data_7N78 # _model_server_result.job_id YCSzbelP7yvMcDgnfddY-A _model_server_result.datetime_utc '2024-11-21 14:10:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1208}' # _entry.id 7N78 # _exptl.entry_id 7N78 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N78 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N ? 7 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 508 A ASP 508 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc2 A O THR 510 A THR 510 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc3 A OD1 ASP 873 A ASP 873 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 B O2 PO4 . A PO4 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 194 n n C1B O1B LMT sing 195 n n C1B O5B LMT sing 196 n n C1B H1B LMT sing 197 n n C2B C3B LMT sing 198 n n C2B O2B LMT sing 199 n n C2B H2B LMT sing 200 n n C3B C4B LMT sing 201 n n C3B O3B LMT sing 202 n n C3B H3B LMT sing 203 n n C4B C5B LMT sing 204 n n C4B O4' LMT sing 205 n n C4B H4B LMT sing 206 n n C5B C6B LMT sing 207 n n C5B O5B LMT sing 208 n n C5B H5B LMT sing 209 n n C6B O6B LMT sing 210 n n C6B "H6'2" LMT sing 211 n n C6B "H6'1" LMT sing 212 n n O1B C4' LMT sing 213 n n O2B H2O1 LMT sing 214 n n O3B H3O1 LMT sing 215 n n O4' H4O1 LMT sing 216 n n O6B H6B LMT sing 217 n n C1' C2' LMT sing 218 n n C1' O1' LMT sing 219 n n C1' O5' LMT sing 220 n n C1' H1' LMT sing 221 n n C2' C3' LMT sing 222 n n C2' O2' LMT sing 223 n n C2' H2' LMT sing 224 n n C3' C4' LMT sing 225 n n C3' O3' LMT sing 226 n n C3' H3' LMT sing 227 n n C4' C5' LMT sing 228 n n C4' H4' LMT sing 229 n n C5' C6' LMT sing 230 n n C5' O5' LMT sing 231 n n C5' H5' LMT sing 232 n n C6' O6' LMT sing 233 n n C6' H6D LMT sing 234 n n C6' H6E LMT sing 235 n n O1' C1 LMT sing 236 n n O2' H2O2 LMT sing 237 n n O3' H3O2 LMT sing 238 n n O6' H6' LMT sing 239 n n C1 C2 LMT sing 240 n n C1 H12 LMT sing 241 n n C1 H11 LMT sing 242 n n C2 C3 LMT sing 243 n n C2 H22 LMT sing 244 n n C2 H21 LMT sing 245 n n C3 C4 LMT sing 246 n n C3 H32 LMT sing 247 n n C3 H31 LMT sing 248 n n C4 C5 LMT sing 249 n n C4 H42 LMT sing 250 n n C4 H41 LMT sing 251 n n C5 C6 LMT sing 252 n n C5 H52 LMT sing 253 n n C5 H51 LMT sing 254 n n C6 C7 LMT sing 255 n n C6 H62 LMT sing 256 n n C6 H61 LMT sing 257 n n C7 C8 LMT sing 258 n n C7 H72 LMT sing 259 n n C7 H71 LMT sing 260 n n C8 C9 LMT sing 261 n n C8 H82 LMT sing 262 n n C8 H81 LMT sing 263 n n C9 C10 LMT sing 264 n n C9 H92 LMT sing 265 n n C9 H91 LMT sing 266 n n C10 C11 LMT sing 267 n n C10 H102 LMT sing 268 n n C10 H101 LMT sing 269 n n C11 C12 LMT sing 270 n n C11 H112 LMT sing 271 n n C11 H111 LMT sing 272 n n C12 H123 LMT sing 273 n n C12 H122 LMT sing 274 n n C12 H121 LMT sing 275 n n # _atom_sites.entry_id 7N78 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1201 1201 PO4 PO4 . C 3 MG A 1 1202 1202 MG MG . D 4 SPM A 1 1203 1301 SPM SPM . E 5 Y01 A 1 1204 1401 Y01 Y01 . F 5 Y01 A 1 1205 1402 Y01 Y01 . G 6 PC1 A 1 1206 1403 PC1 PC1 . H 7 LMT A 1 1207 1404 LMT LMT . I 7 LMT A 1 1208 1405 LMT LMT . J 7 LMT A 1 1209 1406 LMT LMT . K 6 PC1 A 1 1210 1407 PC1 PC1 . L 5 Y01 A 1 1211 1408 Y01 Y01 . M 8 HOH A 1 1301 1306 HOH HOH . M 8 HOH A 2 1302 1303 HOH HOH . M 8 HOH A 3 1303 1302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1' LMT . . . I 7 123.326 152.02 125.656 1 50.62 ? O1' LMT 1208 A 1 HETATM 2 C C1 LMT . . . I 7 124.436 151.322 126.168 1 50.62 ? C1 LMT 1208 A 1 HETATM 3 C C2 LMT . . . I 7 123.858 150.361 127.165 1 50.62 ? C2 LMT 1208 A 1 HETATM 4 C C3 LMT . . . I 7 124.469 148.999 127.199 1 50.62 ? C3 LMT 1208 A 1 HETATM 5 C C4 LMT . . . I 7 123.946 148.293 128.422 1 50.62 ? C4 LMT 1208 A 1 HETATM 6 C C5 LMT . . . I 7 124.95 148.35 129.523 1 50.62 ? C5 LMT 1208 A 1 HETATM 7 C C6 LMT . . . I 7 124.526 147.543 130.703 1 50.62 ? C6 LMT 1208 A 1 HETATM 8 C C7 LMT . . . I 7 125.645 147.46 131.698 1 50.62 ? C7 LMT 1208 A 1 HETATM 9 C C8 LMT . . . I 7 125.087 146.98 132.992 1 50.62 ? C8 LMT 1208 A 1 HETATM 10 C C9 LMT . . . I 7 126.069 146.27 133.877 1 50.62 ? C9 LMT 1208 A 1 HETATM 11 C C10 LMT . . . I 7 126.646 147.252 134.872 1 50.62 ? C10 LMT 1208 A 1 HETATM 12 C C11 LMT . . . I 7 126.777 146.65 136.239 1 50.62 ? C11 LMT 1208 A 1 HETATM 13 C C12 LMT . . . I 7 125.931 147.36 137.242 1 50.62 ? C12 LMT 1208 A 1 HETATM 14 H H12 LMT . . . I 7 125.108 151.883 126.585 1 50.62 ? H12 LMT 1208 A 1 HETATM 15 H H11 LMT . . . I 7 124.918 150.87 125.458 1 50.62 ? H11 LMT 1208 A 1 HETATM 16 H H22 LMT . . . I 7 122.91 150.265 126.981 1 50.62 ? H22 LMT 1208 A 1 HETATM 17 H H21 LMT . . . I 7 123.918 150.756 128.048 1 50.62 ? H21 LMT 1208 A 1 HETATM 18 H H32 LMT . . . I 7 125.437 149.034 127.218 1 50.62 ? H32 LMT 1208 A 1 HETATM 19 H H31 LMT . . . I 7 124.245 148.488 126.406 1 50.62 ? H31 LMT 1208 A 1 HETATM 20 H H42 LMT . . . I 7 123.721 147.376 128.205 1 50.62 ? H42 LMT 1208 A 1 HETATM 21 H H41 LMT . . . I 7 123.111 148.695 128.709 1 50.62 ? H41 LMT 1208 A 1 HETATM 22 H H52 LMT . . . I 7 125.09 149.27 129.788 1 50.62 ? H52 LMT 1208 A 1 HETATM 23 H H51 LMT . . . I 7 125.807 148.036 129.195 1 50.62 ? H51 LMT 1208 A 1 HETATM 24 H H62 LMT . . . I 7 124.251 146.655 130.429 1 50.62 ? H62 LMT 1208 A 1 HETATM 25 H H61 LMT . . . I 7 123.737 147.928 131.115 1 50.62 ? H61 LMT 1208 A 1 HETATM 26 H H72 LMT . . . I 7 126.071 148.325 131.802 1 50.62 ? H72 LMT 1208 A 1 HETATM 27 H H71 LMT . . . I 7 126.342 146.868 131.373 1 50.62 ? H71 LMT 1208 A 1 HETATM 28 H H82 LMT . . . I 7 124.345 146.383 132.811 1 50.62 ? H82 LMT 1208 A 1 HETATM 29 H H81 LMT . . . I 7 124.688 147.721 133.469 1 50.62 ? H81 LMT 1208 A 1 HETATM 30 H H92 LMT . . . I 7 126.779 145.859 133.359 1 50.62 ? H92 LMT 1208 A 1 HETATM 31 H H91 LMT . . . I 7 125.639 145.527 134.326 1 50.62 ? H91 LMT 1208 A 1 HETATM 32 H H102 LMT . . . I 7 126.107 148.052 134.917 1 50.62 ? H102 LMT 1208 A 1 HETATM 33 H H101 LMT . . . I 7 127.511 147.559 134.557 1 50.62 ? H101 LMT 1208 A 1 HETATM 34 H H112 LMT . . . I 7 127.704 146.682 136.508 1 50.62 ? H112 LMT 1208 A 1 HETATM 35 H H111 LMT . . . I 7 126.54 145.712 136.213 1 50.62 ? H111 LMT 1208 A 1 HETATM 36 H H123 LMT . . . I 7 126.016 146.963 138.124 1 50.62 ? H123 LMT 1208 A 1 HETATM 37 H H122 LMT . . . I 7 124.992 147.332 137.004 1 50.62 ? H122 LMT 1208 A 1 HETATM 38 H H121 LMT . . . I 7 126.197 148.29 137.313 1 50.62 ? H121 LMT 1208 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #