data_7N78 # _model_server_result.job_id 2IEi7g2uxRfDjDYXsCmH8g _model_server_result.datetime_utc '2024-11-21 14:40:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1206}' # _entry.id 7N78 # _exptl.entry_id 7N78 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N78 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 508 A ASP 508 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc2 A O THR 510 A THR 510 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc3 A OD1 ASP 873 A ASP 873 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 B O2 PO4 . A PO4 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 319 n n P O14 PC1 doub 320 n n P O13 PC1 sing 321 n n P O11 PC1 sing 322 n n O13 C11 PC1 sing 323 n n C11 C12 PC1 sing 324 n n C11 H111 PC1 sing 325 n n C11 H112 PC1 sing 326 n n C12 N PC1 sing 327 n n C12 H121 PC1 sing 328 n n C12 H122 PC1 sing 329 n n N C13 PC1 sing 330 n n N C14 PC1 sing 331 n n N C15 PC1 sing 332 n n C13 H131 PC1 sing 333 n n C13 H132 PC1 sing 334 n n C13 H133 PC1 sing 335 n n C14 H141 PC1 sing 336 n n C14 H142 PC1 sing 337 n n C14 H143 PC1 sing 338 n n C15 H151 PC1 sing 339 n n C15 H152 PC1 sing 340 n n C15 H153 PC1 sing 341 n n O11 C1 PC1 sing 342 n n C1 C2 PC1 sing 343 n n C1 H11 PC1 sing 344 n n C1 H12 PC1 sing 345 n n C2 O21 PC1 sing 346 n n C2 C3 PC1 sing 347 n n C2 H2 PC1 sing 348 n n O21 C21 PC1 sing 349 n n C21 O22 PC1 doub 350 n n C21 C22 PC1 sing 351 n n C22 C23 PC1 sing 352 n n C22 H221 PC1 sing 353 n n C22 H222 PC1 sing 354 n n C23 C24 PC1 sing 355 n n C23 H231 PC1 sing 356 n n C23 H232 PC1 sing 357 n n C24 C25 PC1 sing 358 n n C24 H241 PC1 sing 359 n n C24 H242 PC1 sing 360 n n C25 C26 PC1 sing 361 n n C25 H251 PC1 sing 362 n n C25 H252 PC1 sing 363 n n C26 C27 PC1 sing 364 n n C26 H261 PC1 sing 365 n n C26 H262 PC1 sing 366 n n C27 C28 PC1 sing 367 n n C27 H271 PC1 sing 368 n n C27 H272 PC1 sing 369 n n C28 C29 PC1 sing 370 n n C28 H281 PC1 sing 371 n n C28 H282 PC1 sing 372 n n C29 C2A PC1 sing 373 n n C29 H291 PC1 sing 374 n n C29 H292 PC1 sing 375 n n C2A C2B PC1 sing 376 n n C2A H2A1 PC1 sing 377 n n C2A H2A2 PC1 sing 378 n n C2B C2C PC1 sing 379 n n C2B H2B1 PC1 sing 380 n n C2B H2B2 PC1 sing 381 n n C2C C2D PC1 sing 382 n n C2C H2C1 PC1 sing 383 n n C2C H2C2 PC1 sing 384 n n C2D C2E PC1 sing 385 n n C2D H2D1 PC1 sing 386 n n C2D H2D2 PC1 sing 387 n n C2E C2F PC1 sing 388 n n C2E H2E1 PC1 sing 389 n n C2E H2E2 PC1 sing 390 n n C2F C2G PC1 sing 391 n n C2F H2F1 PC1 sing 392 n n C2F H2F2 PC1 sing 393 n n C2G C2H PC1 sing 394 n n C2G H2G1 PC1 sing 395 n n C2G H2G2 PC1 sing 396 n n