data_7N77 # _model_server_result.job_id VKgCzjgqTwEWFdB2LZN4rQ _model_server_result.datetime_utc '2024-11-23 10:04:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 7N77 # _exptl.entry_id 7N77 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N77 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 510 A THR 510 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 A OD1 ASP 873 A ASP 873 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 380 n n CBA CAB Y01 sing 381 n n CBA CAN Y01 sing 382 n n CAN CAJ Y01 sing 383 n n CAJ CAO Y01 sing 384 n n CAO CBB Y01 sing 385 n n CBB CAC Y01 sing 386 n n CBB CBE Y01 sing 387 n n CBE CAP Y01 sing 388 n n CBE CBI Y01 sing 389 n n CAP CAQ Y01 sing 390 n n CAQ CBG Y01 sing 391 n n CBG CBI Y01 sing 392 n n CBG CBD Y01 sing 393 n n CBI CAE Y01 sing 394 n n CBI CAU Y01 sing 395 n n CAU CAS Y01 sing 396 n n CAS CBF Y01 sing 397 n n CBF CBD Y01 sing 398 n n CBF CBH Y01 sing 399 n n CBD CAK Y01 sing 400 n n CAK CAI Y01 sing 401 n n CAI CAZ Y01 doub 402 n n CAZ CAV Y01 sing 403 n n CAZ CBH Y01 sing 404 n n CAV CBC Y01 sing 405 n n CBH CAD Y01 sing 406 n n CBH CAT Y01 sing 407 n n CAT CAR Y01 sing 408 n n CAR CBC Y01 sing 409 n n CBC OAW Y01 sing 410 n n OAW CAY Y01 sing 411 n n CAY OAG Y01 doub 412 n n CAY CAM Y01 sing 413 n n CAM CAL Y01 sing 414 n n CAL CAX Y01 sing 415 n n CAX OAH Y01 sing 416 n n CAX OAF Y01 doub 417 n n CAA HAA1 Y01 sing 418 n n CAA HAA2 Y01 sing 419 n n CAA HAA3 Y01 sing 420 n n CBA HBA Y01 sing 421 n n CAB HAB1 Y01 sing 422 n n CAB HAB2 Y01 sing 423 n n CAB HAB3 Y01 sing 424 n n CAN HAN1 Y01 sing 425 n n CAN HAN2 Y01 sing 426 n n CAJ HAJ1 Y01 sing 427 n n CAJ HAJ2 Y01 sing 428 n n CAO HAO1 Y01 sing 429 n n CAO HAO2 Y01 sing 430 n n CBB HBB Y01 sing 431 n n CAC HAC1 Y01 sing 432 n n CAC HAC2 Y01 sing 433 n n CAC HAC3 Y01 sing 434 n n CBE HBE Y01 sing 435 n n CAP HAP1 Y01 sing 436 n n CAP HAP2 Y01 sing 437 n n CAQ HAQ1 Y01 sing 438 n n CAQ HAQ2 Y01 sing 439 n n CBG HBG Y01 sing 440 n n CBD HBD Y01 sing 441 n n CAE HAE1 Y01 sing 442 n n CAE HAE2 Y01 sing 443 n n CAE HAE3 Y01 sing 444 n n CAU HAU1 Y01 sing 445 n n CAU HAU2 Y01 sing 446 n n CAS HAS1 Y01 sing 447 n n CAS HAS2 Y01 sing 448 n n CBF HBF Y01 sing 449 n n CAK HAK1 Y01 sing 450 n n CAK HAK2 Y01 sing 451 n n CAI HAI Y01 sing 452 n n CAV HAV1 Y01 sing 453 n n CAV HAV2 Y01 sing 454 n n CBC HBC Y01 sing 455 n n CAD HAD1 Y01 sing 456 n n CAD HAD2 Y01 sing 457 n n CAD HAD3 Y01 sing 458 n n CAT HAT1 Y01 sing 