data_7N72 # _model_server_result.job_id 7pod_DqRK1OM0bNfmWyBMg _model_server_result.datetime_utc '2024-11-21 14:09:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1204}' # _entry.id 7N72 # _exptl.entry_id 7N72 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N72 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 508 A ASP 508 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 A O THR 510 A THR 510 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 A OD1 ASP 873 A ASP 873 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 642 n n CBA CAB Y01 sing 643 n n CBA CAN Y01 sing 644 n n CAN CAJ Y01 sing 645 n n CAJ CAO Y01 sing 646 n n CAO CBB Y01 sing 647 n n CBB CAC Y01 sing 648 n n CBB CBE Y01 sing 649 n n CBE CAP Y01 sing 650 n n CBE CBI Y01 sing 651 n n CAP CAQ Y01 sing 652 n n CAQ CBG Y01 sing 653 n n CBG CBI Y01 sing 654 n n CBG CBD Y01 sing 655 n n CBI CAE Y01 sing 656 n n CBI CAU Y01 sing 657 n n CAU CAS Y01 sing 658 n n CAS CBF Y01 sing 659 n n CBF CBD Y01 sing 660 n n CBF CBH Y01 sing 661 n n CBD CAK Y01 sing 662 n n CAK CAI Y01 sing 663 n n CAI CAZ Y01 doub 664 n n CAZ CAV Y01 sing 665 n n CAZ CBH Y01 sing 666 n n CAV CBC Y01 sing 667 n n CBH CAD Y01 sing 668 n n CBH CAT Y01 sing 669 n n CAT CAR Y01 sing 670 n n CAR CBC Y01 sing 671 n n CBC OAW Y01 sing 672 n n OAW CAY Y01 sing 673 n n CAY OAG Y01 doub 674 n n CAY CAM Y01 sing 675 n n CAM CAL Y01 sing 676 n n CAL CAX Y01 sing 677 n n CAX OAH Y01 sing 678 n n CAX OAF Y01 doub 679 n n CAA HAA1 Y01 sing 680 n n CAA HAA2 Y01 sing 681 n n CAA HAA3 Y01 sing 682 n n CBA HBA Y01 sing 683 n n CAB HAB1 Y01 sing 684 n n CAB HAB2 Y01 sing 685 n n CAB HAB3 Y01 sing 686 n n CAN HAN1 Y01 sing 687 n n CAN HAN2 Y01 sing 688 n n CAJ HAJ1 Y01 sing 689 n n CAJ HAJ2 Y01 sing 690 n n CAO HAO1 Y01 sing 691 n n CAO HAO2 Y01 sing 692 n n CBB HBB Y01 sing 693 n n CAC HAC1 Y01 sing 694 n n CAC HAC2 Y01 sing 695 n n CAC HAC3 Y01 sing 696 n n CBE HBE Y01 sing 697 n n CAP HAP1 Y01 sing 698 n n CAP HAP2 Y01 sing 699 n n CAQ HAQ1 Y01 sing 700 n n CAQ HAQ2 Y01 sing 701 n n CBG HBG Y01 sing 702 n n CBD HBD Y01 sing 703 n n CAE HAE1 Y01 sing 704 n n CAE HAE2 Y01 sing 705 n n CAE HAE3 Y01 sing 706 n n CAU HAU1 Y01 sing 707 n n CAU HAU2 Y01 sing 708 n n CAS HAS1 Y01 sing 709 n n CAS HAS2 Y01 sing 710 n n CBF HBF Y01 sing 711 n n CAK HAK1 Y01 sing 712 n n CAK HAK2 Y01 sing 713 n n CAI HAI Y01 sing 714 n n CAV HAV1 Y01 sing 715 n n CAV HAV2 Y01 sing 716 n n CBC HBC Y01 sing 717 n n CAD HAD1 Y01 sing 718 n n CAD HAD2 Y01 sing 719 n n CAD HAD3 Y01 sing 720 n n CAT HAT1 Y01 sing 721 n n CAT HAT2 Y01 sing 722 n n CAR HAR1 Y01 sing 723 n n CAR HAR2 Y01 sing 724 n n CAM HAM1 Y01 sing 725 n n CAM HAM2 Y01 sing 726 n n CAL HAL1 Y01 sing 727 n n CAL HAL2 Y01 sing 728 n n OAH HAH Y01 sing 729 n n # _atom_sites.entry_id 7N72 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALF A 1 1201 1201 ALF ALF . C 3 MG A 1 1202 1202 MG MG . D 4 SPM A 1 1203 1301 SPM SPM . E 5 Y01 A 1 1204 1401 Y01 Y01 . F 5 Y01 A 1 1205 1402 Y01 Y01 . G 6 PC1 A 1 1206 1403 PC1 PC1 . H 7 LMT A 1 1207 1404 LMT LMT . I 7 LMT A 1 1208 1405 LMT LMT . J 7 LMT A 1 1209 1406 LMT LMT . K 6 PC1 A 1 1210 1407 PC1 PC1 . L 5 Y01 A 1 1211 1408 Y01 Y01 . M 8 HOH A 1 1301 1306 HOH HOH . M 8 HOH A 2 1302 1302 HOH HOH . M 8 HOH A 3 1303 1305 HOH HOH . M 8 HOH A 4 1304 1303 HOH HOH . M 8 HOH A 5 1305 1304 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 5 136.32 156.755 139.586 1 50.36 ? CAA Y01 1204 A 1 HETATM 2 C CBA Y01 . . . E 5 137.617 156.104 140.088 1 50.36 ? CBA Y01 1204 A 1 HETATM 3 C CAB Y01 . . . E 5 138.805 156.994 139.669 1 50.36 ? CAB Y01 1204 A 1 HETATM 4 C CAN Y01 . . . E 5 137.599 155.823 141.62 1 50.36 ? CAN Y01 1204 A 1 HETATM 5 C CAJ Y01 . . . E 5 138.254 154.5 142.098 1 50.36 ? CAJ Y01 1204 A 1 HETATM 6 C CAO Y01 . . . E 5 137.78 153.97 143.468 1 50.36 ? CAO Y01 1204 A 1 HETATM 7 C CBB Y01 . . . E 5 138.911 153.746 144.494 1 50.36 ? CBB Y01 1204 A 1 HETATM 8 C CAC Y01 . . . E 5 138.567 154.32 145.878 1 50.36 ? CAC Y01 1204 A 1 HETATM 9 C CBE Y01 . . . E 5 139.229 152.235 144.554 1 50.36 ? CBE Y01 1204 A 1 HETATM 10 C CAP Y01 . . . E 5 139.653 151.57 143.205 1 50.36 ? CAP Y01 1204 A 1 HETATM 11 C CAQ Y01 . . . E 5 140.742 150.573 143.501 1 50.36 ? CAQ Y01 1204 A 1 HETATM 12 C CBG Y01 . . . E 5 140.557 150.434 145 1 50.36 ? CBG Y01 1204 A 1 HETATM 13 C CBI Y01 . . . E 5 140.402 151.876 145.499 1 50.36 ? CBI Y01 1204 A 1 HETATM 14 C CAE Y01 . . . E 5 141.672 152.794 145.344 1 50.36 ? CAE Y01 1204 A 1 HETATM 15 C CAU Y01 . . . E 5 140.078 151.88 147.001 1 50.36 ? CAU Y01 1204 A 1 HETATM 16 C CAS Y01 . . . E 5 141.21 151.197 147.724 1 50.36 ? CAS Y01 1204 A 1 HETATM 17 C CBF Y01 . . . E 5 141.423 149.779 147.201 1 50.36 ? CBF Y01 1204 A 1 HETATM 18 C CBD Y01 . . . E 5 141.721 149.779 145.697 1 50.36 ? CBD Y01 1204 A 1 HETATM 19 C CAK Y01 . . . E 5 141.721 148.336 145.195 1 50.36 ? CAK Y01 1204 A 1 HETATM 20 C CAI Y01 . . . E 5 142.817 147.649 145.898 1 50.36 ? CAI Y01 1204 A 1 HETATM 21 C CAZ Y01 . . . E 5 143.2 147.887 147.169 1 50.36 ? CAZ Y01 1204 A 1 HETATM 22 C CAV Y01 . . . E 5 144.017 146.924 148.048 1 50.36 ? CAV Y01 1204 A 1 HETATM 23 C CBH Y01 . . . E 5 142.589 149.051 147.913 1 50.36 ? CBH Y01 1204 A 1 HETATM 24 C CAD Y01 . . . E 5 143.81 150.007 148.019 1 50.36 ? CAD Y01 1204 A 1 HETATM 25 C CAT Y01 . . . E 5 142.098 148.588 149.294 1 50.36 ? CAT Y01 1204 A 1 HETATM 26 C CAR Y01 . . . E 5 143.049 147.753 150.15 1 50.36 ? CAR Y01 1204 A 1 HETATM 27 C CBC Y01 . . . E 5 143.446 146.461 149.436 1 50.36 ? CBC Y01 1204 A 1 HETATM 28 O OAW Y01 . . . E 5 144.367 145.734 150.285 1 50.36 ? OAW Y01 1204 A 1 HETATM 29 C CAY Y01 . . . E 5 143.926 144.864 151.302 1 50.36 ? CAY Y01 1204 A 1 HETATM 30 O OAG Y01 . . . E 5 142.742 144.605 151.265 1 50.36 ? OAG Y01 1204 A 1 HETATM 31 C CAM Y01 . . . E 5 144.825 144.237 152.427 1 50.36 ? CAM Y01 1204 A 1 HETATM 32 C CAL Y01 . . . E 5 144.712 142.702 152.585 1 50.36 ? CAL Y01 1204 A 1 HETATM 33 C CAX Y01 . . . E 5 146.049 141.927 152.929 1 50.36 ? CAX Y01 1204 A 1 HETATM 34 O OAH Y01 . . . E 5 145.947 140.847 153.547 1 50.36 ? OAH Y01 1204 A 1 HETATM 35 O OAF Y01 . . . E 5 147.122 142.451 152.552 1 50.36 ? OAF Y01 1204 A 1 HETATM 36 H HAA1 Y01 . . . E 5 135.594 156.125 139.464 1 50.36 ? HAA1 Y01 1204 A 1 HETATM 37 H HAA2 Y01 . . . E 5 135.953 157.419 140.191 1 50.36 ? HAA2 Y01 1204 A 1 HETATM 38 H HAA3 Y01 . . . E 5 136.406 157.219 138.74 1 50.36 ? HAA3 Y01 1204 A 1 HETATM 39 H HBA Y01 . . . E 5 137.707 155.264 139.617 1 50.36 ? HBA Y01 1204 A 1 HETATM 40 H HAB1 Y01 . . . E 5 138.684 157.406 138.799 1 50.36 ? HAB1 Y01 1204 A 1 HETATM 41 H HAB2 Y01 . . . E 5 138.994 157.718 140.291 1 50.36 ? HAB2 Y01 1204 A 1 HETATM 42 H HAB3 Y01 . . . E 5 139.644 156.516 139.589 1 50.36 ? HAB3 Y01 1204 A 1 HETATM 43 H HAN1 Y01 . . . E 5 136.683 155.852 141.936 1 50.36 ? HAN1 Y01 1204 A 1 HETATM 44 H HAN2 Y01 . . . E 5 138.02 156.561 142.084 1 50.36 ? HAN2 Y01 1204 A 1 HETATM 45 H HAJ1 Y01 . . . E 5 138.094 153.803 141.443 1 50.36 ? HAJ1 Y01 1204 A 1 HETATM 46 H HAJ2 Y01 . . . E 5 139.218 154.598 142.128 1 50.36 ? HAJ2 Y01 1204 A 1 HETATM 47 H HAO1 Y01 . . . E 5 137.105 154.531 143.878 1 50.36 ? HAO1 Y01 1204 A 1 HETATM 48 H HAO2 Y01 . . . E 5 137.31 153.133 143.339 1 50.36 ? HAO2 Y01 1204 A 1 HETATM 49 H HBB Y01 . . . E 5 139.727 154.164 144.188 1 50.36 ? HBB Y01 1204 A 1 HETATM 50 H HAC1 Y01 . . . E 5 137.956 155.07 145.895 1 50.36 ? HAC1 Y01 1204 A 1 HETATM 51 H HAC2 Y01 . . . E 5 138.137 153.682 146.468 1 50.36 ? HAC2 Y01 1204 A 1 HETATM 52 H HAC3 Y01 . . . E 5 139.342 154.648 146.359 1 50.36 ? HAC3 Y01 1204 A 1 HETATM 53 H HBE Y01 . . . E 5 138.451 151.764 144.888 1 50.36 ? HBE Y01 1204 A 1 HETATM 54 H HAP1 Y01 . . . E 5 138.926 151.097 142.771 1 50.36 ? HAP1 Y01 1204 A 1 HETATM 55 H HAP2 Y01 . . . E 5 139.99 152.236 142.586 1 50.36 ? HAP2 Y01 1204 A 1 HETATM 56 H HAQ1 Y01 . . . E 5 141.639 150.846 143.255 1 50.36 ? HAQ1 Y01 1204 A 1 HETATM 57 H HAQ2 Y01 . . . E 5 140.708 149.718 143.055 1 50.36 ? HAQ2 Y01 1204 A 1 HETATM 58 H HBG Y01 . . . E 5 139.819 149.831 145.17 1 50.36 ? HBG Y01 1204 A 1 HETATM 59 H HBD Y01 . . . E 5 142.513 150.223 145.369 1 50.36 ? HBD Y01 1204 A 1 HETATM 60 H HAE1 Y01 . . . E 5 141.702 153.525 145.979 1 50.36 ? HAE1 Y01 1204 A 1 HETATM 61 H HAE2 Y01 . . . E 5 141.829 153.14 144.451 1 50.36 ? HAE2 Y01 1204 A 1 HETATM 62 H HAE3 Y01 . . . E 5 142.522 152.383 145.559 1 50.36 ? HAE3 Y01 1204 A 1 HETATM 63 H HAU1 Y01 . . . E 5 139.252 151.445 147.255 1 50.36 ? HAU1 Y01 1204 A 1 HETATM 64 H HAU2 Y01 . . . E 5 140.086 152.793 147.297 1 50.36 ? HAU2 Y01 1204 A 1 HETATM 65 H HAS1 Y01 . . . E 5 140.991 151.331 148.659 1 50.36 ? HAS1 Y01 1204 A 1 HETATM 66 H HAS2 Y01 . . . E 5 142 151.725 147.608 1 50.36 ? HAS2 Y01 1204 A 1 HETATM 67 H HBF Y01 . . . E 5 140.558 149.35 147.283 1 50.36 ? HBF Y01 1204 A 1 HETATM 68 H HAK1 Y01 . . . E 5 140.828 147.974 145.294 1 50.36 ? HAK1 Y01 1204 A 1 HETATM 69 H HAK2 Y01 . . . E 5 141.762 148.387 144.245 1 50.36 ? HAK2 Y01 1204 A 1 HETATM 70 H HAI Y01 . . . E 5 143.081 146.936 145.363 1 50.36 ? HAI Y01 1204 A 1 HETATM 71 H HAV1 Y01 . . . E 5 144.228 146.133 147.528 1 50.36 ? HAV1 Y01 1204 A 1 HETATM 72 H HAV2 Y01 . . . E 5 144.849 147.388 148.213 1 50.36 ? HAV2 Y01 1204 A 1 HETATM 73 H HBC Y01 . . . E 5 142.629 145.952 149.29 1 50.36 ? HBC Y01 1204 A 1 HETATM 74 H HAD1 Y01 . . . E 5 144.603 149.487 147.849 1 50.36 ? HAD1 Y01 1204 A 1 HETATM 75 H HAD2 Y01 . . . E 5 143.873 150.681 147.325 1 50.36 ? HAD2 Y01 1204 A 1 HETATM 76 H HAD3 Y01 . . . E 5 143.938 150.412 148.893 1 50.36 ? HAD3 Y01 1204 A 1 HETATM 77 H HAT1 Y01 . . . E 5 141.838 149.36 149.82 1 50.36 ? HAT1 Y01 1204 A 1 HETATM 78 H HAT2 Y01 . . . E 5 141.275 148.091 149.168 1 50.36 ? HAT2 Y01 1204 A 1 HETATM 79 H HAR1 Y01 . . . E 5 142.603 147.509 150.979 1 50.36 ? HAR1 Y01 1204 A 1 HETATM 80 H HAR2 Y01 . . . E 5 143.812 148.275 150.436 1 50.36 ? HAR2 Y01 1204 A 1 HETATM 81 H HAM1 Y01 . . . E 5 145.751 144.424 152.243 1 50.36 ? HAM1 Y01 1204 A 1 HETATM 82 H HAM2 Y01 . . . E 5 144.663 144.63 153.297 1 50.36 ? HAM2 Y01 1204 A 1 HETATM 83 H HAL1 Y01 . . . E 5 144.354 142.283 151.79 1 50.36 ? HAL1 Y01 1204 A 1 HETATM 84 H HAL2 Y01 . . . E 5 144.08 142.466 153.278 1 50.36 ? HAL2 Y01 1204 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 84 #