data_7N78 # _model_server_result.job_id gGqv_uxvuRs5CCCYv7wL8Q _model_server_result.datetime_utc '2024-11-21 14:20:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1210}' # _entry.id 7N78 # _exptl.entry_id 7N78 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N78 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 508 A ASP 508 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc2 A O THR 510 A THR 510 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc3 A OD1 ASP 873 A ASP 873 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 B O2 PO4 . A PO4 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 319 n n P O14 PC1 doub 320 n n P O13 PC1 sing 321 n n P O11 PC1 sing 322 n n O13 C11 PC1 sing 323 n n C11 C12 PC1 sing 324 n n C11 H111 PC1 sing 325 n n C11 H112 PC1 sing 326 n n C12 N PC1 sing 327 n n C12 H121 PC1 sing 328 n n C12 H122 PC1 sing 329 n n N C13 PC1 sing 330 n n N C14 PC1 sing 331 n n N C15 PC1 sing 332 n n C13 H131 PC1 sing 333 n n C13 H132 PC1 sing 334 n n C13 H133 PC1 sing 335 n n C14 H141 PC1 sing 336 n n C14 H142 PC1 sing 337 n n C14 H143 PC1 sing 338 n n C15 H151 PC1 sing 339 n n C15 H152 PC1 sing 340 n n C15 H153 PC1 sing 341 n n O11 C1 PC1 sing 342 n n C1 C2 PC1 sing 343 n n C1 H11 PC1 sing 344 n n C1 H12 PC1 sing 345 n n C2 O21 PC1 sing 346 n n C2 C3 PC1 sing 347 n n C2 H2 PC1 sing 348 n n O21 C21 PC1 sing 349 n n C21 O22 PC1 doub 350 n n C21 C22 PC1 sing 351 n n C22 C23 PC1 sing 352 n n C22 H221 PC1 sing 353 n n C22 H222 PC1 sing 354 n n C23 C24 PC1 sing 355 n n C23 H231 PC1 sing 356 n n C23 H232 PC1 sing 357 n n C24 C25 PC1 sing 358 n n C24 H241 PC1 sing 359 n n C24 H242 PC1 sing 360 n n C25 C26 PC1 sing 361 n n C25 H251 PC1 sing 362 n n C25 H252 PC1 sing 363 n n C26 C27 PC1 sing 364 n n C26 H261 PC1 sing 365 n n C26 H262 PC1 sing 366 n n C27 C28 PC1 sing 367 n n C27 H271 PC1 sing 368 n n C27 H272 PC1 sing 369 n n C28 C29 PC1 sing 370 n n C28 H281 PC1 sing 371 n n C28 H282 PC1 sing 372 n n C29 C2A PC1 sing 373 n n C29 H291 PC1 sing 374 n n C29 H292 PC1 sing 375 n n C2A C2B PC1 sing 376 n n C2A H2A1 PC1 sing 377 n n C2A H2A2 PC1 sing 378 n n C2B C2C PC1 sing 379 n n C2B H2B1 PC1 sing 380 n n C2B H2B2 PC1 sing 381 n n C2C C2D PC1 sing 382 n n C2C H2C1 PC1 sing 383 n n C2C H2C2 PC1 sing 384 n n C2D C2E PC1 sing 385 n n C2D H2D1 PC1 sing 386 n n C2D H2D2 PC1 sing 387 n n C2E C2F PC1 sing 388 n n C2E H2E1 PC1 sing 389 n n C2E H2E2 PC1 sing 390 n n C2F C2G PC1 sing 391 n n C2F H2F1 PC1 sing 392 n n C2F H2F2 PC1 sing 393 n n C2G C2H PC1 sing 394 n n C2G H2G1 PC1 sing 395 n n C2G H2G2 PC1 sing 396 n n C2H C2I PC1 sing 397 n n C2H H2H1 PC1 sing 398 n n C2H H2H2 PC1 sing 399 n n C2I H2I1 PC1 sing 400 n n C2I H2I2 PC1 sing 401 n n C2I H2I3 PC1 sing 402 n n C3 O31 PC1 sing 403 n n C3 H31 PC1 sing 404 n n C3 H32 PC1 sing 405 n n O31 C31 PC1 sing 406 n n C31 O32 PC1 doub 407 n n C31 C32 PC1 sing 408 n n C32 C33 PC1 sing 409 n n C32 H321 PC1 sing 410 n n C32 H322 PC1 sing 411 n n C33 C34 PC1 sing 412 n n C33 H331 PC1 sing 413 n n C33 H332 PC1 sing 414 n n C34 C35 PC1 sing 415 n n C34 H341 PC1 sing 416 n n C34 H342 PC1 sing 417 n n C35 C36 PC1 sing 418 n n C35 H351 PC1 sing 419 n n C35 H352 PC1 sing 420 n n C36 C37 PC1 sing 421 n n C36 H361 PC1 sing 422 n n C36 H362 PC1 sing 423 n n C37 C38 PC1 sing 424 n n C37 H371 PC1 sing 425 n n C37 H372 PC1 sing 426 n n C38 C39 PC1 sing 427 n n C38 H381 PC1 sing 428 n n C38 H382 PC1 sing 429 n n C39 C3A PC1 sing 430 n n C39 H391 PC1 sing 431 n n C39 H392 PC1 sing 432 n n C3A C3B PC1 sing 433 n n C3A H3A1 PC1 sing 434 n n C3A H3A2 PC1 sing 435 n n C3B C3C PC1 sing 436 n n C3B H3B1 PC1 sing 437 n n C3B H3B2 PC1 sing 438 n n C3C C3D PC1 sing 439 n n C3C H3C1 PC1 sing 440 n n C3C H3C2 PC1 sing 441 n n C3D C3E PC1 sing 442 n n C3D H3D1 PC1 sing 443 n n C3D H3D2 PC1 sing 444 n n C3E C3F PC1 sing 445 n n C3E H3E1 PC1 sing 446 n n C3E H3E2 PC1 sing 447 n n C3F C3G PC1 sing 448 n n C3F H3F1 PC1 sing 449 n n C3F H3F2 PC1 sing 450 n n C3G C3H PC1 sing 451 n n C3G H3G1 PC1 sing 452 n n C3G H3G2 PC1 sing 453 n n C3H C3I PC1 sing 454 n n C3H H3H1 PC1 sing 455 n n C3H H3H2 PC1 sing 456 n n C3I H3I1 PC1 sing 457 n n C3I H3I2 PC1 sing 458 n n C3I H3I3 PC1 sing 459 n n # _atom_sites.entry_id 7N78 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1201 1201 PO4 PO4 . C 3 MG A 1 1202 1202 MG MG . D 4 SPM A 1 1203 1301 SPM SPM . E 5 Y01 A 1 1204 1401 Y01 Y01 . F 5 Y01 A 1 1205 1402 Y01 Y01 . G 6 PC1 A 1 1206 1403 PC1 PC1 . H 7 LMT A 1 1207 1404 LMT LMT . I 7 LMT A 1 1208 1405 LMT LMT . J 7 LMT A 1 1209 1406 LMT LMT . K 6 PC1 A 1 1210 1407 PC1 PC1 . L 5 Y01 A 1 1211 1408 Y01 Y01 . M 8 HOH A 1 1301 1306 HOH HOH . M 8 HOH A 2 1302 1303 HOH HOH . M 8 HOH A 3 1303 1302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 PC1 . . . K 6 137.246 128.729 106.539 1 52.28 ? O21 PC1 1210 A 1 HETATM 2 C C21 PC1 . . . K 6 135.864 129.131 106.333 1 52.28 ? C21 PC1 1210 A 1 HETATM 3 O O22 PC1 . . . K 6 135.231 128.618 105.425 1 52.28 ? O22 PC1 1210 A 1 HETATM 4 C C22 PC1 . . . K 6 135.222 130.167 107.227 1 52.28 ? C22 PC1 1210 A 1 HETATM 5 C C23 PC1 . . . K 6 135.068 129.631 108.647 1 52.28 ? C23 PC1 1210 A 1 HETATM 6 C C24 PC1 . . . K 6 136.424 129.322 109.267 1 52.28 ? C24 PC1 1210 A 1 HETATM 7 C C25 PC1 . . . K 6 136.333 129.176 110.781 1 52.28 ? C25 PC1 1210 A 1 HETATM 8 C C26 PC1 . . . K 6 137.724 128.972 111.368 1 52.28 ? C26 PC1 1210 A 1 HETATM 9 C C27 PC1 . . . K 6 137.74 129.17 112.88 1 52.28 ? C27 PC1 1210 A 1 HETATM 10 C C28 PC1 . . . K 6 138.752 130.238 113.28 1 52.28 ? C28 PC1 1210 A 1 HETATM 11 C C29 PC1 . . . K 6 139.208 130.056 114.722 1 52.28 ? C29 PC1 1210 A 1 HETATM 12 C C2A PC1 . . . K 6 139.833 131.336 115.263 1 52.28 ? C2A PC1 1210 A 1 HETATM 13 C C2B PC1 . . . K 6 140.739 131.038 116.45 1 52.28 ? C2B PC1 1210 A 1 HETATM 14 C C2C PC1 . . . K 6 140.946 132.275 117.315 1 52.28 ? C2C PC1 1210 A 1 HETATM 15 C C2D PC1 . . . K 6 141.787 131.94 118.541 1 52.28 ? C2D PC1 1210 A 1 HETATM 16 C C2E PC1 . . . K 6 141.732 133.067 119.564 1 52.28 ? C2E PC1 1210 A 1 HETATM 17 C C2F PC1 . . . K 6 142.785 132.882 120.651 1 52.28 ? C2F PC1 1210 A 1 HETATM 18 C C2G PC1 . . . K 6 142.54 133.849 121.805 1 52.28 ? C2G PC1 1210 A 1 HETATM 19 C C2H PC1 . . . K 6 142.205 133.12 123.101 1 52.28 ? C2H PC1 1210 A 1 HETATM 20 C C2I PC1 . . . K 6 143.455 132.713 123.848 1 52.28 ? C2I PC1 1210 A 1 HETATM 21 H H221 PC1 . . . K 6 134.242 130.437 106.829 1 52.28 ? H221 PC1 1210 A 1 HETATM 22 H H222 PC1 . . . K 6 135.839 131.068 107.243 1 52.28 ? H222 PC1 1210 A 1 HETATM 23 H H231 PC1 . . . K 6 134.461 128.723 108.628 1 52.28 ? H231 PC1 1210 A 1 HETATM 24 H H232 PC1 . . . K 6 134.547 130.369 109.26 1 52.28 ? H232 PC1 1210 A 1 HETATM 25 H H241 PC1 . . . K 6 137.126 130.121 109.021 1 52.28 ? H241 PC1 1210 A 1 HETATM 26 H H242 PC1 . . . K 6 136.813 128.393 108.846 1 52.28 ? H242 PC1 1210 A 1 HETATM 27 H H251 PC1 . . . K 6 135.7 128.322 111.031 1 52.28 ? H251 PC1 1210 A 1 HETATM 28 H H252 PC1 . . . K 6 135.879 130.071 111.21 1 52.28 ? H252 PC1 1210 A 1 HETATM 29 H H261 PC1 . . . K 6 138.415 129.674 110.897 1 52.28 ? H261 PC1 1210 A 1 HETATM 30 H H262 PC1 . . . K 6 138.068 127.962 111.135 1 52.28 ? H262 PC1 1210 A 1 HETATM 31 H H271 PC1 . . . K 6 137.991 128.227 113.369 1 52.28 ? H271 PC1 1210 A 1 HETATM 32 H H272 PC1 . . . K 6 136.745 129.468 113.219 1 52.28 ? H272 PC1 1210 A 1 HETATM 33 H H281 PC1 . . . K 6 138.304 131.227 113.163 1 52.28 ? H281 PC1 1210 A 1 HETATM 34 H H282 PC1 . . . K 6 139.623 130.185 112.623 1 52.28 ? H282 PC1 1210 A 1 HETATM 35 H H291 PC1 . . . K 6 139.94 129.246 114.772 1 52.28 ? H291 PC1 1210 A 1 HETATM 36 H H292 PC1 . . . K 6 138.354 129.776 115.342 1 52.28 ? H292 PC1 1210 A 1 HETATM 37 H H2A1 PC1 . . . K 6 139.042 132.023 115.571 1 52.28 ? H2A1 PC1 1210 A 1 HETATM 38 H H2A2 PC1 . . . K 6 140.411 131.822 114.474 1 52.28 ? H2A2 PC1 1210 A 1 HETATM 39 H H2B1 PC1 . . . K 6 141.707 130.687 116.086 1 52.28 ? H2B1 PC1 1210 A 1 HETATM 40 H H2B2 PC1 . . . K 6 140.299 130.242 117.054 1 52.28 ? H2B2 PC1 1210 A 1 HETATM 41 H H2C1 PC1 . . . K 6 139.977 132.667 117.631 1 52.28 ? H2C1 PC1 1210 A 1 HETATM 42 H H2C2 PC1 . . . K 6 141.447 133.05 116.73 1 52.28 ? H2C2 PC1 1210 A 1 HETATM 43 H H2D1 PC1 . . . K 6 142.823 131.772 118.238 1 52.28 ? H2D1 PC1 1210 A 1 HETATM 44 H H2D2 PC1 . . . K 6 141.417 131.019 118.994 1 52.28 ? H2D2 PC1 1210 A 1 HETATM 45 H H2E1 PC1 . . . K 6 140.74 133.092 120.021 1 52.28 ? H2E1 PC1 1210 A 1 HETATM 46 H H2E2 PC1 . . . K 6 141.893 134.023 119.061 1 52.28 ? H2E2 PC1 1210 A 1 HETATM 47 H H2F1 PC1 . . . K 6 143.776 133.062 120.229 1 52.28 ? H2F1 PC1 1210 A 1 HETATM 48 H H2F2 PC1 . . . K 6 142.758 131.853 121.016 1 52.28 ? H2F2 PC1 1210 A 1 HETATM 49 H H2G1 PC1 . . . K 6 141.722 134.524 121.544 1 52.28 ? H2G1 PC1 1210 A 1 HETATM 50 H H2G2 PC1 . . . K 6 143.433 134.454 121.958 1 52.28 ? H2G2 PC1 1210 A 1 HETATM 51 H H2H1 PC1 . . . K 6 141.607 132.233 122.879 1 52.28 ? H2H1 PC1 1210 A 1 HETATM 52 H H2H2 PC1 . . . K 6 141.604 133.775 123.736 1 52.28 ? H2H2 PC1 1210 A 1 HETATM 53 H H2I1 PC1 . . . K 6 143.845 133.552 124.365 1 52.28 ? H2I1 PC1 1210 A 1 HETATM 54 H H2I2 PC1 . . . K 6 144.177 132.359 123.158 1 52.28 ? H2I2 PC1 1210 A 1 HETATM 55 H H2I3 PC1 . . . K 6 143.221 131.947 124.541 1 52.28 ? H2I3 PC1 1210 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 635 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 55 #