data_7N78
#
_model_server_result.job_id            0WFR7zQkc5xz4q9YVliR0A 
_model_server_result.datetime_utc      '2024-11-21 13:36:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1209}' 
#
_entry.id    7N78 
#
_exptl.entry_id    7N78 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7N78 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 H N N 
? 7 I N N 
? 7 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 508 A ASP 508 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc2 A O THR 510 A THR 510 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc3 A OD1 ASP 873 A ASP 873 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc4 B O2 PO4 . A PO4 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 194 n n 
C1B O1B LMT sing 195 n n 
C1B O5B LMT sing 196 n n 
C1B H1B LMT sing 197 n n 
C2B C3B LMT sing 198 n n 
C2B O2B LMT sing 199 n n 
C2B H2B LMT sing 200 n n 
C3B C4B LMT sing 201 n n 
C3B O3B LMT sing 202 n n 
C3B H3B LMT sing 203 n n 
C4B C5B LMT sing 204 n n 
C4B O4' LMT sing 205 n n 
C4B H4B LMT sing 206 n n 
C5B C6B LMT sing 207 n n 
C5B O5B LMT sing 208 n n 
C5B H5B LMT sing 209 n n 
C6B O6B LMT sing 210 n n 
C6B "H6'2" LMT sing 211 n n 
C6B "H6'1" LMT sing 212 n n 
O1B C4' LMT sing 213 n n 
O2B H2O1 LMT sing 214 n n 
O3B H3O1 LMT sing 215 n n 
O4' H4O1 LMT sing 216 n n 
O6B H6B LMT sing 217 n n 
C1' C2' LMT sing 218 n n 
C1' O1' LMT sing 219 n n 
C1' O5' LMT sing 220 n n 
C1' H1' LMT sing 221 n n 
C2' C3' LMT sing 222 n n 
C2' O2' LMT sing 223 n n 
C2' H2' LMT sing 224 n n 
C3' C4' LMT sing 225 n n 
C3' O3' LMT sing 226 n n 
C3' H3' LMT sing 227 n n 
C4' C5' LMT sing 228 n n 
C4' H4' LMT sing 229 n n 
C5' C6' LMT sing 230 n n 
C5' O5' LMT sing 231 n n 
C5' H5' LMT sing 232 n n 
C6' O6' LMT sing 233 n n 
C6' H6D LMT sing 234 n n 
C6' H6E LMT sing 235 n n 
O1' C1 LMT sing 236 n n 
O2' H2O2 LMT sing 237 n n 
O3' H3O2 LMT sing 238 n n 
O6' H6' LMT sing 239 n n 
C1 C2 LMT sing 240 n n 
C1 H12 LMT sing 241 n n 
C1 H11 LMT sing 242 n n 
C2 C3 LMT sing 243 n n 
C2 H22 LMT sing 244 n n 
C2 H21 LMT sing 245 n n 
C3 C4 LMT sing 246 n n 
C3 H32 LMT sing 247 n n 
C3 H31 LMT sing 248 n n 
C4 C5 LMT sing 249 n n 
C4 H42 LMT sing 250 n n 
C4 H41 LMT sing 251 n n 
C5 C6 LMT sing 252 n n 
C5 H52 LMT sing 253 n n 
C5 H51 LMT sing 254 n n 
C6 C7 LMT sing 255 n n 
C6 H62 LMT sing 256 n n 
C6 H61 LMT sing 257 n n 
C7 C8 LMT sing 258 n n 
C7 H72 LMT sing 259 n n 
C7 H71 LMT sing 260 n n 
C8 C9 LMT sing 261 n n 
C8 H82 LMT sing 262 n n 
C8 H81 LMT sing 263 n n 
C9 C10 LMT sing 264 n n 
C9 H92 LMT sing 265 n n 
C9 H91 LMT sing 266 n n 
C10 C11 LMT sing 267 n n 
C10 H102 LMT sing 268 n n 
C10 H101 LMT sing 269 n n 
C11 C12 LMT sing 270 n n 
C11 H112 LMT sing 271 n n 
C11 H111 LMT sing 272 n n 
C12 H123 LMT sing 273 n n 
C12 H122 LMT sing 274 n n 
C12 H121 LMT sing 275 n n 
#
_atom_sites.entry_id                     7N78 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 1201 1201 PO4 PO4 . 
C 3 MG A 1 1202 1202 MG MG . 
D 4 SPM A 1 1203 1301 SPM SPM . 
E 5 Y01 A 1 1204 1401 Y01 Y01 . 
F 5 Y01 A 1 1205 1402 Y01 Y01 . 
G 6 PC1 A 1 1206 1403 PC1 PC1 . 
H 7 LMT A 1 1207 1404 LMT LMT . 
I 7 LMT A 1 1208 1405 LMT LMT . 
J 7 LMT A 1 1209 1406 LMT LMT . 
K 6 PC1 A 1 1210 1407 PC1 PC1 . 
L 5 Y01 A 1 1211 1408 Y01 Y01 . 
M 8 HOH A 1 1301 1306 HOH HOH . 
M 8 HOH A 2 1302 1303 HOH HOH . 
M 8 HOH A 3 1303 1302 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1' LMT . . . J 7 134.801 121.622 135.831 1 45.12 ? O1' LMT 1209 A 1 
HETATM 2 C C1 LMT . . . J 7 134.452 122.847 136.43 1 45.12 ? C1 LMT 1209 A 1 
HETATM 3 C C2 LMT . . . J 7 133.917 123.683 135.306 1 45.12 ? C2 LMT 1209 A 1 
HETATM 4 C C3 LMT . . . J 7 133.388 125.025 135.68 1 45.12 ? C3 LMT 1209 A 1 
HETATM 5 C C4 LMT . . . J 7 133.104 125.781 134.411 1 45.12 ? C4 LMT 1209 A 1 
HETATM 6 C C5 LMT . . . J 7 132.699 127.178 134.738 1 45.12 ? C5 LMT 1209 A 1 
HETATM 7 C C6 LMT . . . J 7 132.404 127.985 133.519 1 45.12 ? C6 LMT 1209 A 1 
HETATM 8 C C7 LMT . . . J 7 132.667 129.435 133.798 1 45.12 ? C7 LMT 1209 A 1 
HETATM 9 C C8 LMT . . . J 7 132.409 130.215 132.557 1 45.12 ? C8 LMT 1209 A 1 
HETATM 10 C C9 LMT . . . J 7 132.482 131.696 132.733 1 45.12 ? C9 LMT 1209 A 1 
HETATM 11 C C10 LMT . . . J 7 131.978 132.321 131.462 1 45.12 ? C10 LMT 1209 A 1 
HETATM 12 C C11 LMT . . . J 7 132.322 133.774 131.391 1 45.12 ? C11 LMT 1209 A 1 
HETATM 13 C C12 LMT . . . J 7 131.691 134.439 130.214 1 45.12 ? C12 LMT 1209 A 1 
HETATM 14 H H12 LMT . . . J 7 135.186 123.3 136.875 1 45.12 ? H12 LMT 1209 A 1 
HETATM 15 H H11 LMT . . . J 7 133.799 122.714 137.135 1 45.12 ? H11 LMT 1209 A 1 
HETATM 16 H H22 LMT . . . J 7 133.21 123.187 134.867 1 45.12 ? H22 LMT 1209 A 1 
HETATM 17 H H21 LMT . . . J 7 134.616 123.792 134.642 1 45.12 ? H21 LMT 1209 A 1 
HETATM 18 H H32 LMT . . . J 7 134.011 125.521 136.233 1 45.12 ? H32 LMT 1209 A 1 
HETATM 19 H H31 LMT . . . J 7 132.577 124.953 136.207 1 45.12 ? H31 LMT 1209 A 1 
HETATM 20 H H42 LMT . . . J 7 132.416 125.327 133.898 1 45.12 ? H42 LMT 1209 A 1 
HETATM 21 H H41 LMT . . . J 7 133.887 125.783 133.838 1 45.12 ? H41 LMT 1209 A 1 
HETATM 22 H H52 LMT . . . J 7 133.399 127.605 135.255 1 45.12 ? H52 LMT 1209 A 1 
HETATM 23 H H51 LMT . . . J 7 131.922 127.157 135.318 1 45.12 ? H51 LMT 1209 A 1 
HETATM 24 H H62 LMT . . . J 7 131.486 127.856 133.236 1 45.12 ? H62 LMT 1209 A 1 
HETATM 25 H H61 LMT . . . J 7 132.939 127.682 132.769 1 45.12 ? H61 LMT 1209 A 1 
HETATM 26 H H72 LMT . . . J 7 133.58 129.56 134.1 1 45.12 ? H72 LMT 1209 A 1 
HETATM 27 H H71 LMT . . . J 7 132.111 129.744 134.529 1 45.12 ? H71 LMT 1209 A 1 
HETATM 28 H H82 LMT . . . J 7 131.536 129.98 132.207 1 45.12 ? H82 LMT 1209 A 1 
HETATM 29 H H81 LMT . . . J 7 133.036 129.945 131.868 1 45.12 ? H81 LMT 1209 A 1 
HETATM 30 H H92 LMT . . . J 7 133.386 131.991 132.927 1 45.12 ? H92 LMT 1209 A 1 
HETATM 31 H H91 LMT . . . J 7 131.956 131.981 133.496 1 45.12 ? H91 LMT 1209 A 1 
HETATM 32 H H102 LMT . . . J 7 131.018 132.202 131.392 1 45.12 ? H102 LMT 1209 A 1 
HETATM 33 H H101 LMT . . . J 7 132.344 131.848 130.698 1 45.12 ? H101 LMT 1209 A 1 
HETATM 34 H H112 LMT . . . J 7 133.286 133.866 131.346 1 45.12 ? H112 LMT 1209 A 1 
HETATM 35 H H111 LMT . . . J 7 132.043 134.213 132.209 1 45.12 ? H111 LMT 1209 A 1 
HETATM 36 H H123 LMT . . . J 7 131.997 135.354 130.118 1 45.12 ? H123 LMT 1209 A 1 
HETATM 37 H H122 LMT . . . J 7 131.898 133.977 129.387 1 45.12 ? H122 LMT 1209 A 1 
HETATM 38 H H121 LMT . . . J 7 130.727 134.461 130.315 1 45.12 ? H121 LMT 1209 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           38 
#