459 n n CAT HAT2 Y01 sing 460 n n CAR HAR1 Y01 sing 461 n n CAR HAR2 Y01 sing 462 n n CAM HAM1 Y01 sing 463 n n CAM HAM2 Y01 sing 464 n n CAL HAL1 Y01 sing 465 n n CAL HAL2 Y01 sing 466 n n OAH HAH Y01 sing 467 n n # _atom_sites.entry_id 7N77 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALF A 1 1201 1201 ALF ALF . C 3 MG A 1 1202 1202 MG MG . D 4 Y01 A 1 1203 1301 Y01 Y01 . E 4 Y01 A 1 1204 1302 Y01 Y01 . F 5 HOH A 1 1301 1304 HOH HOH . F 5 HOH A 2 1302 1303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . D 4 147.222 167.371 161.349 1 15.47 ? CAA Y01 1203 A 1 HETATM 2 C CBA Y01 . . . D 4 148 166.058 161.494 1 15.47 ? CBA Y01 1203 A 1 HETATM 3 C CAB Y01 . . . D 4 147.896 165.301 160.168 1 15.47 ? CAB Y01 1203 A 1 HETATM 4 C CAN Y01 . . . D 4 149.479 166.265 161.944 1 15.47 ? CAN Y01 1203 A 1 HETATM 5 C CAJ Y01 . . . D 4 150.12 165.096 162.727 1 15.47 ? CAJ Y01 1203 A 1 HETATM 6 C CAO Y01 . . . D 4 150.875 165.465 164.014 1 15.47 ? CAO Y01 1203 A 1 HETATM 7 C CBB Y01 . . . D 4 151.102 164.27 164.956 1 15.47 ? CBB Y01 1203 A 1 HETATM 8 C CAC Y01 . . . D 4 151.404 162.97 164.185 1 15.47 ? CAC Y01 1203 A 1 HETATM 9 C CBE Y01 . . . D 4 152.232 164.607 165.943 1 15.47 ? CBE Y01 1203 A 1 HETATM 10 C CAP Y01 . . . D 4 152.319 166.067 166.46 1 15.47 ? CAP Y01 1203 A 1 HETATM 11 C CAQ Y01 . . . D 4 153.126 166.031 167.75 1 15.47 ? CAQ Y01 1203 A 1 HETATM 12 C CBG Y01 . . . D 4 153.346 164.532 167.904 1 15.47 ? CBG Y01 1203 A 1 HETATM 13 C CBI Y01 . . . D 4 152.136 163.843 167.267 1 15.47 ? CBI Y01 1203 A 1 HETATM 14 C CAE Y01 . . . D 4 150.763 163.994 168.029 1 15.47 ? CAE Y01 1203 A 1 HETATM 15 C CAU Y01 . . . D 4 152.387 162.339 167.187 1 15.47 ? CAU Y01 1203 A 1 HETATM 16 C CAS Y01 . . . D 4 152.61 161.819 168.599 1 15.47 ? CAS Y01 1203 A 1 HETATM 17 C CBF Y01 . . . D 4 153.677 162.61 169.358 1 15.47 ? CBF Y01 1203 A 1 HETATM 18 C CBD Y01 . . . D 4 153.417 164.118 169.337 1 15.47 ? CBD Y01 1203 A 1 HETATM 19 C CAK Y01 . . . D 4 154.622 164.881 169.9 1 15.47 ? CAK Y01 1203 A 1 HETATM 20 C CAI Y01 . . . D 4 155.258 164.106 171.011 1 15.47 ? CAI Y01 1203 A 1 HETATM 21 C CAZ Y01 . . . D 4 154.862 162.927 171.535 1 15.47 ? CAZ Y01 1203 A 1 HETATM 22 C CAV Y01 . . . D 4 155.826 161.95 172.229 1 15.47 ? CAV Y01 1203 A 1 HETATM 23 C CBH Y01 . . . D 4 153.738 162.243 170.84 1 15.47 ? CBH Y01 1203 A 1 HETATM 24 C CAD Y01 . . . D 4 152.524 162.844 171.592 1 15.47 ? CAD Y01 1203 A 1 HETATM 25 C CAT Y01 . . . D 4 153.834 160.725 