data_7N72
#
_model_server_result.job_id            B_VR3gX7HSnRfRN1bbyioA 
_model_server_result.datetime_utc      '2024-11-21 14:26:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n72 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1210}' 
#
_entry.id    7N72 
#
_exptl.entry_id    7N72 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7N72 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N72 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 508 A ASP 508 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc2 A O THR 510 A THR 510 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc3 A OD1 ASP 873 A ASP 873 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 323 n n 
P O14 PC1 doub 324 n n 
P O13 PC1 sing 325 n n 
P O11 PC1 sing 326 n n 
O13 C11 PC1 sing 327 n n 
C11 C12 PC1 sing 328 n n 
C11 H111 PC1 sing 329 n n 
C11 H112 PC1 sing 330 n n 
C12 N PC1 sing 331 n n 
C12 H121 PC1 sing 332 n n 
C12 H122 PC1 sing 333 n n 
N C13 PC1 sing 334 n n 
N C14 PC1 sing 335 n n 
N C15 PC1 sing 336 n n 
C13 H131 PC1 sing 337 n n 
C13 H132 PC1 sing 338 n n 
C13 H133 PC1 sing 339 n n 
C14 H141 PC1 sing 340 n n 
C14 H142 PC1 sing 341 n n 
C14 H143 PC1 sing 342 n n 
C15 H151 PC1 sing 343 n n 
C15 H152 PC1 sing 344 n n 
C15 H153 PC1 sing 345 n n 
O11 C1 PC1 sing 346 n n 
C1 C2 PC1 sing 347 n n 
C1 H11 PC1 sing 348 n n 
C1 H12 PC1 sing 349 n n 
C2 O21 PC1 sing 350 n n 
C2 C3 PC1 sing 351 n n 
C2 H2 PC1 sing 352 n n 
O21 C21 PC1 sing 353 n n 
C21 O22 PC1 doub 354 n n 
C21 C22 PC1 sing 355 n n 
C22 C23 PC1 sing 356 n n 
C22 H221 PC1 sing 357 n n 
C22 H222 PC1 sing 358 n n 
C23 C24 PC1 sing 359 n n 
C23 H231 PC1 sing 360 n n 
C23 H232 PC1 sing 361 n n 
C24 C25 PC1 sing 362 n n 
C24 H241 PC1 sing 363 n n 
C24 H242 PC1 sing 364 n n 
C25 C26 PC1 sing 365 n n 
C25 H251 PC1 sing 366 n n 
C25 H252 PC1 sing 367 n n 
C26 C27 PC1 sing 368 n n 
C26 H261 PC1 sing 369 n n 
C26 H262 PC1 sing 370 n n 
C27 C28 PC1 sing 371 n n 
C27 H271 PC1 sing 372 n n 
C27 H272 PC1 sing 373 n n 
C28 C29 PC1 sing 374 n n 
C28 H281 PC1 sing 375 n n 
C28 H282 PC1 sing 376 n n 
C29 C2A PC1 sing 377 n n 
C29 H291 PC1 sing 378 n n 
C29 H292 PC1 sing 379 n n 
C2A C2B PC1 sing 380 n n 
C2A H2A1 PC1 sing 381 n n 
C2A H2A2 PC1 sing 382 n n 
C2B C2C PC1 sing 383 n n 
C2B H2B1 PC1 sing 384 n n 
C2B H2B2 PC1 sing 385 n n 
C2C C2D PC1 sing 386 n n 
C2C H2C1 PC1 sing 387 n n 
C2C H2C2 PC1 sing 388 n n 
C2D C2E PC1 sing 389 n n 
C2D H2D1 PC1 sing 390 n n 
