data_7N72 # _model_server_result.job_id KTIm8S9nhKtYHHUAwW64AQ _model_server_result.datetime_utc '2024-11-21 14:07:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1206}' # _entry.id 7N72 # _exptl.entry_id 7N72 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N72 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 508 A ASP 508 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 A O THR 510 A THR 510 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 A OD1 ASP 873 A ASP 873 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 323 n n P O14 PC1 doub 324 n n P O13 PC1 sing 325 n n P O11 PC1 sing 326 n n O13 C11 PC1 sing 327 n n C11 C12 PC1 sing 328 n n C11 H111 PC1 sing 329 n n C11 H112 PC1 sing 330 n n C12 N PC1 sing 331 n n C12 H121 PC1 sing 332 n n C12 H122 PC1 sing 333 n n N C13 PC1 sing 334 n n N C14 PC1 sing 335 n n N C15 PC1 sing 336 n n C13 H131 PC1 sing 337 n n C13 H132 PC1 sing 338 n n C13 H133 PC1 sing 339 n n C14 H141 PC1 sing 340 n n C14 H142 PC1 sing 341 n n C14 H143 PC1 sing 342 n n C15 H151 PC1 sing 343 n n C15 H152 PC1 sing 344 n n C15 H153 PC1 sing 345 n n O11 C1 PC1 sing 346 n n C1 C2 PC1 sing 347 n n C1 H11 PC1 sing 348 n n C1 H12 PC1 sing 349 n n C2 O21 PC1 sing 350 n n C2 C3 PC1 sing 351 n n C2 H2 PC1 sing 352 n n O21 C21 PC1 sing 353 n n C21 O22 PC1 doub 354 n n C21 C22 PC1 sing 355 n n C22 C23 PC1 sing 356 n n C22 H221 PC1 sing 357 n n C22 H222 PC1 sing 358 n n C23 C24 PC1 sing 359 n n C23 H231 PC1 sing 360 n n C23 H232 PC1 sing 361 n n C24 C25 PC1 sing 362 n n C24 H241 PC1 sing 363 n n C24 H242 PC1 sing 364 n n C25 C26 PC1 sing 365 n n C25 H251 PC1 sing 366 n n C25 H252 PC1 sing 367 n n C26 C27 PC1 sing 368 n n C26 H261 PC1 sing 369 n n C26 H262 PC1 sing 370 n n C27 C28 PC1 sing 371 n n C27 H271 PC1 sing 372 n n C27 H272 PC1 sing 373 n n C28 C29 PC1 sing 374 n n C28 H281 PC1 sing 375 n n C28 H282 PC1 sing 376 n n C29 C2A PC1 sing 377 n n C29 H291 PC1 sing 378 n n C29 H292 PC1 sing 379 n n C2A C2B PC1 sing 380 n n C2A H2A1 PC1 sing 381 n n C2A H2A2 PC1 sing 382 n n C2B C2C PC1 sing 383 n n C2B H2B1 PC1 sing 384 n n C2B H2B2 PC1 sing 385 n n C2C C2D PC1 sing 386 n n C2C H2C1 PC1 sing 387 n n C2C H2C2 PC1 sing 388 n n C2D C2E PC1 sing 389 n n C2D H2D1 PC1 sing 390 n n C2D H2D2 PC1 sing 391 n n C2E C2F PC1 sing 392 n n C2E H2E1 PC1 sing 393 n n C2E H2E2 PC1 sing 394 n n C2F C2G PC1 sing 395 n n C2F H2F1 PC1 sing 396 n n C2F H2F2 PC1 sing 397 n n C2G C2H PC1 sing 398 n n C2G H2G1 PC1 sing 399 n n C2G H2G2 PC1 sing 400 n n C2H C2I PC1 sing 401 n n C2H H2H1 PC1 sing 402 n n C2H H2H2 PC1 sing 403 n n C2I H2I1 PC1 sing 404 n n C2I H2I2 PC1 sing 405 n n C2I H2I3 PC1 sing 406 n n C3 O31 PC1 sing 407 n n C3 H31 PC1 sing 408 n n C3 H32 PC1 sing 409 n n O31 C31 PC1 sing 410 n n C31 O32 PC1 doub 411 n n C31 C32 PC1 sing 412 n n C32 C33 PC1 sing 413 n n C32 H321 PC1 sing 414 n n C32 H322 PC1 sing 415 n n C33 C34 PC1 sing 416 n n C33 H331 PC1 sing 417 n n C33 H332 PC1 sing 418 n n C34 C35 PC1 sing 419 n n C34 H341 PC1 sing 420 n n C34 H342 PC1 sing 421 n n C35 C36 PC1 sing 422 n n C35 H351 PC1 sing 423 n n C35 H352 PC1 sing 424 n n C36 C37 PC1 sing 425 n n C36 H361 PC1 sing 426 n n C36 H362 PC1 sing 427 n n C37 C38 PC1 sing 428 n n C37 H371 PC1 sing 429 n n C37 H372 PC1 sing 430 n n C38 C39 PC1 sing 431 n n C38 H381 PC1 sing 432 n n C38 H382 PC1 sing 433 n n C39 C3A PC1 sing 434 n n C39 H391 PC1 sing 435 n n C39 H392 PC1 sing 436 n n C3A C3B PC1 sing 437 n n C3A H3A1 PC1 sing 438 n n C3A H3A2 PC1 sing 439 n n C3B C3C PC1 sing 440 n n C3B H3B1 PC1 sing 441 n n C3B H3B2 PC1 sing 442 n n C3C C3D PC1 sing 443 n n C3C H3C1 PC1 sing 444 n n C3C H3C2 PC1 sing 445 n n C3D C3E PC1 sing 446 n n C3D H3D1 PC1 sing 447 n n C3D H3D2 PC1 sing 448 n n C3E C3F PC1 sing 449 n n C3E H3E1 PC1 sing 450 n n C3E H3E2 PC1 sing 451 n n C3F C3G PC1 sing 452 n n C3F H3F1 PC1 sing 453 n n C3F H3F2 PC1 sing 454 n n C3G C3H PC1 sing 455 n n C3G H3G1 PC1 sing 456 n n C3G H3G2 PC1 sing 457 n n C3H C3I PC1 sing 458 n n C3H H3H1 PC1 sing 459 n n C3H H3H2 PC1 sing 460 n n C3I H3I1 PC1 sing 461 n n C3I H3I2 PC1 sing 462 n n C3I H3I3 PC1 sing 463 n n # _atom_sites.entry_id 7N72 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALF A 1 1201 1201 ALF ALF . C 3 MG A 1 1202 1202 MG MG . D 4 SPM A 1 1203 1301 SPM SPM . E 5 Y01 A 1 1204 1401 Y01 Y01 . F 5 Y01 A 1 1205 1402 Y01 Y01 . G 6 PC1 A 1 1206 1403 PC1 PC1 . H 7 LMT A 1 1207 1404 LMT LMT . I 7 LMT A 1 1208 1405 LMT LMT . J 7 LMT A 1 1209 1406 LMT LMT . K 6 PC1 A 1 1210 1407 PC1 PC1 . L 5 Y01 A 1 1211 1408 Y01 Y01 . M 8 HOH A 1 1301 1306 HOH HOH . M 8 HOH A 2 1302 1302 HOH HOH . M 8 HOH A 3 1303 1305 HOH HOH . M 8 HOH A 4 1304 1303 HOH HOH . M 8 HOH A 5 1305 1304 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . G 6 151.776 158.423 162.36 1 54.57 ? O12 PC1 1206 A 1 HETATM 2 P P PC1 . . . G 6 151.055 157.294 163.06 1 54.57 ? P PC1 1206 A 1 HETATM 3 O O14 PC1 . . . G 6 149.987 157.599 164.08 1 54.57 ? O14 PC1 1206 A 1 HETATM 4 O O13 PC1 . . . G 6 152.156 156.354 163.764 1 54.57 ? O13 PC1 1206 A 1 HETATM 5 O O11 PC1 . . . G 6 150.428 156.341 161.925 1 54.57 ? O11 PC1 1206 A 1 HETATM 6 C C1 PC1 . . . G 6 149.339 155.457 162.185 1 54.57 ? C1 PC1 1206 A 1 HETATM 7 C C2 PC1 . . . G 6 148.648 155.178 160.858 1 54.57 ? C2 PC1 1206 A 1 HETATM 8 O O21 PC1 . . . G 6 148.753 156.37 160.08 1 54.57 ? O21 PC1 1206 A 1 HETATM 9 C C21 PC1 . . . G 6 147.93 156.348 158.884 1 54.57 ? C21 PC1 1206 A 1 HETATM 10 O O22 PC1 . . . G 6 146.745 156.623 158.975 1 54.57 ? O22 PC1 1206 A 1 HETATM 11 C C22 PC1 . . . G 6 148.544 156.015 157.549 1 54.57 ? C22 PC1 1206 A 1 HETATM 12 C C23 PC1 . . . G 6 147.446 155.693 156.543 1 54.57 ? C23 PC1 1206 A 1 HETATM 13 C C24 PC1 . . . G 6 147.973 154.729 155.492 1 54.57 ? C24 PC1 1206 A 1 HETATM 14 C C25 PC1 . . . G 6 147.132 154.766 154.22 1 54.57 ? C25 PC1 1206 A 1 HETATM 15 C C26 PC1 . . . G 6 147.861 155.477 153.089 1 54.57 ? C26 PC1 1206 A 1 HETATM 16 C C27 PC1 . . . G 6 147.455 154.953 151.721 1 54.57 ? C27 PC1 1206 A 1 HETATM 17 C C28 PC1 . . . G 6 148.143 155.774 150.638 1 54.57 ? C28 PC1 1206 A 1 HETATM 18 C C29 PC1 . . . G 6 148.829 154.889 149.607 1 54.57 ? C29 PC1 1206 A 1 HETATM 19 C C2A PC1 . . . G 6 149.498 155.735 148.53 1 54.57 ? C2A PC1 1206 A 1 HETATM 20 C C3 PC1 . . . G 6 147.193 154.796 161.104 1 54.57 ? C3 PC1 1206 A 1 HETATM 21 O O31 PC1 . . . G 6 146.615 154.165 159.958 1 54.57 ? O31 PC1 1206 A 1 HETATM 22 C C31 PC1 . . . G 6 145.214 153.767 159.965 1 54.57 ? C31 PC1 1206 A 1 HETATM 23 O O32 PC1 . . . G 6 144.884 152.72 160.496 1 54.57 ? O32 PC1 1206 A 1 HETATM 24 C C32 PC1 . . . G 6 144.179 154.679 159.346 1 54.57 ? C32 PC1 1206 A 1 HETATM 25 C C33 PC1 . . . G 6 143.321 153.94 158.327 1 54.57 ? C33 PC1 1206 A 1 HETATM 26 C C34 PC1 . . . G 6 142.641 154.942 157.4 1 54.57 ? C34 PC1 1206 A 1 HETATM 27 C C35 PC1 . . . G 6 141.873 154.237 156.29 1 54.57 ? C35 PC1 1206 A 1 HETATM 28 C C36 PC1 . . . G 6 140.693 155.075 155.811 1 54.57 ? C36 PC1 1206 A 1 HETATM 29 C C37 PC1 . . . G 6 141.131 156.451 155.323 1 54.57 ? C37 PC1 1206 A 1 HETATM 30 C C38 PC1 . . . G 6 140.479 156.788 153.987 1 54.57 ? C38 PC1 1206 A 1 HETATM 31 H H11 PC1 . . . G 6 149.703 154.528 162.627 1 54.57 ? H11 PC1 1206 A 1 HETATM 32 H H12 PC1 . . . G 6 148.635 155.915 162.882 1 54.57 ? H12 PC1 1206 A 1 HETATM 33 H H2 PC1 . . . G 6 149.159 154.347 160.352 1 54.57 ? H2 PC1 1206 A 1 HETATM 34 H H221 PC1 . . . G 6 149.215 155.16 157.656 1 54.57 ? H221 PC1 1206 A 1 HETATM 35 H H222 PC1 . . . G 6 149.129 156.865 157.193 1 54.57 ? H222 PC1 1206 A 1 HETATM 36 H H231 PC1 . . . G 6 147.105 156.613 156.063 1 54.57 ? H231 PC1 1206 A 1 HETATM 37 H H232 PC1 . . . G 6 146.596 155.239 157.056 1 54.57 ? H232 PC1 1206 A 1 HETATM 38 H H241 PC1 . . . G 6 147.956 153.715 155.901 1 54.57 ? H241 PC1 1206 A 1 HETATM 39 H H242 PC1 . . . G 6 149.012 154.981 155.27 1 54.57 ? H242 PC1 1206 A 1 HETATM 40 H H251 PC1 . . . G 6 146.188 155.277 154.422 1 54.57 ? H251 PC1 1206 A 1 HETATM 41 H H252 PC1 . . . G 6 146.903 153.748 153.91 1 54.57 ? H252 PC1 1206 A 1 HETATM 42 H H261 PC1 . . . G 6 148.937 155.338 153.202 1 54.57 ? H261 PC1 1206 A 1 HETATM 43 H H262 PC1 . . . G 6 147.643 156.545 153.142 1 54.57 ? H262 PC1 1206 A 1 HETATM 44 H H271 PC1 . . . G 6 146.372 155.03 151.609 1 54.57 ? H271 PC1 1206 A 1 HETATM 45 H H272 PC1 . . . G 6 147.735 153.901 151.628 1 54.57 ? H272 PC1 1206 A 1 HETATM 46 H H281 PC1 . . . G 6 148.887 156.427 151.099 1 54.57 ? H281 PC1 1206 A 1 HETATM 47 H H282 PC1 . . . G 6 147.404 156.407 150.141 1 54.57 ? H282 PC1 1206 A 1 HETATM 48 H H291 PC1 . . . G 6 148.09 154.239 149.138 1 54.57 ? H291 PC1 1206 A 1 HETATM 49 H H292 PC1 . . . G 6 149.569 154.255 150.101 1 54.57 ? H292 PC1 1206 A 1 HETATM 50 H H2A1 PC1 . . . G 6 150.141 155.099 147.922 1 54.57 ? H2A1 PC1 1206 A 1 HETATM 51 H H2A2 PC1 . . . G 6 150.146 156.473 148.999 1 54.57 ? H2A2 PC1 1206 A 1 HETATM 52 H H31 PC1 . . . G 6 147.121 154.14 161.973 1 54.57 ? H31 PC1 1206 A 1 HETATM 53 H H32 PC1 . . . G 6 146.635 155.704 161.322 1 54.57 ? H32 PC1 1206 A 1 HETATM 54 H H321 PC1 . . . G 6 143.539 155.09 160.13 1 54.57 ? H321 PC1 1206 A 1 HETATM 55 H H322 PC1 . . . G 6 144.679 155.514 158.853 1 54.57 ? H322 PC1 1206 A 1 HETATM 56 H H331 PC1 . . . G 6 142.562 153.354 158.849 1 54.57 ? H331 PC1 1206 A 1 HETATM 57 H H332 PC1 . . . G 6 143.938 153.253 157.745 1 54.57 ? H332 PC1 1206 A 1 HETATM 58 H H341 PC1 . . . G 6 141.956 155.567 157.977 1 54.57 ? H341 PC1 1206 A 1 HETATM 59 H H342 PC1 . . . G 6 143.397 155.594 156.96 1 54.57 ? H342 PC1 1206 A 1 HETATM 60 H H351 PC1 . . . G 6 141.513 153.274 156.655 1 54.57 ? H351 PC1 1206 A 1 HETATM 61 H H352 PC1 . . . G 6 142.547 154.046 155.452 1 54.57 ? H352 PC1 1206 A 1 HETATM 62 H H361 PC1 . . . G 6 139.984 155.197 156.632 1 54.57 ? H361 PC1 1206 A 1 HETATM 63 H H362 PC1 . . . G 6 140.181 154.548 155.003 1 54.57 ? H362 PC1 1206 A 1 HETATM 64 H H371 PC1 . . . G 6 142.214 156.473 155.204 1 54.57 ? H371 PC1 1206 A 1 HETATM 65 H H372 PC1 . . . G 6 140.863 157.202 156.07 1 54.57 ? H372 PC1 1206 A 1 HETATM 66 H H381 PC1 . . . G 6 140.502 157.867 153.836 1 54.57 ? H381 PC1 1206 A 1 HETATM 67 H H382 PC1 . . . G 6 139.43 156.497 154.012 1 54.57 ? H382 PC1 1206 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 67 #