data_7N78 # _model_server_result.job_id WV0AaSomJdGGkJNMZZOAsQ _model_server_result.datetime_utc '2024-11-21 14:24:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1204}' # _entry.id 7N78 # _exptl.entry_id 7N78 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N78 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 508 A ASP 508 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc2 A O THR 510 A THR 510 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc3 A OD1 ASP 873 A ASP 873 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 B O2 PO4 . A PO4 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 642 n n CBA CAB Y01 sing 643 n n CBA CAN Y01 sing 644 n n CAN CAJ Y01 sing 645 n n CAJ CAO Y01 sing 646 n n CAO CBB Y01 sing 647 n n CBB CAC Y01 sing 648 n n CBB CBE Y01 sing 649 n n CBE CAP Y01 sing 650 n n CBE CBI Y01 sing 651 n n CAP CAQ Y01 sing 652 n n CAQ CBG Y01 sing 653 n n CBG CBI Y01 sing 654 n n CBG CBD Y01 sing 655 n n CBI CAE Y01 sing 656 n n CBI CAU Y01 sing 657 n n CAU CAS Y01 sing 658 n n CAS CBF Y01 sing 659 n n CBF CBD Y01 sing 660 n n CBF CBH Y01 sing 661 n n CBD CAK Y01 sing 662 n n CAK CAI Y01 sing 663 n n CAI CAZ Y01 doub 664 n n CAZ CAV Y01 sing 665 n n CAZ CBH Y01 sing 666 n n CAV CBC Y01 sing 667 n n CBH CAD Y01 sing 668 n n CBH CAT Y01 sing 669 n n CAT CAR Y01 sing 670 n n CAR CBC Y01 sing 671 n n CBC OAW Y01 sing 672 n n OAW CAY Y01 sing 673 n n CAY OAG Y01 doub 674 n n CAY CAM Y01 sing 675 n n CAM CAL Y01 sing 676 n n CAL CAX Y01 sing 677 n n CAX OAH Y01 sing 678 n n CAX OAF Y01 doub 679 n n CAA HAA1 Y01 sing 680 n n CAA HAA2 Y01 sing 681 n n CAA HAA3 Y01 sing 682 n n CBA HBA Y01 sing 683 n n CAB HAB1 Y01 sing 684 n n CAB HAB2 Y01 sing 685 n n CAB HAB3 Y01 sing 686 n n CAN HAN1 Y01 sing 687 n n CAN HAN2 Y01 sing 688 n n CAJ HAJ1 Y01 sing 689 n n CAJ HAJ2 Y01 sing 690 n n CAO HAO1 Y01 sing 691 n n CAO HAO2 Y01 sing 692 n n CBB HBB Y01 sing 693 n n CAC HAC1 Y01 sing 694 n n CAC HAC2 Y01 sing 695 n n CAC HAC3 Y01 sing 696 n n CBE HBE Y01 sing 697 n n CAP HAP1 Y01 sing 698 n n CAP HAP2 Y01 sing 699 n n CAQ HAQ1 Y01 sing 700 n n CAQ HAQ2 Y01 sing 701 n n CBG HBG Y01 sing 702 n n CBD HBD Y01 sing 703 n n CAE HAE1 Y01 sing 704 n n CAE HAE2 Y01 sing 705 n n CAE HAE3 Y01 sing 706 n n CAU HAU1 Y01 sing 707 n n CAU HAU2 Y01 sing 708 n n CAS HAS1 Y01 sing 709 n n CAS HAS2 Y01 sing 710 n n CBF HBF Y01 sing 711 n n CAK HAK1 Y01 sing 712 n n CAK HAK2 Y01 sing 713 n n CAI HAI Y01 sing 714 n n CAV HAV1 Y01 sing 715 n n CAV HAV2 Y01 sing 716 n n CBC HBC Y01 sing 717 n n CAD HAD1 Y01 sing 718 n n CAD HAD2 Y01 sing 719 n n CAD HAD3 Y01 sing 720 n n CAT HAT1 Y01 sing 721 n n CAT HAT2 Y01 sing 722 n n CAR HAR1 Y01 sing 723 n n CAR HAR2 Y01 sing 724 n n CAM HAM1 Y01 sing 725 n n CAM HAM2 Y01 sing 726 n n CAL HAL1 Y01 sing 727 n n CAL HAL2 Y01 sing 728 n n OAH HAH Y01 sing 729 n n # _atom_sites.entry_id 7N78 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1201 1201 PO4 PO4 . C 3 MG A 1 1202 1202 MG MG . D 4 SPM A 1 1203 1301 SPM SPM . E 5 Y01 A 1 1204 1401 Y01 Y01 . F 5 Y01 A 1 1205 1402 Y01 Y01 . G 6 PC1 A 1 1206 1403 PC1 PC1 . H 7 LMT A 1 1207 1404 LMT LMT . I 7 LMT A 1 1208 1405 LMT LMT . J 7 LMT A 1 1209 1406 LMT LMT . K 6 PC1 A 1 1210 1407 PC1 PC1 . L 5 Y01 A 1 1211 1408 Y01 Y01 . M 8 HOH A 1 1301 1306 HOH HOH . M 8 HOH A 2 1302 1303 HOH HOH . M 8 HOH A 3 1303 1302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 5 126.031 144.118 128.428 1 45.97 ? CAA Y01 1204 A 1 HETATM 2 C CBA Y01 . . . E 5 127.496 143.891 128.828 1 45.97 ? CBA Y01 1204 A 1 HETATM 3 C CAB Y01 . . . E 5 128.278 145.171 128.523 1 45.97 ? CAB Y01 1204 A 1 HETATM 4 C CAN Y01 . . . E 5 127.651 143.442 130.308 1 45.97 ? CAN Y01 1204 A 1 HETATM 5 C CAJ Y01 . . . E 5 127.063 142.059 130.667 1 45.97 ? CAJ Y01 1204 A 1 HETATM 6 C CAO Y01 . . . E 5 127.02 141.705 132.162 1 45.97 ? CAO Y01 1204 A 1 HETATM 7 C CBB Y01 . . . E 5 128.406 141.66 132.843 1 45.97 ? CBB Y01 1204 A 1 HETATM 8 C CAC Y01 . . . E 5 128.433 142.51 134.12 1 45.97 ? CAC Y01 1204 A 1 HETATM 9 C CBE Y01 . . . E 5 128.785 140.181 133.086 1 45.97 ? CBE Y01 1204 A 1 HETATM 10 C CAP Y01 . . . E 5 129.181 139.382 131.805 1 45.97 ? CAP Y01 1204 A 1 HETATM 11 C CAQ Y01 . . . E 5 130.325 138.463 132.161 1 45.97 ? CAQ Y01 1204 A 1 HETATM 12 C CBG Y01 . . . E 5 130.171 138.471 133.664 1 45.97 ? CBG Y01 1204 A 1 HETATM 13 C CBI Y01 . . . E 5 130.001 139.962 134.014 1 45.97 ? CBI Y01 1204 A 1 HETATM 14 C CAE Y01 . . . E 5 131.228 140.882 133.705 1 45.97 ? CAE Y01 1204 A 1 HETATM 15 C CAU Y01 . . . E 5 129.746 140.113 135.521 1 45.97 ? CAU Y01 1204 A 1 HETATM 16 C CAS Y01 . . . E 5 130.909 139.484 136.248 1 45.97 ? CAS Y01 1204 A 1 HETATM 17 C CBF Y01 . . . E 5 131.028 138.019 135.894 1 45.97 ? CBF Y01 1204 A 1 HETATM 18 C CBD Y01 . . . E 5 131.349 137.891 134.408 1 45.97 ? CBD Y01 1204 A 1 HETATM 19 C CAK Y01 . . . E 5 131.382 136.415 134.023 1 45.97 ? CAK Y01 1204 A 1 HETATM 20 C CAI Y01 . . . E 5 132.475 135.807 134.803 1 45.97 ? CAI Y01 1204 A 1 HETATM 21 C CAZ Y01 . . . E 5 132.761 136.09 136.088 1 45.97 ? CAZ Y01 1204 A 1 HETATM 22 C CAV Y01 . . . E 5 133.501 135.162 137.07 1 45.97 ? CAV Y01 1204 A 1 HETATM 23 C CBH Y01 . . . E 5 132.128 137.303 136.717 1 45.97 ? CBH Y01 1204 A 1 HETATM 24 C CAD Y01 . . . E 5 133.352 138.24 136.86 1 45.97 ? CAD Y01 1204 A 1 HETATM 25 C CAT Y01 . . . E 5 131.546 136.923 138.078 1 45.97 ? CAT Y01 1204 A 1 HETATM 26 C CAR Y01 . . . E 5 132.463 136.197 139.044 1 45.97 ? CAR Y01 1204 A 1 HETATM 27 C CBC Y01 . . . E 5 132.888 134.848 138.488 1 45.97 ? CBC Y01 1204 A 1 HETATM 28 O OAW Y01 . . . E 5 133.783 134.24 139.455 1 45.97 ? OAW Y01 1204 A 1 HETATM 29 C CAY Y01 . . . E 5 133.586 132.939 139.951 1 45.97 ? CAY Y01 1204 A 1 HETATM 30 O OAG Y01 . . . E 5 133.112 132.163 139.149 1 45.97 ? OAG Y01 1204 A 1 HETATM 31 C CAM Y01 . . . E 5 133.92 132.452 141.411 1 45.97 ? CAM Y01 1204 A 1 HETATM 32 C CAL Y01 . . . E 5 134.208 130.939 141.545 1 45.97 ? CAL Y01 1204 A 1 HETATM 33 C CAX Y01 . . . E 5 135.738 130.52 141.676 1 45.97 ? CAX Y01 1204 A 1 HETATM 34 O OAH Y01 . . . E 5 135.994 129.348 142.017 1 45.97 ? OAH Y01 1204 A 1 HETATM 35 O OAF Y01 . . . E 5 136.591 131.398 141.426 1 45.97 ? OAF Y01 1204 A 1 HETATM 36 H HAA1 Y01 . . . E 5 125.511 143.3 128.389 1 45.97 ? HAA1 Y01 1204 A 1 HETATM 37 H HAA2 Y01 . . . E 5 125.536 144.679 129.045 1 45.97 ? HAA2 Y01 1204 A 1 HETATM 38 H HAA3 Y01 . . . E 5 125.916 144.546 127.566 1 45.97 ? HAA3 Y01 1204 A 1 HETATM 39 H HBA Y01 . . . E 5 127.842 143.194 128.248 1 45.97 ? HBA Y01 1204 A 1 HETATM 40 H HAB1 Y01 . . . E 5 128.314 145.378 127.576 1 45.97 ? HAB1 Y01 1204 A 1 HETATM 41 H HAB2 Y01 . . . E 5 127.923 145.961 128.957 1 45.97 ? HAB2 Y01 1204 A 1 HETATM 42 H HAB3 Y01 . . . E 5 129.207 145.137 128.799 1 45.97 ? HAB3 Y01 1204 A 1 HETATM 43 H HAN1 Y01 . . . E 5 127.256 144.113 130.886 1 45.97 ? HAN1 Y01 1204 A 1 HETATM 44 H HAN2 Y01 . . . E 5 128.589 143.453 130.551 1 45.97 ? HAN2 Y01 1204 A 1 HETATM 45 H HAJ1 Y01 . . . E 5 126.157 141.992 130.325 1 45.97 ? HAJ1 Y01 1204 A 1 HETATM 46 H HAJ2 Y01 . . . E 5 127.556 141.36 130.21 1 45.97 ? HAJ2 Y01 1204 A 1 HETATM 47 H HAO1 Y01 . . . E 5 126.45 142.296 132.677 1 45.97 ? HAO1 Y01 1204 A 1 HETATM 48 H HAO2 Y01 . . . E 5 126.588 140.844 132.273 1 45.97 ? HAO2 Y01 1204 A 1 HETATM 49 H HBB Y01 . . . E 5 129.085 141.996 132.24 1 45.97 ? HBB Y01 1204 A 1 HETATM 50 H HAC1 Y01 . . . E 5 127.981 143.366 134.074 1 45.97 ? HAC1 Y01 1204 A 1 HETATM 51 H HAC2 Y01 . . . E 5 128.001 142.086 134.876 1 45.97 ? HAC2 Y01 1204 A 1 HETATM 52 H HAC3 Y01 . . . E 5 129.328 142.736 134.412 1 45.97 ? HAC3 Y01 1204 A 1 HETATM 53 H HBE Y01 . . . E 5 128.034 139.729 133.504 1 45.97 ? HBE Y01 1204 A 1 HETATM 54 H HAP1 Y01 . . . E 5 128.455 138.837 131.459 1 45.97 ? HAP1 Y01 1204 A 1 HETATM 55 H HAP2 Y01 . . . E 5 129.464 139.985 131.101 1 45.97 ? HAP2 Y01 1204 A 1 HETATM 56 H HAQ1 Y01 . . . E 5 131.204 138.747 131.869 1 45.97 ? HAQ1 Y01 1204 A 1 HETATM 57 H HAQ2 Y01 . . . E 5 130.314 137.566 131.804 1 45.97 ? HAQ2 Y01 1204 A 1 HETATM 58 H HBG Y01 . . . E 5 129.44 137.883 133.902 1 45.97 ? HBG Y01 1204 A 1 HETATM 59 H HBD Y01 . . . E 5 132.134 138.327 134.05 1 45.97 ? HBD Y01 1204 A 1 HETATM 60 H HAE1 Y01 . . . E 5 131.34 141.606 134.337 1 45.97 ? HAE1 Y01 1204 A 1 HETATM 61 H HAE2 Y01 . . . E 5 131.261 141.235 132.802 1 45.97 ? HAE2 Y01 1204 A 1 HETATM 62 H HAE3 Y01 . . . E 5 132.095 140.469 133.799 1 45.97 ? HAE3 Y01 1204 A 1 HETATM 63 H HAU1 Y01 . . . E 5 128.93 139.709 135.853 1 45.97 ? HAU1 Y01 1204 A 1 HETATM 64 H HAU2 Y01 . . . E 5 129.773 141.05 135.735 1 45.97 ? HAU2 Y01 1204 A 1 HETATM 65 H HAS1 Y01 . . . E 5 130.77 139.747 137.172 1 45.97 ? HAS1 Y01 1204 A 1 HETATM 66 H HAS2 Y01 . . . E 5 131.709 139.956 135.995 1 45.97 ? HAS2 Y01 1204 A 1 HETATM 67 H HBF Y01 . . . E 5 130.134 137.656 135.994 1 45.97 ? HBF Y01 1204 A 1 HETATM 68 H HAK1 Y01 . . . E 5 130.493 136.045 134.134 1 45.97 ? HAK1 Y01 1204 A 1 HETATM 69 H HAK2 Y01 . . . E 5 131.445 136.393 133.07 1 45.97 ? HAK2 Y01 1204 A 1 HETATM 70 H HAI Y01 . . . E 5 132.861 135.146 134.275 1 45.97 ? HAI Y01 1204 A 1 HETATM 71 H HAV1 Y01 . . . E 5 133.673 134.318 136.624 1 45.97 ? HAV1 Y01 1204 A 1 HETATM 72 H HAV2 Y01 . . . E 5 134.359 135.587 137.21 1 45.97 ? HAV2 Y01 1204 A 1 HETATM 73 H HBC Y01 . . . E 5 132.084 134.317 138.376 1 45.97 ? HBC Y01 1204 A 1 HETATM 74 H HAD1 Y01 . . . E 5 134.096 137.709 137.163 1 45.97 ? HAD1 Y01 1204 A 1 HETATM 75 H HAD2 Y01 . . . E 5 133.691 138.606 136.028 1 45.97 ? HAD2 Y01 1204 A 1 HETATM 76 H HAD3 Y01 . . . E 5 133.247 138.946 137.517 1 45.97 ? HAD3 Y01 1204 A 1 HETATM 77 H HAT1 Y01 . . . E 5 131.224 137.721 138.527 1 45.97 ? HAT1 Y01 1204 A 1 HETATM 78 H HAT2 Y01 . . . E 5 130.753 136.386 137.929 1 45.97 ? HAT2 Y01 1204 A 1 HETATM 79 H HAR1 Y01 . . . E 5 131.99 136.038 139.876 1 45.97 ? HAR1 Y01 1204 A 1 HETATM 80 H HAR2 Y01 . . . E 5 133.215 136.754 139.299 1 45.97 ? HAR2 Y01 1204 A 1 HETATM 81 H HAM1 Y01 . . . E 5 134.707 132.913 141.739 1 45.97 ? HAM1 Y01 1204 A 1 HETATM 82 H HAM2 Y01 . . . E 5 133.221 132.67 142.047 1 45.97 ? HAM2 Y01 1204 A 1 HETATM 83 H HAL1 Y01 . . . E 5 133.849 130.436 140.798 1 45.97 ? HAL1 Y01 1204 A 1 HETATM 84 H HAL2 Y01 . . . E 5 133.76 130.563 142.319 1 45.97 ? HAL2 Y01 1204 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 84 #