171.035 1 15.47 ? CAT Y01 1203 A 1 HETATM 26 C CAR Y01 . . . D 4 154.01 160.214 172.465 1 15.47 ? CAR Y01 1203 A 1 HETATM 27 C CBC Y01 . . . D 4 155.31 160.732 173.11 1 15.47 ? CBC Y01 1203 A 1 HETATM 28 O OAW Y01 . . . D 4 155.037 161.031 174.509 1 15.47 ? OAW Y01 1203 A 1 HETATM 29 C CAY Y01 . . . D 4 155.558 160.241 175.56 1 15.47 ? CAY Y01 1203 A 1 HETATM 30 O OAG Y01 . . . D 4 156.698 159.862 175.386 1 15.47 ? OAG Y01 1203 A 1 HETATM 31 C CAM Y01 . . . D 4 154.794 159.83 176.881 1 15.47 ? CAM Y01 1203 A 1 HETATM 32 C CAL Y01 . . . D 4 155.285 160.547 178.161 1 15.47 ? CAL Y01 1203 A 1 HETATM 33 C CAX Y01 . . . D 4 155.017 159.787 179.539 1 15.47 ? CAX Y01 1203 A 1 HETATM 34 O OAH Y01 . . . D 4 153.932 159.184 179.665 1 15.47 ? OAH Y01 1203 A 1 HETATM 35 O OAF Y01 . . . D 4 155.915 159.84 180.408 1 15.47 ? OAF Y01 1203 A 1 HETATM 36 H HAA1 Y01 . . . D 4 146.96 167.759 162.198 1 15.47 ? HAA1 Y01 1203 A 1 HETATM 37 H HAA2 Y01 . . . D 4 146.387 167.284 160.863 1 15.47 ? HAA2 Y01 1203 A 1 HETATM 38 H HAA3 Y01 . . . D 4 147.704 168.069 160.878 1 15.47 ? HAA3 Y01 1203 A 1 HETATM 39 H HBA Y01 . . . D 4 147.537 165.531 162.164 1 15.47 ? HBA Y01 1203 A 1 HETATM 40 H HAB1 Y01 . . . D 4 148.223 164.389 160.224 1 15.47 ? HAB1 Y01 1203 A 1 HETATM 41 H HAB2 Y01 . . . D 4 148.381 165.715 159.438 1 15.47 ? HAB2 Y01 1203 A 1 HETATM 42 H HAB3 Y01 . . . D 4 146.989 165.214 159.84 1 15.47 ? HAB3 Y01 1203 A 1 HETATM 43 H HAN1 Y01 . . . D 4 149.54 167.073 162.476 1 15.47 ? HAN1 Y01 1203 A 1 HETATM 44 H HAN2 Y01 . . . D 4 150.029 166.457 161.169 1 15.47 ? HAN2 Y01 1203 A 1 HETATM 45 H HAJ1 Y01 . . . D 4 149.434 164.452 162.966 1 15.47 ? HAJ1 Y01 1203 A 1 HETATM 46 H HAJ2 Y01 . . . D 4 150.731 164.61 162.151 1 15.47 ? HAJ2 Y01 1203 A 1 HETATM 47 H HAO1 Y01 . . . D 4 151.733 165.885 163.844 1 15.47 ? HAO1 Y01 1203 A 1 HETATM 48 H HAO2 Y01 . . . D 4 150.385 166.153 164.49 1 15.47 ? HAO2 Y01 1203 A 1 HETATM 49 H HBB Y01 . . . D 4 150.318 164.125 165.499 1 15.47 ? HBB Y01 1203 A 1 HETATM 50 H HAC1 Y01 . . . D 4 151.803 162.248 164.68 1 15.47 ? HAC1 Y01 1203 A 1 HETATM 51 H HAC2 Y01 . . . D 4 150.609 162.553 163.813 1 15.47 ? HAC2 Y01 1203 A 1 HETATM 52 H HAC3 Y01 . . . D 4 152.005 163.1 163.437 1 15.47 ? HAC3 Y01 1203 A 1 HETATM 53 H HBE Y01 . . . D 4 153.081 164.374 165.544 1 15.47 ? HBE Y01 1203 A 1 HETATM 54 H HAP1 Y01 . . . D 4 152.763 166.667 165.841 1 15.47 ? HAP1 Y01 1203 A 1 HETATM 55 H HAP2 Y01 . . . D 4 151.434 166.42 166.644 1 15.47 ? HAP2 Y01 1203 A 1 HETATM 56 H HAQ1 Y01 . . . D 4 152.694 166.425 168.524 1 15.47 ? HAQ1 Y01 1203 A 1 HETATM 57 H HAQ2 Y01 . . . D 4 153.969 166.509 167.783 1 15.47 ? HAQ2 Y01 1203 A 1 HETATM 58 H HBG Y01 . . . D 4 154.217 164.298 167.548 1 15.47 ? HBG Y01 1203 A 1 HETATM 59 H HBD Y01 . . . D 4 152.618 164.478 169.736 1 15.47 ? HBD Y01 1203 A 1 HETATM 60 H HAE1 Y01 . . . D 4 150.067 163.411 167.688 1 15.47 ? HAE1 Y01 1203 A 1 HETATM 61 H HAE2 Y01 . . . D 4 150.421 164.899 168.089 1 15.47 ? HAE2 Y01 1203 A 1 HETATM 62 H HAE3 Y01 . . . D 4 150.751 163.711 168.952 1 15.47 ? HAE3 Y01 1203 A 1 HETATM 63 H HAU1 Y01 . . . D 4 153.144 162.067 166.644 1 15.47 ? HAU1 Y01 1203 A 1 HETATM 64 H HAU2 Y01 . . . D 4 151.57 161.931 166.864 1 15.47 ? HAU2 Y01 1203 A 1 HETATM 65 H HAS1 Y01 . . . D 4 152.741 160.868 168.461 1 15.47 ? HAS1 Y01 1203 A 1 HETATM 66 H HAS2 Y01 . . . D 4 151.776 161.856 169.077 1 15.47 ? HAS2 Y01 1203 A 1 HETATM 67 H HBF Y01 . . . D 4 154.5 162.484 168.859 1 15.47 ? HBF Y01 1203 A 1 HETATM 68 H HAK1 Y01 . . . D 4 155.196 165.137 169.166 1 15.47 ? HAK1 Y01 1203 A 1 HETATM 69 H HAK2 Y01 . . . D 4 154.263 165.757 170.109 1 15.47 ? HAK2 Y01 1203 A 1 HETATM 70 H HAI Y01 . . . D 4 156.061 164.538 171.192 1 15.47 ? HAI Y01 1203 A 1 HETATM 71 H HAV1 Y01 . . . D 4 156.431 161.6 171.563 1 15.47 ? HAV1 Y01 1203 A 1 HETATM 72 H HAV2 Y01 . . . D 4 156.351 162.519 172.811 1 15.47 ? HAV2 Y01 1203 A 1 HETATM 73 H HBC Y01 . . . D 4 155.954 160.01 173.043 1 15.47 ? HBC Y01 1203 A 1 HETATM 74 H HAD1 Y01 . . . D 4 152.404 162.336 172.404 1 15.47 ? HAD1 Y01 1203 A 1 HETATM 75 H HAD2 Y01 . . . D 4 152.654 163.741 171.938 1 15.47 ? HAD2 Y01 1203 A 1 HETATM 76 H HAD3 Y01 . . . D 4 151.681 162.789 171.116 1 15.47 ? HAD3 Y01 1203 A 1 HETATM 77 H HAT1 Y01 . . . D 4 153.037 160.302 170.683 1 15.47 ? HAT1 Y01 1203 A 1 HETATM 78 H HAT2 Y01 . . . D 4 154.555 160.387 170.48 1 15.47 ? HAT2 Y01 1203 A 1 HETATM 79 H HAR1 Y01 . . . D 4 154.053 159.245 172.452 1 15.47 ? HAR1 Y01 1203 A 1 HETATM 80 H HAR2 Y01 . . . D 4 153.225 160.401 173.002 1 15.47 ? HAR2 Y01 1203 A 1 HETATM 81 H HAM1 Y01 . . . D 4 153.85 160.037 176.793 1 15.47 ? HAM1 Y01 1203 A 1 HETATM 82 H HAM2 Y01 . . . D 4 154.827 158.876 177.052 1 15.47 ? HAM2 Y01 1203 A 1 HETATM 83 H HAL1 Y01 . . . D 4 154.895 161.43 178.253 1 15.47 ? HAL1 Y01 1203 A 1 HETATM 84 H HAL2 Y01 . . . D 4 156.24 160.712 178.127 1 15.47 ? HAL2 Y01 1203 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 84 #