C2D H2D2 PC1 sing 391 n n 
C2E C2F PC1 sing 392 n n 
C2E H2E1 PC1 sing 393 n n 
C2E H2E2 PC1 sing 394 n n 
C2F C2G PC1 sing 395 n n 
C2F H2F1 PC1 sing 396 n n 
C2F H2F2 PC1 sing 397 n n 
C2G C2H PC1 sing 398 n n 
C2G H2G1 PC1 sing 399 n n 
C2G H2G2 PC1 sing 400 n n 
C2H C2I PC1 sing 401 n n 
C2H H2H1 PC1 sing 402 n n 
C2H H2H2 PC1 sing 403 n n 
C2I H2I1 PC1 sing 404 n n 
C2I H2I2 PC1 sing 405 n n 
C2I H2I3 PC1 sing 406 n n 
C3 O31 PC1 sing 407 n n 
C3 H31 PC1 sing 408 n n 
C3 H32 PC1 sing 409 n n 
O31 C31 PC1 sing 410 n n 
C31 O32 PC1 doub 411 n n 
C31 C32 PC1 sing 412 n n 
C32 C33 PC1 sing 413 n n 
C32 H321 PC1 sing 414 n n 
C32 H322 PC1 sing 415 n n 
C33 C34 PC1 sing 416 n n 
C33 H331 PC1 sing 417 n n 
C33 H332 PC1 sing 418 n n 
C34 C35 PC1 sing 419 n n 
C34 H341 PC1 sing 420 n n 
C34 H342 PC1 sing 421 n n 
C35 C36 PC1 sing 422 n n 
C35 H351 PC1 sing 423 n n 
C35 H352 PC1 sing 424 n n 
C36 C37 PC1 sing 425 n n 
C36 H361 PC1 sing 426 n n 
C36 H362 PC1 sing 427 n n 
C37 C38 PC1 sing 428 n n 
C37 H371 PC1 sing 429 n n 
C37 H372 PC1 sing 430 n n 
C38 C39 PC1 sing 431 n n 
C38 H381 PC1 sing 432 n n 
C38 H382 PC1 sing 433 n n 
C39 C3A PC1 sing 434 n n 
C39 H391 PC1 sing 435 n n 
C39 H392 PC1 sing 436 n n 
C3A C3B PC1 sing 437 n n 
C3A H3A1 PC1 sing 438 n n 
C3A H3A2 PC1 sing 439 n n 
C3B C3C PC1 sing 440 n n 
C3B H3B1 PC1 sing 441 n n 
C3B H3B2 PC1 sing 442 n n 
C3C C3D PC1 sing 443 n n 
C3C H3C1 PC1 sing 444 n n 
C3C H3C2 PC1 sing 445 n n 
C3D C3E PC1 sing 446 n n 
C3D H3D1 PC1 sing 447 n n 
C3D H3D2 PC1 sing 448 n n 
C3E C3F PC1 sing 449 n n 
C3E H3E1 PC1 sing 450 n n 
C3E H3E2 PC1 sing 451 n n 
C3F C3G PC1 sing 452 n n 
C3F H3F1 PC1 sing 453 n n 
C3F H3F2 PC1 sing 454 n n 
C3G C3H PC1 sing 455 n n 
C3G H3G1 PC1 sing 456 n n 
C3G H3G2 PC1 sing 457 n n 
C3H C3I PC1 sing 458 n n 
C3H H3H1 PC1 sing 459 n n 
C3H H3H2 PC1 sing 460 n n 
C3I H3I1 PC1 sing 461 n n 
C3I H3I2 PC1 sing 462 n n 
C3I H3I3 PC1 sing 463 n n 
#
_atom_sites.entry_id                     7N72 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ALF A 1 1201 1201 ALF ALF . 
C 3 MG A 1 1202 1202 MG MG . 
D 4 SPM A 1 1203 1301 SPM SPM . 
E 5 Y01 A 1 1204 1401 Y01 Y01 . 
F 5 Y01 A 1 1205 1402 Y01 Y01 . 
G 6 PC1 A 1 1206 1403 PC1 PC1 . 
H 7 LMT A 1 1207 1404 LMT LMT . 
I 7 LMT A 1 1208 1405 LMT LMT . 
J 7 LMT A 1 1209 1406 LMT LMT . 
K 6 PC1 A 1 1210 1407 PC1 PC1 . 
L 5 Y01 A 1 1211 1408 Y01 Y01 . 
M 8 HOH A 1 1301 1306 HOH HOH . 
M 8 HOH A 2 1302 1302 HOH HOH . 
M 8 HOH A 3 1303 1305 HOH HOH . 
M 8 HOH A 4 1304 1303 HOH HOH . 
M 8 HOH A 5 1305 1304 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 PC1 . . . K 6 144.643 140.033 117.43 1 51.07 ? O21 PC1 1210 A 1 
HETATM 2 C C21 PC1 . . . K 6 145.133 141.389 117.62 1 51.07 ? C21 PC1 1210 A 1 
HETATM 3 O O22 PC1 . . . K 6 145.89 141.873 116.793 1 51.07 ? O22 PC1 1210 A 1 
HETATM 4 C C22 PC1 . . . K 6 144.695 142.187 118.826 1 51.07 ? C22 PC1 1210 A 1 
HETATM 5 C C23 PC1 . . . K 6 144.865 141.366 120.1 1 51.07 ? C23 PC1 1210 A 1 
HETATM 6 C C24 PC1 . . . K 6 146.319 141.326 120.558 1 51.07 ? C24 PC1 1210 A 1 
HETATM 7 C C25 PC1 . . . K 6 146.414 141.146 122.069 1 51.07 ? C25 PC1 1210 A 1 
HETATM 8 C C26 PC1 . . . K 6 147.863 141.254 122.533 1 51.07 ? C26 PC1 1210 A 1 
HETATM 9 C C27 PC1 . . . K 6 147.971 141.342 124.051 1 51.07 ? C27 PC1 1210 A 1 
HETATM 10 C C28 PC1 . . . K 6 149.065 142.328 124.446 1 51.07 ? C28 PC1 1210 A 1 
HETATM 11 C C29 PC1 . . . K 6 149.579 142.075 125.859 1 51.07 ? C29 PC1 1210 A 1 
HETATM 12 C C2A PC1 . . . K 6 150.309 143.298 126.401 1 51.07 ? C2A PC1 1210 A 1 
HETATM 13 C C2B PC1 . . . K 6 151.211 142.911 127.568 1 51.07 ? C2B PC1 1210 A 1 
HETATM 14 C C2C PC1 . . . K 6 151.627 144.121 128.398 1 51.07 ? C2C PC1 1210 A 1 
HETATM 15 C C2D PC1 . . . K 6 151.714 143.739 129.872 1 51.07 ? C2D PC1 1210 A 1 
HETATM 16 C C2E PC1 . . . K 6 152.285 144.866 130.724 1 51.07 ? C2E PC1 1210 A 1 
HETATM 17 C C2F PC1 . . . K 6 152.757 144.331 132.073 1 51.07 ? C2F PC1 1210 A 1 
HETATM 18 C C2G PC1 . . . K 6 153.013 145.464 133.066 1 51.07 ? C2G PC1 1210 A 1 
HETATM 19 C C2H PC1 . . . K 6 152.487 145.151 134.467 1 51.07 ? C2H PC1 1210 A 1 
HETATM 20 C C2I PC1 . . . K 6 153.585 144.812 135.45 1 51.07 ? C2I PC1 1210 A 1 
HETATM 21 H H221 PC1 . . . K 6 143.65 142.48 118.716 1 51.07 ? H221 PC1 1210 A 1 
HETATM 22 H H222 PC1 . . . K 6 145.286 143.102 118.897 1 51.07 ? H222 PC1 1210 A 1 
HETATM 23 H H231 PC1 . . . K 6 144.517 140.348 119.916 1 51.07 ? H231 PC1 1210 A 1 
HETATM 24 H H232 PC1 . . . K 6 144.246 141.79 120.893 1 51.07 ? H232 PC1 1210 A 1 
HETATM 25 H H241 PC1 . . . K 6 146.822 142.251 120.269 1 51.07 ? H241 PC1 1210 A 1 
HETATM 26 H H242 PC1 . . . K 6 146.829 140.497 120.062 1 51.07 ? H242 PC1 1210 A 1 
HETATM 27 H H251 PC1 . . . K 6 146.013 140.17 122.348 1 51.07 ? H251 PC1 1210 A 1 
HETATM 28 H H252 PC1 . . . K 6 145.813 141.91 122.566 1 51.07 ? H252 PC1 1210 A 1 
HETATM 29 H H261 PC1 . . . K 6 148.321 142.139 122.086 1 51.07 ? H261 PC1 1210 A 1 
HETATM 30 H H262 PC1 . . . K 6 148.417 140.379 122.186 1 51.07 ? H262 PC1 1210 A 1 
HETATM 31 H H271 PC1 . . . K 6 148.202 140.356 124.461 1 51.07 ? H271 PC1 1210 A 1 
HETATM 32 H H272 PC1 . . . K 6 147.017 141.667 124.471 1 51.07 ? H272 PC1 1210 A 1 
HETATM 33 H H281 PC1 . . . K 6 148.67 143.345 124.386 1 51.07 ? H281 PC1 1210 A 1 
HETATM 34 H H282 PC1 . . . K 6 149.897 142.249 123.743 1 51.07 ? H282 PC1 1210 A 1 
HETATM 35 H H291 PC1 . . . K 6 150.259 141.22 125.852 1 51.07 ? H291 PC1 1210 A 1 
HETATM 36 H H292 PC1 . . . K 6 148.739 141.832 126.514 1 51.07 ? H292 PC1 1210 A 1 
HETATM 37 H H2A1 PC1 . . . K 6 149.577 144.037 126.733 1 51.07 ? H2A1 PC1 1210 A 1 
HETATM 38 H H2A2 PC1 . . . K 6 150.908 143.751 125.608 1 51.07 ? H2A2 PC1 1210 A 1 
HETATM 39 H H2B1 PC1 . . . K 6 152.106 142.419 127.178 1 51.07 ? H2B1 PC1 1210 A 1 
HETATM 40 H H2B2 PC1 . . . K 6 150.688 142.197 128.208 1 51.07 ? H2B2 PC1 1210 A 1 
HETATM 41 H H2C1 PC1 . . . K 6 150.904 144.928 128.269 1 51.07 ? H2C1 PC1 1210 A 1 
HETATM 42 H H2C2 PC1 . . . K 6 152.598 144.482 128.055 1 51.07 ? H2C2 PC1 1210 A 1 
HETATM 43 H H2D1 PC1 . . . K 6 152.338 142.849 129.981 1 51.07 ? H2D1 PC1 1210 A 1 
HETATM 44 H H2D2 PC1 . . . K 6 150.715 143.489 130.233 1 51.07 ? H2D2 PC1 1210 A 1 
HETATM 45 H H2E1 PC1 . . . K 6 151.514 145.623 130.88 1 51.07 ? H2E1 PC1 1210 A 1 
HETATM 46 H H2E2 PC1 . . . K 6 153.121 145.336 130.2 1 51.07 ? H2E2 PC1 1210 A 1 
HETATM 47 H H2F1 PC1 . . . K 6 153.679 143.766 131.929 1 51.07 ? H2F1 PC1 1210 A 1 
HETATM 48 H H2F2 PC1 . . . K 6 152.004 143.644 132.463 1 51.07 ? H2F2 PC1 1210 A 1 
HETATM 49 H H2G1 PC1 . . . K 6 152.534 146.374 132.702 1 51.07 ? H2G1 PC1 1210 A 1 
HETATM 50 H H2G2 PC1 . . . K 6 154.084 145.661 133.114 1 51.07 ? H2G2 PC1 1210 A 1 
HETATM 51 H H2H1 PC1 . . . K 6 151.802 144.303 134.424 1 51.07 ? H2H1 PC1 1210 A 1 
HETATM 52 H H2H2 PC1 . . . K 6 151.927 146.012 134.84 1 51.07 ? H2H2 PC1 1210 A 1 
HETATM 53 H H2I1 PC1 . . . K 6 153.22 144.935 136.436 1 51.07 ? H2I1 PC1 1210 A 1 
HETATM 54 H H2I2 PC1 . . . K 6 154.421 145.443 135.294 1 51.07 ? H2I2 PC1 1210 A 1 
HETATM 55 H H2I3 PC1 . . . K 6 153.868 143.803 135.315 1 51.07 ? H2I3 PC1 1210 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           55 
#