C2H C2I PC1 sing 397 n n C2H H2H1 PC1 sing 398 n n C2H H2H2 PC1 sing 399 n n C2I H2I1 PC1 sing 400 n n C2I H2I2 PC1 sing 401 n n C2I H2I3 PC1 sing 402 n n C3 O31 PC1 sing 403 n n C3 H31 PC1 sing 404 n n C3 H32 PC1 sing 405 n n O31 C31 PC1 sing 406 n n C31 O32 PC1 doub 407 n n C31 C32 PC1 sing 408 n n C32 C33 PC1 sing 409 n n C32 H321 PC1 sing 410 n n C32 H322 PC1 sing 411 n n C33 C34 PC1 sing 412 n n C33 H331 PC1 sing 413 n n C33 H332 PC1 sing 414 n n C34 C35 PC1 sing 415 n n C34 H341 PC1 sing 416 n n C34 H342 PC1 sing 417 n n C35 C36 PC1 sing 418 n n C35 H351 PC1 sing 419 n n C35 H352 PC1 sing 420 n n C36 C37 PC1 sing 421 n n C36 H361 PC1 sing 422 n n C36 H362 PC1 sing 423 n n C37 C38 PC1 sing 424 n n C37 H371 PC1 sing 425 n n C37 H372 PC1 sing 426 n n C38 C39 PC1 sing 427 n n C38 H381 PC1 sing 428 n n C38 H382 PC1 sing 429 n n C39 C3A PC1 sing 430 n n C39 H391 PC1 sing 431 n n C39 H392 PC1 sing 432 n n C3A C3B PC1 sing 433 n n C3A H3A1 PC1 sing 434 n n C3A H3A2 PC1 sing 435 n n C3B C3C PC1 sing 436 n n C3B H3B1 PC1 sing 437 n n C3B H3B2 PC1 sing 438 n n C3C C3D PC1 sing 439 n n C3C H3C1 PC1 sing 440 n n C3C H3C2 PC1 sing 441 n n C3D C3E PC1 sing 442 n n C3D H3D1 PC1 sing 443 n n C3D H3D2 PC1 sing 444 n n C3E C3F PC1 sing 445 n n C3E H3E1 PC1 sing 446 n n C3E H3E2 PC1 sing 447 n n C3F C3G PC1 sing 448 n n C3F H3F1 PC1 sing 449 n n C3F H3F2 PC1 sing 450 n n C3G C3H PC1 sing 451 n n C3G H3G1 PC1 sing 452 n n C3G H3G2 PC1 sing 453 n n C3H C3I PC1 sing 454 n n C3H H3H1 PC1 sing 455 n n C3H H3H2 PC1 sing 456 n n C3I H3I1 PC1 sing 457 n n C3I H3I2 PC1 sing 458 n n C3I H3I3 PC1 sing 459 n n # _atom_sites.entry_id 7N78 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1201 1201 PO4 PO4 . C 3 MG A 1 1202 1202 MG MG . D 4 SPM A 1 1203 1301 SPM SPM . E 5 Y01 A 1 1204 1401 Y01 Y01 . F 5 Y01 A 1 1205 1402 Y01 Y01 . G 6 PC1 A 1 1206 1403 PC1 PC1 . H 7 LMT A 1 1207 1404 LMT LMT . I 7 LMT A 1 1208 1405 LMT LMT . J 7 LMT A 1 1209 1406 LMT LMT . K 6 PC1 A 1 1210 1407 PC1 PC1 . L 5 Y01 A 1 1211 1408 Y01 Y01 . M 8 HOH A 1 1301 1306 HOH HOH . M 8 HOH A 2 1302 1303 HOH HOH . M 8 HOH A 3 1303 1302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . G 6 141.5 147.23 150.569 1 49.21 ? O12 PC1 1206 A 1 HETATM 2 P P PC1 . . . G 6 140.428 146.51 151.351 1 49.21 ? P PC1 1206 A 1 HETATM 3 O O14 PC1 . . . G 6 139.305 147.293 151.984 1 49.21 ? O14 PC1 1206 A 1 HETATM 4 O O13 PC1 . . . G 6 141.132 145.626 152.497 1 49.21 ? O13 PC1 1206 A 1 HETATM 5 O O11 PC1 . . . G 6 139.779 145.393 150.394 1 49.21 ? O11 PC1 1206 A 1 HETATM 6 C C1 PC1 . . . G 6 138.642 144.641 150.807 1 49.21 ? C1 PC1 1206 A 1 HETATM 7 C C2 PC1 . . . G 6 137.984 144.045 149.569 1 49.21 ? C2 PC1 1206 A 1 HETATM 8 O O21 PC1 . . . G 6 138.137 144.994 148.508 1 49.21 ? O21 PC1 1206 A 1 HETATM 9 C C21 PC1 . . . G 6 137.303 144.759 147.34 1 49.21 ? C21 PC1 1206 A 1 HETATM 10 O O22 PC1 . . . G 6 136.125 145.071 147.396 1 49.21 ? O22 PC1 1206 A 1 HETATM 11 C C22 PC1 . . . G 6 137.893 144.166 146.082 1 49.21 ? C22 PC1 1206 A 1 HETATM 12 C C23 PC1 . . . G 6 136.861 144.138 144.959 1 49.21 ? C23 PC1 1206 A 1 HETATM 13 C C24 PC1 . . . G 6 137.111 142.959 144.032 1 49.21 ? C24 PC1 1206 A 1 HETATM 14 C C25 PC1 . . . G 6 136.411 143.147 142.692 1 49.21 ? C25 PC1 1206 A 1 HETATM 15 C C26 PC1 . . . G 6 137.296 143.854 141.675 1 49.21 ? C26 PC1 1206 A 1 HETATM 16 C C27 PC1 . . . G 6 137.001 143.339 140.274 1 49.21 ? C27 PC1 1206 A 1 HETATM 17 C C28 PC1 . . . G 6 137.586 144.265 139.221 1 49.21 ? C28 PC1 1206 A 1 HETATM 18 C C29 PC1 . . . G 6 138.534 143.512 138.3 1 49.21 ? C29 PC1 1206 A 1 HETATM 19 C C2A PC1 . . . G 6 139.043 144.425 137.193 1 49.21 ? C2A PC1 1206 A 1 HETATM 20 C C3 PC1 . . . G 6 136.526 143.726 149.887 1 49.21 ? C3 PC1 1206 A 1 HETATM 21 O O31 PC1 . . . G 6 135.942 142.957 148.835 1 49.21 ? O31 PC1 1206 A 1 HETATM 22 C C31 PC1 . . . G 6 134.557 142.522 148.912 1 49.21 ? C31 PC1 1206 A 1 HETATM 23 O O32 PC1 . . . G 6 134.263 141.572 149.619 1 49.21 ? O32 PC1 1206 A 1 HETATM 24 C C32 PC1 . . . G 6 133.503 143.277 148.14 1 49.21 ? C32 PC1 1206 A 1 HETATM 25 C C33 PC1 . . . G 6 132.754 142.35 147.195 1 49.21 ? C33 PC1 1206 A 1 HETATM 26 C C34 PC1 . . . G 6 132.069 143.165 146.106 1 49.21 ? C34 PC1 1206 A 1 HETATM 27 C C35 PC1 . . . G 6 131.09 142.31 145.315 1 49.21 ? C35 PC1 1206 A 1 HETATM 28 C C36 PC1 . . . G 6 129.973 143.162 144.725 1 49.21 ? C36 PC1 1206 A 1 HETATM 29 C C37 PC1 . . . G 6 130.528 144.241 143.808 1 49.21 ? C37 PC1 1206 A 1 HETATM 30 C C38 PC1 . . . G 6 129.524 144.575 142.711 1 49.21 ? C38 PC1 1206 A 1 HETATM 31 H H11 PC1 . . . G 6 138.947 143.845 151.489 1 49.21 ? H11 PC1 1206 A 1 HETATM 32 H H12 PC1 . . . G 6 137.935 145.289 151.329 1 49.21 ? H12 PC1 1206 A 1 HETATM 33 H H2 PC1 . . . G 6 138.502 143.11 149.311 1 49.21 ? H2 PC1 1206 A 1 HETATM 34 H H221 PC1 . . . G 6 138.239 143.15 146.286 1 49.21 ? H221 PC1 1206 A 1 HETATM 35 H H222 PC1 . . . G 6 138.755 144.759 145.771 1 49.21 ? H222 PC1 1206 A 1 HETATM 36 H H231 PC1 . . . G 6 136.913 145.069 144.391 1 49.21 ? H231 PC1 1206 A 1 HETATM 37 H H232 PC1 . . . G 6 135.855 144.053 145.374 1 49.21 ? H232 PC1 1206 A 1 HETATM 38 H H241 PC1 . . . G 6 136.739 142.047 144.504 1 49.21 ? H241 PC1 1206 A 1 HETATM 39 H H242 PC1 . . . G 6 138.185 142.836 143.879 1 49.21 ? H242 PC1 1206 A 1 HETATM 40 H H251 PC1 . . . G 6 135.5 143.732 142.842 1 49.21 ? H251 PC1 1206 A 1 HETATM 41 H H252 PC1 . . . G 6 136.118 142.177 142.29 1 49.21 ? H252 PC1 1206 A 1 HETATM 42 H H261 PC1 . . . G 6 138.349 143.683 141.907 1 49.21 ? H261 PC1 1206 A 1 HETATM 43 H H262 PC1 . . . G 6 137.111 144.929 141.716 1 49.21 ? H262 PC1 1206 A 1 HETATM 44 H H271 PC1 . . . G 6 135.921 143.262 140.135 1 49.21 ? H271 PC1 1206 A 1 HETATM 45 H H272 PC1 . . . G 6 137.426 142.339 140.156 1 49.21 ? H272 PC1 1206 A 1 HETATM 46 H H281 PC1 . . . G 6 138.126 145.079 139.709 1 49.21 ? H281 PC1 1206 A 1 HETATM 47 H H282 PC1 . . . G 6 136.777 144.703 138.633 1 49.21 ? H282 PC1 1206 A 1 HETATM 48 H H291 PC1 . . . G 6 138.016 142.656 137.861 1 49.21 ? H291 PC1 1206 A 1 HETATM 49 H H292 PC1 . . . G 6 139.38 143.133 138.877 1 49.21 ? H292 PC1 1206 A 1 HETATM 50 H H2A1 PC1 . . . G 6 140.123 144.302 137.084 1 49.21 ? H2A1 PC1 1206 A 1 HETATM 51 H H2A2 PC1 . . . G 6 138.849 145.465 137.462 1 49.21 ? H2A2 PC1 1206 A 1 HETATM 52 H H31 PC1 . . . G 6 136.468 143.169 150.824 1 49.21 ? H31 PC1 1206 A 1 HETATM 53 H H32 PC1 . . . G 6 135.967 144.656 150.012 1 49.21 ? H32 PC1 1206 A 1 HETATM 54 H H321 PC1 . . . G 6 132.799 143.734 148.838 1 49.21 ? H321 PC1 1206 A 1 HETATM 55 H H322 PC1 . . . G 6 133.971 144.078 147.564 1 49.21 ? H322 PC1 1206 A 1 HETATM 56 H H331 PC1 . . . G 6 132.006 141.785 147.756 1 49.21 ? H331 PC1 1206 A 1 HETATM 57 H H332 PC1 . . . G 6 133.449 141.639 146.744 1 49.21 ? H332 PC1 1206 A 1 HETATM 58 H H341 PC1 . . . G 6 131.538 144.006 146.558 1 49.21 ? H341 PC1 1206 A 1 HETATM 59 H H342 PC1 . . . G 6 132.825 143.571 145.43 1 49.21 ? H342 PC1 1206 A 1 HETATM 60 H H351 PC1 . . . G 6 130.661 141.547 145.968 1 49.21 ? H351 PC1 1206 A 1 HETATM 61 H H352 PC1 . . . G 6 131.623 141.801 144.509 1 49.21 ? H352 PC1 1206 A 1 HETATM 62 H H361 PC1 . . . G 6 129.41 143.631 145.535 1 49.21 ? H361 PC1 1206 A 1 HETATM 63 H H362 PC1 . . . G 6 129.287 142.524 144.165 1 49.21 ? H362 PC1 1206 A 1 HETATM 64 H H371 PC1 . . . G 6 131.463 143.897 143.36 1 49.21 ? H371 PC1 1206 A 1 HETATM 65 H H372 PC1 . . . G 6 130.743 145.14 144.389 1 49.21 ? H372 PC1 1206 A 1 HETATM 66 H H381 PC1 . . . G 6 129.663 145.608 142.389 1 49.21 ? H381 PC1 1206 A 1 HETATM 67 H H382 PC1 . . . G 6 128.51 144.477 143.104 1 49.21 ? H382 PC1 1206 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 1102 _model_server_stats.encode_time_ms 49 _model_server_stats.element_count 67 #