data_7N6C # _model_server_result.job_id XIlzz6I0MYI42BN9vC0fNQ _model_server_result.datetime_utc '2025-07-28 04:26:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 7N6C # _exptl.entry_id 7N6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N6C _cell.length_a 53.35 _cell.length_b 64.89 _cell.length_c 71.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N ? 2 K N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7N6C _atom_sites.fract_transf_matrix[1][1] 0.018744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013908 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 301 GOL GOL . D 3 TRS A 1 302 501 TRS TRS . E 4 EDO A 1 303 701 EDO EDO . F 5 PEG A 1 304 901 PEG PEG . G 4 EDO A 1 305 1101 EDO EDO . H 4 EDO A 1 306 1301 EDO EDO . I 4 EDO A 1 307 1401 EDO EDO . J 2 GOL B 1 201 201 GOL GOL . K 2 GOL B 1 202 401 GOL GOL . L 4 EDO B 1 203 501 EDO EDO . M 6 HOH A 1 401 48 HOH HOH . M 6 HOH A 2 402 66 HOH HOH . M 6 HOH A 3 403 107 HOH HOH . M 6 HOH A 4 404 110 HOH HOH . M 6 HOH A 5 405 22 HOH HOH . M 6 HOH A 6 406 15 HOH HOH . M 6 HOH A 7 407 53 HOH HOH . M 6 HOH A 8 408 2 HOH HOH . M 6 HOH A 9 409 129 HOH HOH . M 6 HOH A 10 410 12 HOH HOH . M 6 HOH A 11 411 27 HOH HOH . M 6 HOH A 12 412 1 HOH HOH . M 6 HOH A 13 413 82 HOH HOH . M 6 HOH A 14 414 108 HOH HOH . M 6 HOH A 15 415 26 HOH HOH . M 6 HOH A 16 416 3 HOH HOH . M 6 HOH A 17 417 7 HOH HOH . M 6 HOH A 18 418 25 HOH HOH . M 6 HOH A 19 419 31 HOH HOH . M 6 HOH A 20 420 14 HOH HOH . M 6 HOH A 21 421 32 HOH HOH . M 6 HOH A 22 422 37 HOH HOH . M 6 HOH A 23 423 73 HOH HOH . M 6 HOH A 24 424 38 HOH HOH . M 6 HOH A 25 425 6 HOH HOH . M 6 HOH A 26 426 9 HOH HOH . M 6 HOH A 27 427 49 HOH HOH . M 6 HOH A 28 428 56 HOH HOH . M 6 HOH A 29 429 112 HOH HOH . M 6 HOH A 30 430 122 HOH HOH . M 6 HOH A 31 431 11 HOH HOH . M 6 HOH A 32 432 19 HOH HOH . M 6 HOH A 33 433 77 HOH HOH . M 6 HOH A 34 434 61 HOH HOH . M 6 HOH A 35 435 128 HOH HOH . M 6 HOH A 36 436 119 HOH HOH . M 6 HOH A 37 437 8 HOH HOH . M 6 HOH A 38 438 5 HOH HOH . M 6 HOH A 39 439 123 HOH HOH . M 6 HOH A 40 440 18 HOH HOH . M 6 HOH A 41 441 23 HOH HOH . M 6 HOH A 42 442 17 HOH HOH . M 6 HOH A 43 443 46 HOH HOH . M 6 HOH A 44 444 87 HOH HOH . M 6 HOH A 45 445 4 HOH HOH . M 6 HOH A 46 446 120 HOH HOH . M 6 HOH A 47 447 28 HOH HOH . M 6 HOH A 48 448 44 HOH HOH . M 6 HOH A 49 449 35 HOH HOH . M 6 HOH A 50 450 51 HOH HOH . M 6 HOH A 51 451 13 HOH HOH . M 6 HOH A 52 452 10 HOH HOH . M 6 HOH A 53 453 105 HOH HOH . M 6 HOH A 54 454 121 HOH HOH . M 6 HOH A 55 455 117 HOH HOH . M 6 HOH A 56 456 80 HOH HOH . M 6 HOH A 57 457 45 HOH HOH . M 6 HOH A 58 458 111 HOH HOH . M 6 HOH A 59 459 136 HOH HOH . M 6 HOH A 60 460 29 HOH HOH . M 6 HOH A 61 461 81 HOH HOH . M 6 HOH A 62 462 86 HOH HOH . M 6 HOH A 63 463 30 HOH HOH . M 6 HOH A 64 