . E 5 HOH A 165 965 206 HOH HOH . E 5 HOH A 166 966 175 HOH HOH . E 5 HOH A 167 967 119 HOH HOH . E 5 HOH A 168 968 131 HOH HOH . E 5 HOH A 169 969 184 HOH HOH . E 5 HOH A 170 970 130 HOH HOH . E 5 HOH A 171 971 136 HOH HOH . E 5 HOH A 172 972 196 HOH HOH . E 5 HOH A 173 973 36 HOH HOH . E 5 HOH A 174 974 98 HOH HOH . E 5 HOH A 175 975 74 HOH HOH . E 5 HOH A 176 976 191 HOH HOH . E 5 HOH A 177 977 133 HOH HOH . E 5 HOH A 178 978 26 HOH HOH . E 5 HOH A 179 979 108 HOH HOH . E 5 HOH A 180 980 132 HOH HOH . E 5 HOH A 181 981 201 HOH HOH . E 5 HOH A 182 982 211 HOH HOH . E 5 HOH A 183 983 128 HOH HOH . E 5 HOH A 184 984 137 HOH HOH . E 5 HOH A 185 985 85 HOH HOH . E 5 HOH A 186 986 153 HOH HOH . E 5 HOH A 187 987 157 HOH HOH . E 5 HOH A 188 988 217 HOH HOH . E 5 HOH A 189 989 164 HOH HOH . E 5 HOH A 190 990 46 HOH HOH . E 5 HOH A 191 991 174 HOH HOH . E 5 HOH A 192 992 40 HOH HOH . E 5 HOH A 193 993 181 HOH HOH . E 5 HOH A 194 994 209 HOH HOH . E 5 HOH A 195 995 79 HOH HOH . E 5 HOH A 196 996 134 HOH HOH . E 5 HOH A 197 997 170 HOH HOH . E 5 HOH A 198 998 183 HOH HOH . E 5 HOH A 199 999 216 HOH HOH . E 5 HOH A 200 1000 106 HOH HOH . E 5 HOH A 201 1001 120 HOH HOH . E 5 HOH A 202 1002 177 HOH HOH . E 5 HOH A 203 1003 78 HOH HOH . E 5 HOH A 204 1004 169 HOH HOH . E 5 HOH A 205 1005 187 HOH HOH . E 5 HOH A 206 1006 156 HOH HOH . E 5 HOH A 207 1007 139 HOH HOH . E 5 HOH A 208 1008 126 HOH HOH . E 5 HOH A 209 1009 213 HOH HOH . E 5 HOH A 210 1010 194 HOH HOH . E 5 HOH A 211 1011 140 HOH HOH . E 5 HOH A 212 1012 135 HOH HOH . E 5 HOH A 213 1013 168 HOH HOH . E 5 HOH A 214 1014 147 HOH HOH . E 5 HOH A 215 1015 155 HOH HOH . E 5 HOH A 216 1016 176 HOH HOH . E 5 HOH A 217 1017 203 HOH HOH . E 5 HOH A 218 1018 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 -24.26 11.901 0.477 1 30.69 ? S DMS 703 A 1 HETATM 2 O O DMS . . . D 4 -23.347 11.951 -0.715 1 34.95 ? O DMS 703 A 1 HETATM 3 C C1 DMS . . . D 4 -24.647 13.595 0.835 1 28.38 ? C1 DMS 703 A 1 HETATM 4 C C2 DMS . . . D 4 -23.215 11.591 1.859 1 22.56 ? C2 DMS 703 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #