data_7N73
#
_model_server_result.job_id            rG2OfU1T9GE-nroElxPJew 
_model_server_result.datetime_utc      '2024-11-04 22:45:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n73 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1201}' 
#
_entry.id    7N73 
#
_exptl.entry_id    7N73 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7N73 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N73 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 508 A ASP 508 1_555 D MG MG . A MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc2 A O THR 510 A THR 510 1_555 D MG MG . A MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? 
metalc ? metalc3 A OD1 ASP 873 A ASP 873 1_555 D MG MG . A MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
metalc ? metalc4 B O3B ADP . A ADP 1201 1_555 E MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc5 B O2A ADP . A ADP 1201 1_555 E MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     7N73 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 1201 1201 ADP ADP . 
C 3 ALF A 1 1202 1202 ALF ALF . 
D 4 MG A 1 1203 1203 MG MG . 
E 4 MG A 1 1204 1204 MG MG . 
F 5 Y01 A 1 1205 1301 Y01 Y01 . 
G 5 Y01 A 1 1206 1302 Y01 Y01 . 
H 6 HOH A 1 1301 1304 HOH HOH . 
H 6 HOH A 2 1302 1305 HOH HOH . 
H 6 HOH A 3 1303 1303 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 173.756 136.291 188.741 1 57.24 ? PB ADP 1201 A 1 
HETATM 2 O O1B ADP . . . B 2 173.066 136.274 187.404 1 57.24 ? O1B ADP 1201 A 1 
HETATM 3 O O2B ADP . . . B 2 174.887 135.304 188.859 1 57.24 ? O2B ADP 1201 A 1 
HETATM 4 O O3B ADP . . . B 2 172.806 136.307 189.91 1 57.24 ? O3B ADP 1201 A 1 
HETATM 5 P PA ADP . . . B 2 174.187 138.727 190.051 1 57.24 ? PA ADP 1201 A 1 
HETATM 6 O O1A ADP . . . B 2 175.043 139.959 189.883 1 57.24 ? O1A ADP 1201 A 1 
HETATM 7 O O2A ADP . . . B 2 172.7 138.851 190.261 1 57.24 ? O2A ADP 1201 A 1 
HETATM 8 O O3A ADP . . . B 2 174.462 137.736 188.814 1 57.24 ? O3A ADP 1201 A 1 
HETATM 9 O O5' ADP . . . B 2 174.813 137.917 191.289 1 57.24 ? O5' ADP 1201 A 1 
HETATM 10 C C5' ADP . . . B 2 176.228 137.821 191.424 1 57.24 ? C5' ADP 1201 A 1 
HETATM 11 C C4' ADP . . . B 2 176.59 136.805 192.499 1 57.24 ? C4' ADP 1201 A 1 
HETATM 12 O O4' ADP . . . B 2 175.737 136.963 193.63 1 57.24 ? O4' ADP 1201 A 1 
HETATM 13 C C3' ADP . . . B 2 176.432 135.369 192.026 1 57.24 ? C3' ADP 1201 A 1 
HETATM 14 O O3' ADP . . . B 2 177.713 134.776 191.795 1 57.24 ? O3' ADP 1201 A 1 
HETATM 15 C C2' ADP . . . B 2 175.7 134.646 193.139 1 57.24 ? C2' ADP 1201 A 1 
HETATM 16 O O2' ADP . . . B 2 176.504 133.582 193.65 1 57.24 ? O2' ADP 1201 A 1 
HETATM 17 C C1' ADP . . . B 2 175.449 135.692 194.219 1 57.24 ? C1' ADP 1201 A 1 
HETATM 18 N N9 ADP . . . B 2 174.07 135.687 194.787 1 57.24 ? N9 ADP 1201 A 1 
HETATM 19 C C8 ADP . . . B 2 172.898 135.442 194.163 1 57.24 ? C8 ADP 1201 A 1 
HETATM 20 N N7 ADP . . . B 2 171.857 135.535 195.033 1 57.24 ? N7 ADP 1201 A 1 
HETATM 21 C C5 ADP . . . B 2 172.352 135.849 196.244 1 57.24 ? C5 ADP 1201 A 1 
HETATM 22 C C6 ADP . . . B 2 171.829 136.11 197.609 1 57.24 ? C6 ADP 1201 A 1 
HETATM 23 N N6 ADP . . . B 2 170.522 136.058 197.956 1 57.24 ? N6 ADP 1201 A 1 
HETATM 24 N N1 ADP . . . B 2 172.721 136.399 198.571 1 57.24 ? N1 ADP 1201 A 1 
HETATM 25 C C2 ADP . . . B 2 174.036 136.47 198.337 1 57.24 ? C2 ADP 1201 A 1 
HETATM 26 N N3 ADP . . . B 2 174.576 136.254 197.13 1 57.24 ? N3 ADP 1201 A 1 
HETATM 27 C C4 ADP . . . B 2 173.808 135.942 196.067 1 57.24 ? C4 ADP 1201 A 1 
HETATM 28 H "H5'1" ADP . . . B 2 176.64 138.796 191.696 1 57.24 ? "H5'1" ADP 1201 A 1 
HETATM 29 H "H5'2" ADP . . . B 2 176.666 137.525 190.469 1 57.24 ? "H5'2" ADP 1201 A 1 
HETATM 30 H H4' ADP . . . B 2 177.636 136.962 192.794 1 57.24 ? H4' ADP 1201 A 1 
HETATM 31 H H3' ADP . . . B 2 175.827 135.349 191.112 1 57.24 ? H3' ADP 1201 A 1 
HETATM 32 H HO3' ADP . . . B 2 177.6 133.913 191.372 1 57.24 ? HO3' ADP 1201 A 1 
HETATM 33 H H2' ADP . . . B 2 174.755 134.251 192.746 1 57.24 ? H2' ADP 1201 A 1 
HETATM 34 H HO2' ADP . . . B 2 176.539 132.863 193.005 1 57.24 ? HO2' ADP 1201 A 1 
HETATM 35 H H1' ADP . . . B 2 176.165 135.506 195.03 1 57.24 ? H1' ADP 1201 A 1 
HETATM 36 H H8 ADP . . . B 2 172.798 135.2 193.115 1 57.24 ? H8 ADP 1201 A 1 
HETATM 37 H HN61 ADP . . . B 2 170.252 136.244 198.911 1 57.24 ? HN61 ADP 1201 A 1 
HETATM 38 H HN62 ADP . . . B 2 169.817 135.84 197.281 1 57.24 ? HN62 ADP 1201 A 1 
HETATM 39 H H2 ADP . . . B 2 174.682 136.721 199.161 1 57.24 ? H2 ADP 1201 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#