464 104 HOH HOH . M 6 HOH A 65 465 92 HOH HOH . M 6 HOH A 66 466 55 HOH HOH . M 6 HOH A 67 467 133 HOH HOH . M 6 HOH A 68 468 126 HOH HOH . M 6 HOH A 69 469 140 HOH HOH . M 6 HOH A 70 470 57 HOH HOH . M 6 HOH A 71 471 118 HOH HOH . M 6 HOH A 72 472 84 HOH HOH . M 6 HOH A 73 473 72 HOH HOH . M 6 HOH A 74 474 138 HOH HOH . M 6 HOH A 75 475 58 HOH HOH . M 6 HOH A 76 476 94 HOH HOH . M 6 HOH A 77 477 76 HOH HOH . M 6 HOH A 78 478 106 HOH HOH . M 6 HOH A 79 479 88 HOH HOH . M 6 HOH A 80 480 101 HOH HOH . M 6 HOH A 81 481 96 HOH HOH . M 6 HOH A 82 482 135 HOH HOH . N 6 HOH B 1 301 109 HOH HOH . N 6 HOH B 2 302 70 HOH HOH . N 6 HOH B 3 303 16 HOH HOH . N 6 HOH B 4 304 113 HOH HOH . N 6 HOH B 5 305 34 HOH HOH . N 6 HOH B 6 306 59 HOH HOH . N 6 HOH B 7 307 33 HOH HOH . N 6 HOH B 8 308 20 HOH HOH . N 6 HOH B 9 309 141 HOH HOH . N 6 HOH B 10 310 90 HOH HOH . N 6 HOH B 11 311 21 HOH HOH . N 6 HOH B 12 312 116 HOH HOH . N 6 HOH B 13 313 24 HOH HOH . N 6 HOH B 14 314 93 HOH HOH . N 6 HOH B 15 315 127 HOH HOH . N 6 HOH B 16 316 124 HOH HOH . N 6 HOH B 17 317 103 HOH HOH . N 6 HOH B 18 318 97 HOH HOH . N 6 HOH B 19 319 36 HOH HOH . N 6 HOH B 20 320 130 HOH HOH . N 6 HOH B 21 321 67 HOH HOH . N 6 HOH B 22 322 54 HOH HOH . N 6 HOH B 23 323 52 HOH HOH . N 6 HOH B 24 324 139 HOH HOH . N 6 HOH B 25 325 115 HOH HOH . N 6 HOH B 26 326 125 HOH HOH . N 6 HOH B 27 327 65 HOH HOH . N 6 HOH B 28 328 132 HOH HOH . N 6 HOH B 29 329 98 HOH HOH . N 6 HOH B 30 330 114 HOH HOH . N 6 HOH B 31 331 134 HOH HOH . N 6 HOH B 32 332 100 HOH HOH . N 6 HOH B 33 333 85 HOH HOH . N 6 HOH B 34 334 95 HOH HOH . N 6 HOH B 35 335 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 2 -20.816 -23.427 -34.811 1 70.56 ? C1 GOL 201 B 1 HETATM 2 O O1 GOL . . . J 2 -21.594 -22.321 -34.476 1 61.39 ? O1 GOL 201 B 1 HETATM 3 C C2 GOL . . . J 2 -21.5 -24.118 -36.01 1 67.55 ? C2 GOL 201 B 1 HETATM 4 O O2 GOL . . . J 2 -22.797 -24.509 -35.712 1 74.93 ? O2 GOL 201 B 1 HETATM 5 C C3 GOL . . . J 2 -20.591 -25.32 -36.336 1 72.7 ? C3 GOL 201 B 1 HETATM 6 O O3 GOL . . . J 2 -20.486 -26.068 -35.167 1 60.6 ? O3 GOL 201 B 1 HETATM 7 H H11 GOL . . . J 2 -20.745 -24.036 -34.059 1 84.67 ? H11 GOL 201 B 1 HETATM 8 H H12 GOL . . . J 2 -19.914 -23.154 -35.042 1 84.67 ? H12 GOL 201 B 1 HETATM 9 H HO1 GOL . . . J 2 -21.125 -21.765 -34.057 1 73.67 ? HO1 GOL 201 B 1 HETATM 10 H H2 GOL . . . J 2 -21.595 -23.521 -36.769 1 81.06 ? H2 GOL 201 B 1 HETATM 11 H HO2 GOL . . . J 2 -22.789 -25.285 -35.39 1 89.92 ? HO2 GOL 201 B 1 HETATM 12 H H31 GOL . . . J 2 -19.718 -25.021 -36.634 1 87.24 ? H31 GOL 201 B 1 HETATM 13 H H32 GOL . . . J 2 -20.968 -25.853 -37.054 1 87.24 ? H32 GOL 201 B 1 HETATM 14 H HO3 GOL . . . J 2 -21.188 -26.515 -35.056 1 72.72 ? HO3 GOL 201 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #