data_7N72 # _model_server_result.job_id '_muCmluzgW7HPhKATU3r1A' _model_server_result.datetime_utc '2024-11-21 14:23:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1211}' # _entry.id 7N72 # _exptl.entry_id 7N72 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N72 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 508 A ASP 508 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 A O THR 510 A THR 510 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 A OD1 ASP 873 A ASP 873 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 642 n n CBA CAB Y01 sing 643 n n CBA CAN Y01 sing 644 n n CAN CAJ Y01 sing 645 n n CAJ CAO Y01 sing 646 n n CAO CBB Y01 sing 647 n n CBB CAC Y01 sing 648 n n CBB CBE Y01 sing 649 n n CBE CAP Y01 sing 650 n n CBE CBI Y01 sing 651 n n CAP CAQ Y01 sing 652 n n CAQ CBG Y01 sing 653 n n CBG CBI Y01 sing 654 n n CBG CBD Y01 sing 655 n n CBI CAE Y01 sing 656 n n CBI CAU Y01 sing 657 n n CAU CAS Y01 sing 658 n n CAS CBF Y01 sing 659 n n CBF CBD Y01 sing 660 n n CBF CBH Y01 sing 661 n n CBD CAK Y01 sing 662 n n CAK CAI Y01 sing 663 n n CAI CAZ Y01 doub 664 n n CAZ CAV Y01 sing 665 n n CAZ CBH Y01 sing 666 n n CAV CBC Y01 sing 667 n n CBH CAD Y01 sing 668 n n CBH CAT Y01 sing 669 n n CAT CAR Y01 sing 670 n n CAR CBC Y01 sing 671 n n CBC OAW Y01 sing 672 n n OAW CAY Y01 sing 673 n n CAY OAG Y01 doub 674 n n CAY CAM Y01 sing 675 n n CAM CAL Y01 sing 676 n n CAL CAX Y01 sing 677 n n CAX OAH Y01 sing 678 n n CAX OAF Y01 doub 679 n n CAA HAA1 Y01 sing 680 n n CAA HAA2 Y01 sing 681 n n CAA HAA3 Y01 sing 682 n n CBA HBA Y01 sing 683 n n CAB HAB1 Y01 sing 684 n n CAB HAB2 Y01 sing 685 n n CAB HAB3 Y01 sing 686 n n CAN HAN1 Y01 sing 687 n n CAN HAN2 Y01 sing 688 n n CAJ HAJ1 Y01 sing 689 n n CAJ HAJ2 Y01 sing 690 n n CAO HAO1 Y01 sing 691 n n CAO HAO2 Y01 sing 692 n n CBB HBB Y01 sing 693 n n CAC HAC1 Y01 sing 694 n n CAC HAC2 Y01 sing 695 n n CAC HAC3 Y01 sing 696 n n CBE HBE Y01 sing 697 n n CAP HAP1 Y01 sing 698 n n CAP HAP2 Y01 sing 699 n n CAQ HAQ1 Y01 sing 700 n n CAQ HAQ2 Y01 sing 701 n n CBG HBG Y01 sing 702 n n CBD HBD Y01 sing 703 n n CAE HAE1 Y01 sing 704 n n CAE HAE2 Y01 sing 705 n n CAE HAE3 Y01 sing 706 n n CAU HAU1 Y01 sing 707 n n CAU HAU2 Y01 sing 708 n n CAS HAS1 Y01 sing 709 n n CAS HAS2 Y01 sing 710 n n CBF HBF Y01 sing 711 n n CAK HAK1 Y01 sing 712 n n CAK HAK2 Y01 sing 713 n n CAI HAI Y01 sing 714 n n CAV HAV1 Y01 sing 715 n n CAV HAV2 Y01 sing 716 n n CBC HBC Y01 sing 717 n n CAD HAD1 Y01 sing 718 n n CAD HAD2 Y01 sing 719 n n CAD HAD3 Y01 sing 720 n n CAT HAT1 Y01 sing 721 n n CAT HAT2 Y01 sing 722 n n CAR HAR1 Y01 sing 723 n n CAR HAR2 Y01 sing 724 n n CAM HAM1 Y01 sing 725 n n CAM HAM2 Y01 sing 726 n n CAL HAL1 Y01 sing 727 n n CAL HAL2 Y01 sing 728 n n OAH HAH Y01 sing 729 n n # _atom_sites.entry_id 7N72 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALF A 1 1201 1201 ALF ALF . C 3 MG A 1 1202 1202 MG MG . D 4 SPM A 1 1203 1301 SPM SPM . E 5 Y01 A 1 1204 1401 Y01 Y01 . F 5 Y01 A 1 1205 1402 Y01 Y01 . G 6 PC1 A 1 1206 1403 PC1 PC1 . H 7 LMT A 1 1207 1404 LMT LMT . I 7 LMT A 1 1208 1405 LMT LMT . J 7 LMT A 1 1209 1406 LMT LMT . K 6 PC1 A 1 1210 1407 PC1 PC1 . L 5 Y01 A 1 1211 1408 Y01 Y01 . M 8 HOH A 1 1301 1306 HOH HOH . M 8 HOH A 2 1302 1302 HOH HOH . M 8 HOH A 3 1303 1305 HOH HOH . M 8 HOH A 4 1304 1303 HOH HOH . M 8 HOH A 5 1305 1304 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . L 5 146.943 141.621 129.488 1 52.04 ? CAA Y01 1211 A 1 HETATM 2 C CBA Y01 . . . L 5 147.271 141.223 130.937 1 52.04 ? CBA Y01 1211 A 1 HETATM 3 C CAB Y01 . . . L 5 146.831 139.764 131.14 1 52.04 ? CAB Y01 1211 A 1 HETATM 4 C CAN Y01 . . . L 5 148.773 141.449 131.306 1 52.04 ? CAN Y01 1211 A 1 HETATM 5 C CAJ Y01 . . . L 5 149.408 140.437 132.293 1 52.04 ? CAJ Y01 1211 A 1 HETATM 6 C CAO Y01 . . . L 5 150.791 140.809 132.86 1 52.04 ? CAO Y01 1211 A 1 HETATM 7 C CBB Y01 . . . L 5 151.481 139.651 133.623 1 52.04 ? CBB Y01 1211 A 1 HETATM 8 C CAC Y01 . . . L 5 152.075 138.605 132.659 1 52.04 ? CAC Y01 1211 A 1 HETATM 9 C CBE Y01 . . . L 5 152.552 140.225 134.583 1 52.04 ? CBE Y01 1211 A 1 HETATM 10 C CAP Y01 . . . L 5 152.061 141.286 135.617 1 52.04 ? CAP Y01 1211 A 1 HETATM 11 C CAQ Y01 . . . L 5 152.903 141.158 136.859 1 52.04 ? CAQ Y01 1211 A 1 HETATM 12 C CBG Y01 . . . L 5 153.95 140.168 136.382 1 52.04 ? CBG Y01 1211 A 1 HETATM 13 C CBI Y01 . . . L 5 153.215 139.161 135.491 1 52.04 ? CBI Y01 1211 A 1 HETATM 14 C CAE Y01 . . . L 5 152.207 138.194 136.216 1 52.04 ? CAE Y01 1211 A 1 HETATM 15 C CAU Y01 . . . L 5 154.246 138.242 134.82 1 52.04 ? CAU Y01 1211 A 1 HETATM 16 C CAS Y01 . . . L 5 155.02 137.519 135.907 1 52.04 ? CAS Y01 1211 A 1 HETATM 17 C CBF Y01 . . . L 5 155.645 138.484 136.926 1 52.04 ? CBF Y01 1211 A 1 HETATM 18 C CBD Y01 . . . L 5 154.603 139.438 137.524 1 52.04 ? CBD Y01 1211 A 1 HETATM 19 C CAK Y01 . . . L 5 155.287 140.55 138.328 1 52.04 ? CAK Y01 1211 A 1 HETATM 20 C CAI Y01 . . . L 5 156.341 139.945 139.164 1 52.04 ? CAI Y01 1211 A 1 HETATM 21 C CAZ Y01 . . . L 5 156.576 138.617 139.303 1 52.04 ? CAZ Y01 1211 A 1 HETATM 22 C CAV Y01 . . . L 5 157.562 138.008 140.31 1 52.04 ? CAV Y01 1211 A 1 HETATM 23 C CBH Y01 . . . L 5 156.292 137.746 138.115 1 52.04 ? CBH Y01 1211 A 1 HETATM 24 C CAD Y01 . . . L 5 155.272 136.734 138.715 1 52.04 ? CAD Y01 1211 A 1 HETATM 25 C CAT Y01 . . . L 5 157.582 137.05 137.654 1 52.04 ? CAT Y01 1211 A 1 HETATM 26 C CAR Y01 . . . L 5 158.44 136.359 138.719 1 52.04 ? CAR Y01 1211 A 1 HETATM 27 C CBC Y01 . . . L 5 158.887 137.351 139.798 1 52.04 ? CBC Y01 1211 A 1 HETATM 28 O OAW Y01 . . . L 5 159.665 136.63 140.797 1 52.04 ? OAW Y01 1211 A 1 HETATM 29 C CAY Y01 . . . L 5 161.057 136.811 140.948 1 52.04 ? CAY Y01 1211 A 1 HETATM 30 O OAG Y01 . . . L 5 161.484 137.858 140.502 1 52.04 ? OAG Y01 1211 A 1 HETATM 31 C CAM Y01 . . . L 5 162.049 135.795 141.628 1 52.04 ? CAM Y01 1211 A 1 HETATM 32 C CAL Y01 . . . L 5 162.485 136.189 143.057 1 52.04 ? CAL Y01 1211 A 1 HETATM 33 C CAX Y01 . . . L 5 161.363 136.84 143.982 1 52.04 ? CAX Y01 1211 A 1 HETATM 34 O OAH Y01 . . . L 5 160.203 136.394 143.872 1 52.04 ? OAH Y01 1211 A 1 HETATM 35 O OAF Y01 . . . L 5 161.716 137.755 144.763 1 52.04 ? OAF Y01 1211 A 1 HETATM 36 H HAA1 Y01 . . . L 5 146.787 142.572 129.376 1 52.04 ? HAA1 Y01 1211 A 1 HETATM 37 H HAA2 Y01 . . . L 5 146.137 141.209 129.137 1 52.04 ? HAA2 Y01 1211 A 1 HETATM 38 H HAA3 Y01 . . . L 5 147.634 141.393 128.845 1 52.04 ? HAA3 Y01 1211 A 1 HETATM 39 H HBA Y01 . . . L 5 146.719 141.771 131.512 1 52.04 ? HBA Y01 1211 A 1 HETATM 40 H HAB1 Y01 . . . L 5 146.818 139.496 132.073 1 52.04 ? HAB1 Y01 1211 A 1 HETATM 41 H HAB2 Y01 . . . L 5 147.389 139.115 130.682 1 52.04 ? HAB2 Y01 1211 A 1 HETATM 42 H HAB3 Y01 . . . L 5 145.932 139.577 130.826 1 52.04 ? HAB3 Y01 1211 A 1 HETATM 43 H HAN1 Y01 . . . L 5 148.881 142.342 131.661 1 52.04 ? HAN1 Y01 1211 A 1 HETATM 44 H HAN2 Y01 . . . L 5 149.304 141.464 130.495 1 52.04 ? HAN2 Y01 1211 A 1 HETATM 45 H HAJ1 Y01 . . . L 5 148.812 140.301 133.046 1 52.04 ? HAJ1 Y01 1211 A 1 HETATM 46 H HAJ2 Y01 . . . L 5 149.483 139.568 131.874 1 52.04 ? HAJ2 Y01 1211 A 1 HETATM 47 H HAO1 Y01 . . . L 5 151.405 141.135 132.184 1 52.04 ? HAO1 Y01 1211 A 1 HETATM 48 H HAO2 Y01 . . . L 5 150.699 141.57 133.447 1 52.04 ? HAO2 Y01 1211 A 1 HETATM 49 H HBB Y01 . . . L 5 150.838 139.206 134.196 1 52.04 ? HBB Y01 1211 A 1 HETATM 50 H HAC1 Y01 . . . L 5 153.017 138.691 132.452 1 52.04 ? HAC1 Y01 1211 A 1 HETATM 51 H HAC2 Y01 . . . L 5 152.006 137.695 132.988 1 52.04 ? HAC2 Y01 1211 A 1 HETATM 52 H HAC3 Y01 . . . L 5 151.645 138.6 131.789 1 52.04 ? HAC3 Y01 1211 A 1 HETATM 53 H HBE Y01 . . . L 5 153.262 140.623 134.058 1 52.04 ? HBE Y01 1211 A 1 HETATM 54 H HAP1 Y01 . . . L 5 152.143 142.196 135.294 1 52.04 ? HAP1 Y01 1211 A 1 HETATM 55 H HAP2 Y01 . . . L 5 151.131 141.134 135.847 1 52.04 ? HAP2 Y01 1211 A 1 HETATM 56 H HAQ1 Y01 . . . L 5 152.435 140.855 137.652 1 52.04 ? HAQ1 Y01 1211 A 1 HETATM 57 H HAQ2 Y01 . . . L 5 153.315 141.958 137.216 1 52.04 ? HAQ2 Y01 1211 A 1 HETATM 58 H HBG Y01 . . . L 5 154.678 140.654 135.969 1 52.04 ? HBG Y01 1211 A 1 HETATM 59 H HBD Y01 . . . L 5 153.883 139.079 138.052 1 52.04 ? HBD Y01 1211 A 1 HETATM 60 H HAE1 Y01 . . . L 5 151.981 137.409 135.694 1 52.04 ? HAE1 Y01 1211 A 1 HETATM 61 H HAE2 Y01 . . . L 5 151.393 138.61 136.536 1 52.04 ? HAE2 Y01 1211 A 1 HETATM 62 H HAE3 Y01 . . . L 5 152.536 137.752 137.011 1 52.04 ? HAE3 Y01 1211 A 1 HETATM 63 H HAU1 Y01 . . . L 5 154.884 138.679 134.237 1 52.04 ? HAU1 Y01 1211 A 1 HETATM 64 H HAU2 Y01 . . . L 5 153.758 137.562 134.341 1 52.04 ? HAU2 Y01 1211 A 1 HETATM 65 H HAS1 Y01 . . . L 5 155.598 136.926 135.405 1 52.04 ? HAS1 Y01 1211 A 1 HETATM 66 H HAS2 Y01 . . . L 5 154.419 136.913 136.342 1 52.04 ? HAS2 Y01 1211 A 1 HETATM 67 H HBF Y01 . . . L 5 156.242 139.05 136.412 1 52.04 ? HBF Y01 1211 A 1 HETATM 68 H HAK1 Y01 . . . L 5 155.554 141.253 137.719 1 52.04 ? HAK1 Y01 1211 A 1 HETATM 69 H HAK2 Y01 . . . L 5 154.567 141.006 138.779 1 52.04 ? HAK2 Y01 1211 A 1 HETATM 70 H HAI Y01 . . . L 5 156.892 140.634 139.45 1 52.04 ? HAI Y01 1211 A 1 HETATM 71 H HAV1 Y01 . . . L 5 157.795 138.684 140.967 1 52.04 ? HAV1 Y01 1211 A 1 HETATM 72 H HAV2 Y01 . . . L 5 157.055 137.322 140.767 1 52.04 ? HAV2 Y01 1211 A 1 HETATM 73 H HBC Y01 . . . L 5 159.426 138.03 139.357 1 52.04 ? HBC Y01 1211 A 1 HETATM 74 H HAD1 Y01 . . . L 5 155.298 136.823 139.675 1 52.04 ? HAD1 Y01 1211 A 1 HETATM 75 H HAD2 Y01 . . . L 5 154.34 136.924 138.527 1 52.04 ? HAD2 Y01 1211 A 1 HETATM 76 H HAD3 Y01 . . . L 5 155.464 135.801 138.527 1 52.04 ? HAD3 Y01 1211 A 1 HETATM 77 H HAT1 Y01 . . . L 5 157.369 136.386 136.981 1 52.04 ? HAT1 Y01 1211 A 1 HETATM 78 H HAT2 Y01 . . . L 5 158.125 137.703 137.188 1 52.04 ? HAT2 Y01 1211 A 1 HETATM 79 H HAR1 Y01 . . . L 5 159.236 135.995 138.303 1 52.04 ? HAR1 Y01 1211 A 1 HETATM 80 H HAR2 Y01 . . . L 5 157.986 135.584 139.084 1 52.04 ? HAR2 Y01 1211 A 1 HETATM 81 H HAM1 Y01 . . . L 5 161.632 134.919 141.697 1 52.04 ? HAM1 Y01 1211 A 1 HETATM 82 H HAM2 Y01 . . . L 5 162.853 135.65 141.106 1 52.04 ? HAM2 Y01 1211 A 1 HETATM 83 H HAL1 Y01 . . . L 5 163.227 136.809 143.047 1 52.04 ? HAL1 Y01 1211 A 1 HETATM 84 H HAL2 Y01 . . . L 5 162.822 135.425 143.546 1 52.04 ? HAL2 Y01 1211 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 84 #