data_7N78
#
_model_server_result.job_id            lsRvVjqCwy1eFUfQ6sD2hA 
_model_server_result.datetime_utc      '2024-11-21 14:40:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1207}' 
#
_entry.id    7N78 
#
_exptl.entry_id    7N78 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7N78 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 H N N 
? 7 I N N 
? 7 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 508 A ASP 508 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc2 A O THR 510 A THR 510 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc3 A OD1 ASP 873 A ASP 873 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc4 B O2 PO4 . A PO4 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 194 n n 
C1B O1B LMT sing 195 n n 
C1B O5B LMT sing 196 n n 
C1B H1B LMT sing 197 n n 
C2B C3B LMT sing 198 n n 
C2B O2B LMT sing 199 n n 
C2B H2B LMT sing 200 n n 
C3B C4B LMT sing 201 n n 
C3B O3B LMT sing 202 n n 
C3B H3B LMT sing 203 n n 
C4B C5B LMT sing 204 n n 
C4B O4' LMT sing 205 n n 
C4B H4B LMT sing 206 n n 
C5B C6B LMT sing 207 n n 
C5B O5B LMT sing 208 n n 
C5B H5B LMT sing 209 n n 
C6B O6B LMT sing 210 n n 
C6B "H6'2" LMT sing 211 n n 
C6B "H6'1" LMT sing 212 n n 
O1B C4' LMT sing 213 n n 
O2B H2O1 LMT sing 214 n n 
O3B H3O1 LMT sing 215 n n 
O4' H4O1 LMT sing 216 n n 
O6B H6B LMT sing 217 n n 
C1' C2' LMT sing 218 n n 
C1' O1' LMT sing 219 n n 
C1' O5' LMT sing 220 n n 
C1' H1' LMT sing 221 n n 
C2' C3' LMT sing 222 n n 
C2' O2' LMT sing 223 n n 
C2' H2' LMT sing 224 n n 
C3' C4' LMT sing 225 n n 
C3' O3' LMT sing 226 n n 
C3' H3' LMT sing 227 n n 
C4' C5' LMT sing 228 n n 
C4' H4' LMT sing 229 n n 
C5' C6' LMT sing 230 n n 
C5' O5' LMT sing 231 n n 
C5' H5' LMT sing 232 n n 
C6' O6' LMT sing 233 n n 
C6' H6D LMT sing 234 n n 
C6' H6E LMT sing 235 n n 
O1' C1 LMT sing 236 n n 
O2' H2O2 LMT sing 237 n n 
O3' H3O2 LMT sing 238 n n 
O6' H6' LMT sing 239 n n 
C1 C2 LMT sing 240 n n 
C1 H12 LMT sing 241 n n 
C1 H11 LMT sing 242 n n 
C2 C3 LMT sing 243 n n 
C2 H22 LMT sing 244 n n 
C2 H21 LMT sing 245 n n 
C3 C4 LMT sing 246 n n 
C3 H32 LMT sing 247 n n 
C3 H31 LMT sing 248 n n 
C4 C5 LMT sing 249 n n 
C4 H42 LMT sing 250 n n 
C4 H41 LMT sing 251 n n 
C5 C6 LMT sing 252 n n 
C5 H52 LMT sing 253 n n 
C5 H51 LMT sing 254 n n 
C6 C7 LMT sing 255 n n 
C6 H62 LMT sing 256 n n 
C6 H61 LMT sing 257 n n 
C7 C8 LMT sing 258 n n 
C7 H72 LMT sing 259 n n 
C7 H71 LMT sing 260 n n 
C8 C9 LMT sing 261 n n 
C8 H82 LMT sing 262 n n 
C8 H81 LMT sing 263 n n 
C9 C10 LMT sing 264 n n 
C9 H92 LMT sing 265 n n 
C9 H91 LMT sing 266 n n 
C10 C11 LMT sing 267 n n 
C10 H102 LMT sing 268 n n 
C10 H101 LMT sing 269 n n 
C11 C12 LMT sing 270 n n 
C11 H112 LMT sing 271 n n 
C11 H111 LMT sing 272 n n 
C12 H123 LMT sing 273 n n 
C12 H122 LMT sing 274 n n 
C12 H121 LMT sing 275 n n 
#
_atom_sites.entry_id                     7N78 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 1201 1201 PO4 PO4 . 
C 3 MG A 1 1202 1202 MG MG . 
D 4 SPM A 1 1203 1301 SPM SPM . 
E 5 Y01 A 1 1204 1401 Y01 Y01 . 
F 5 Y01 A 1 1205 1402 Y01 Y01 . 
G 6 PC1 A 1 1206 1403 PC1 PC1 . 
H 7 LMT A 1 1207 1404 LMT LMT . 
I 7 LMT A 1 1208 1405 LMT LMT . 
J 7 LMT A 1 1209 1406 LMT LMT . 
K 6 PC1 A 1 1210 1407 PC1 PC1 . 
L 5 Y01 A 1 1211 1408 Y01 Y01 . 
M 8 HOH A 1 1301 1306 HOH HOH . 
M 8 HOH A 2 1302 1303 HOH HOH . 
M 8 HOH A 3 1303 1302 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1B LMT . . . H 7 123.018 151.429 119.2 1 52.03 ? O1B LMT 1207 A 1 
HETATM 2 C C1' LMT . . . H 7 121.967 148.72 122.119 1 52.03 ? C1' LMT 1207 A 1 
HETATM 3 C C2' LMT . . . H 7 120.897 148.939 121.032 1 52.03 ? C2' LMT 1207 A 1 
HETATM 4 C C3' LMT . . . H 7 121.5 149.7 119.822 1 52.03 ? C3' LMT 1207 A 1 
HETATM 5 C C4' LMT . . . H 7 122.25 150.96 120.282 1 52.03 ? C4' LMT 1207 A 1 
HETATM 6 C C5' LMT . . . H 7 123.224 150.495 121.385 1 52.03 ? C5' LMT 1207 A 1 
HETATM 7 C C6' LMT . . . H 7 124.174 151.562 121.862 1 52.03 ? C6' LMT 1207 A 1 
HETATM 8 O O1' LMT . . . H 7 121.401 148.2 123.245 1 52.03 ? O1' LMT 1207 A 1 
HETATM 9 O O2' LMT . . . H 7 120.459 147.712 120.602 1 52.03 ? O2' LMT 1207 A 1 
HETATM 10 O O3' LMT . . . H 7 120.524 150.038 118.934 1 52.03 ? O3' LMT 1207 A 1 
HETATM 11 O O5' LMT . . . H 7 122.516 149.975 122.477 1 52.03 ? O5' LMT 1207 A 1 
HETATM 12 O O6' LMT . . . H 7 123.973 151.676 123.214 1 52.03 ? O6' LMT 1207 A 1 
HETATM 13 C C1 LMT . . . H 7 122.318 147.809 124.24 1 52.03 ? C1 LMT 1207 A 1 
HETATM 14 C C2 LMT . . . H 7 122.748 146.424 123.855 1 52.03 ? C2 LMT 1207 A 1 
HETATM 15 C C3 LMT . . . H 7 123.311 145.581 124.952 1 52.03 ? C3 LMT 1207 A 1 
HETATM 16 C C4 LMT . . . H 7 124.027 144.409 124.324 1 52.03 ? C4 LMT 1207 A 1 
HETATM 17 C C5 LMT . . . H 7 125.511 144.585 124.382 1 52.03 ? C5 LMT 1207 A 1 
HETATM 18 C C6 LMT . . . H 7 126.232 143.278 124.357 1 52.03 ? C6 LMT 1207 A 1 
HETATM 19 C C7 LMT . . . H 7 127.714 143.517 124.382 1 52.03 ? C7 LMT 1207 A 1 
HETATM 20 C C8 LMT . . . H 7 128.411 142.271 124.82 1 52.03 ? C8 LMT 1207 A 1 
HETATM 21 C C9 LMT . . . H 7 129.481 141.801 123.887 1 52.03 ? C9 LMT 1207 A 1 
HETATM 22 C C10 LMT . . . H 7 130.583 141.205 124.718 1 52.03 ? C10 LMT 1207 A 1 
HETATM 23 C C11 LMT . . . H 7 131.703 140.714 123.858 1 52.03 ? C11 LMT 1207 A 1 
HETATM 24 C C12 LMT . . . H 7 132.773 140.056 124.662 1 52.03 ? C12 LMT 1207 A 1 
HETATM 25 H H1' LMT . . . H 7 122.662 148.159 121.742 1 52.03 ? H1' LMT 1207 A 1 
HETATM 26 H H2' LMT . . . H 7 120.211 149.506 121.419 1 52.03 ? H2' LMT 1207 A 1 
HETATM 27 H H3' LMT . . . H 7 122.176 149.113 119.448 1 52.03 ? H3' LMT 1207 A 1 
HETATM 28 H H4' LMT . . . H 7 121.621 151.609 120.635 1 52.03 ? H4' LMT 1207 A 1 
HETATM 29 H H5' LMT . . . H 7 123.776 149.818 120.963 1 52.03 ? H5' LMT 1207 A 1 
HETATM 30 H H6D LMT . . . H 7 125.077 151.298 121.63 1 52.03 ? H6D LMT 1207 A 1 
HETATM 31 H H6E LMT . . . H 7 124.05 152.371 121.341 1 52.03 ? H6E LMT 1207 A 1 
HETATM 32 H H2O2 LMT . . . H 7 120.328 147.784 119.766 1 52.03 ? H2O2 LMT 1207 A 1 
HETATM 33 H H3O2 LMT . . . H 7 120.357 149.325 118.503 1 52.03 ? H3O2 LMT 1207 A 1 
HETATM 34 H H6' LMT . . . H 7 124.616 152.151 123.503 1 52.03 ? H6' LMT 1207 A 1 
HETATM 35 H H12 LMT . . . H 7 121.96 147.817 125.141 1 52.03 ? H12 LMT 1207 A 1 
HETATM 36 H H11 LMT . . . H 7 123.065 148.426 124.284 1 52.03 ? H11 LMT 1207 A 1 
HETATM 37 H H22 LMT . . . H 7 123.413 146.496 123.153 1 52.03 ? H22 LMT 1207 A 1 
HETATM 38 H H21 LMT . . . H 7 121.992 145.963 123.459 1 52.03 ? H21 LMT 1207 A 1 
HETATM 39 H H32 LMT . . . H 7 122.62 145.265 125.555 1 52.03 ? H32 LMT 1207 A 1 
HETATM 40 H H31 LMT . . . H 7 123.921 146.087 125.508 1 52.03 ? H31 LMT 1207 A 1 
HETATM 41 H H42 LMT . . . H 7 123.73 144.291 123.408 1 52.03 ? H42 LMT 1207 A 1 
HETATM 42 H H41 LMT . . . H 7 123.772 143.587 124.772 1 52.03 ? H41 LMT 1207 A 1 
HETATM 43 H H52 LMT . . . H 7 125.754 145.074 125.183 1 52.03 ? H52 LMT 1207 A 1 
HETATM 44 H H51 LMT . . . H 7 125.797 145.138 123.64 1 52.03 ? H51 LMT 1207 A 1 
HETATM 45 H H62 LMT . . . H 7 125.985 142.765 123.573 1 52.03 ? H62 LMT 1207 A 1 
HETATM 46 H H61 LMT . . . H 7 125.962 142.727 125.108 1 52.03 ? H61 LMT 1207 A 1 
HETATM 47 H H72 LMT . . . H 7 127.924 144.255 124.976 1 52.03 ? H72 LMT 1207 A 1 
HETATM 48 H H71 LMT . . . H 7 128.021 143.803 123.509 1 52.03 ? H71 LMT 1207 A 1 
HETATM 49 H H82 LMT . . . H 7 127.764 141.561 124.937 1 52.03 ? H82 LMT 1207 A 1 
HETATM 50 H H81 LMT . . . H 7 128.793 142.408 125.7 1 52.03 ? H81 LMT 1207 A 1 
HETATM 51 H H92 LMT . . . H 7 129.821 142.521 123.336 1 52.03 ? H92 LMT 1207 A 1 
HETATM 52 H H91 LMT . . . H 7 129.129 141.151 123.259 1 52.03 ? H91 LMT 1207 A 1 
HETATM 53 H H102 LMT . . . H 7 130.236 140.48 125.262 1 52.03 ? H102 LMT 1207 A 1 
HETATM 54 H H101 LMT . . . H 7 130.908 141.862 125.352 1 52.03 ? H101 LMT 1207 A 1 
HETATM 55 H H112 LMT . . . H 7 132.071 141.463 123.364 1 52.03 ? H112 LMT 1207 A 1 
HETATM 56 H H111 LMT . . . H 7 131.356 140.095 123.197 1 52.03 ? H111 LMT 1207 A 1 
HETATM 57 H H123 LMT . . . H 7 133.627 140.079 124.203 1 52.03 ? H123 LMT 1207 A 1 
HETATM 58 H H122 LMT . . . H 7 132.567 139.124 124.838 1 52.03 ? H122 LMT 1207 A 1 
HETATM 59 H H121 LMT . . . H 7 132.883 140.507 125.514 1 52.03 ? H121 LMT 1207 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           59 
#