data_7N78 # _model_server_result.job_id noHASNiSON8iUPfEDjFTkA _model_server_result.datetime_utc '2024-11-21 14:36:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1211}' # _entry.id 7N78 # _exptl.entry_id 7N78 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7N78 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 508 A ASP 508 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc2 A O THR 510 A THR 510 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc3 A OD1 ASP 873 A ASP 873 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 B O2 PO4 . A PO4 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 642 n n CBA CAB Y01 sing 643 n n CBA CAN Y01 sing 644 n n CAN CAJ Y01 sing 645 n n CAJ CAO Y01 sing 646 n n CAO CBB Y01 sing 647 n n CBB CAC Y01 sing 648 n n CBB CBE Y01 sing 649 n n CBE CAP Y01 sing 650 n n CBE CBI Y01 sing 651 n n CAP CAQ Y01 sing 652 n n CAQ CBG Y01 sing 653 n n CBG CBI Y01 sing 654 n n CBG CBD Y01 sing 655 n n CBI CAE Y01 sing 656 n n CBI CAU Y01 sing 657 n n CAU CAS Y01 sing 658 n n CAS CBF Y01 sing 659 n n CBF CBD Y01 sing 660 n n CBF CBH Y01 sing 661 n n CBD CAK Y01 sing 662 n n CAK CAI Y01 sing 663 n n CAI CAZ Y01 doub 664 n n CAZ CAV Y01 sing 665 n n CAZ CBH Y01 sing 666 n n CAV CBC Y01 sing 667 n n CBH CAD Y01 sing 668 n n CBH CAT Y01 sing 669 n n CAT CAR Y01 sing 670 n n CAR CBC Y01 sing 671 n n CBC OAW Y01 sing 672 n n OAW CAY Y01 sing 673 n n CAY OAG Y01 doub 674 n n CAY CAM Y01 sing 675 n n CAM CAL Y01 sing 676 n n CAL CAX Y01 sing 677 n n CAX OAH Y01 sing 678 n n CAX OAF Y01 doub 679 n n CAA HAA1 Y01 sing 680 n n CAA HAA2 Y01 sing 681 n n CAA HAA3 Y01 sing 682 n n CBA HBA Y01 sing 683 n n CAB HAB1 Y01 sing 684 n n CAB HAB2 Y01 sing 685 n n CAB HAB3 Y01 sing 686 n n CAN HAN1 Y01 sing 687 n n CAN HAN2 Y01 sing 688 n n CAJ HAJ1 Y01 sing 689 n n CAJ HAJ2 Y01 sing 690 n n CAO HAO1 Y01 sing 691 n n CAO HAO2 Y01 sing 692 n n CBB HBB Y01 sing 693 n n CAC HAC1 Y01 sing 694 n n CAC HAC2 Y01 sing 695 n n CAC HAC3 Y01 sing 696 n n CBE HBE Y01 sing 697 n n CAP HAP1 Y01 sing 698 n n CAP HAP2 Y01 sing 699 n n CAQ HAQ1 Y01 sing 700 n n CAQ HAQ2 Y01 sing 701 n n CBG HBG Y01 sing 702 n n CBD HBD Y01 sing 703 n n CAE HAE1 Y01 sing 704 n n CAE HAE2 Y01 sing 705 n n CAE HAE3 Y01 sing 706 n n CAU HAU1 Y01 sing 707 n n CAU HAU2 Y01 sing 708 n n CAS HAS1 Y01 sing 709 n n CAS HAS2 Y01 sing 710 n n CBF HBF Y01 sing 711 n n CAK HAK1 Y01 sing 712 n n CAK HAK2 Y01 sing 713 n n CAI HAI Y01 sing 714 n n CAV HAV1 Y01 sing 715 n n CAV HAV2 Y01 sing 716 n n CBC HBC Y01 sing 717 n n CAD HAD1 Y01 sing 718 n n CAD HAD2 Y01 sing 719 n n CAD HAD3 Y01 sing 720 n n CAT HAT1 Y01 sing 721 n n CAT HAT2 Y01 sing 722 n n CAR HAR1 Y01 sing 723 n n CAR HAR2 Y01 sing 724 n n CAM HAM1 Y01 sing 725 n n CAM HAM2 Y01 sing 726 n n CAL HAL1 Y01 sing 727 n n CAL HAL2 Y01 sing 728 n n OAH HAH Y01 sing 729 n n # _atom_sites.entry_id 7N78 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1201 1201 PO4 PO4 . C 3 MG A 1 1202 1202 MG MG . D 4 SPM A 1 1203 1301 SPM SPM . E 5 Y01 A 1 1204 1401 Y01 Y01 . F 5 Y01 A 1 1205 1402 Y01 Y01 . G 6 PC1 A 1 1206 1403 PC1 PC1 . H 7 LMT A 1 1207 1404 LMT LMT . I 7 LMT A 1 1208 1405 LMT LMT . J 7 LMT A 1 1209 1406 LMT LMT . K 6 PC1 A 1 1210 1407 PC1 PC1 . L 5 Y01 A 1 1211 1408 Y01 Y01 . M 8 HOH A 1 1301 1306 HOH HOH . M 8 HOH A 2 1302 1303 HOH HOH . M 8 HOH A 3 1303 1302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . L 5 137.091 129.272 118.466 1 53.17 ? CAA Y01 1211 A 1 HETATM 2 C CBA Y01 . . . L 5 137.54 129.362 119.936 1 53.17 ? CBA Y01 1211 A 1 HETATM 3 C CAB Y01 . . . L 5 136.957 128.155 120.686 1 53.17 ? CAB Y01 1211 A 1 HETATM 4 C CAN Y01 . . . L 5 139.09 129.476 120.087 1 53.17 ? CAN Y01 1211 A 1 HETATM 5 C CAJ Y01 . . . L 5 139.763 128.618 121.191 1 53.17 ? CAJ Y01 1211 A 1 HETATM 6 C CAO Y01 . . . L 5 141.266 128.88 121.413 1 53.17 ? CAO Y01 1211 A 1 HETATM 7 C CBB Y01 . . . L 5 142.014 127.743 122.158 1 53.17 ? CBB Y01 1211 A 1 HETATM 8 C CAC Y01 . . . L 5 142.911 126.931 121.198 1 53.17 ? CAC Y01 1211 A 1 HETATM 9 C CBE Y01 . . . L 5 142.832 128.332 123.331 1 53.17 ? CBE Y01 1211 A 1 HETATM 10 C CAP Y01 . . . L 5 142.08 129.234 124.344 1 53.17 ? CAP Y01 1211 A 1 HETATM 11 C CAQ Y01 . . . L 5 142.928 129.274 125.605 1 53.17 ? CAQ Y01 1211 A 1 HETATM 12 C CBG Y01 . . . L 5 144.044 128.313 125.223 1 53.17 ? CBG Y01 1211 A 1 HETATM 13 C CBI Y01 . . . L 5 143.414 127.277 124.292 1 53.17 ? CBI Y01 1211 A 1 HETATM 14 C CAE Y01 . . . L 5 142.352 126.319 124.954 1 53.17 ? CAE Y01 1211 A 1 HETATM 15 C CAU Y01 . . . L 5 144.503 126.363 123.716 1 53.17 ? CAU Y01 1211 A 1 HETATM 16 C CAS Y01 . . . L 5 145.244 125.699 124.872 1 53.17 ? CAS Y01 1211 A 1 HETATM 17 C CBF Y01 . . . L 5 145.74 126.697 125.922 1 53.17 ? CBF Y01 1211 A 1 HETATM 18 C CBD Y01 . . . L 5 144.618 127.619 126.419 1 53.17 ? CBD Y01 1211 A 1 HETATM 19 C CAK Y01 . . . L 5 145.189 128.77 127.266 1 53.17 ? CAK Y01 1211 A 1 HETATM 20 C CAI Y01 . . . L 5 146.271 128.242 128.133 1 53.17 ? CAI Y01 1211 A 1 HETATM 21 C CAZ Y01 . . . L 5 146.605 126.944 128.289 1 53.17 ? CAZ Y01 1211 A 1 HETATM 22 C CAV Y01 . . . L 5 147.508 126.368 129.383 1 53.17 ? CAV Y01 1211 A 1 HETATM 23 C CBH Y01 . . . L 5 146.296 125.997 127.174 1 53.17 ? CBH Y01 1211 A 1 HETATM 24 C CAD Y01 . . . L 5 145.206 125.116 127.839 1 53.17 ? CAD Y01 1211 A 1 HETATM 25 C CAT Y01 . . . L 5 147.542 125.173 126.827 1 53.17 ? CAT Y01 1211 A 1 HETATM 26 C CAR Y01 . . . L 5 148.282 124.506 127.988 1 53.17 ? CAR Y01 1211 A 1 HETATM 27 C CBC Y01 . . . L 5 148.783 125.55 128.986 1 53.17 ? CBC Y01 1211 A 1 HETATM 28 O OAW Y01 . . . L 5 149.455 124.864 130.078 1 53.17 ? OAW Y01 1211 A 1 HETATM 29 C CAY Y01 . . . L 5 150.861 124.816 130.192 1 53.17 ? CAY Y01 1211 A 1 HETATM 30 O OAG Y01 . . . L 5 151.461 125.289 129.248 1 53.17 ? OAG Y01 1211 A 1 HETATM 31 C CAM Y01 . . . L 5 151.668 124.226 131.41 1 53.17 ? CAM Y01 1211 A 1 HETATM 32 C CAL Y01 . . . L 5 151.955 125.247 132.538 1 53.17 ? CAL Y01 1211 A 1 HETATM 33 C CAX Y01 . . . L 5 151.216 125.009 133.929 1 53.17 ? CAX Y01 1211 A 1 HETATM 34 O OAH Y01 . . . L 5 150.211 125.71 134.179 1 53.17 ? OAH Y01 1211 A 1 HETATM 35 O OAF Y01 . . . L 5 151.689 124.136 134.69 1 53.17 ? OAF Y01 1211 A 1 HETATM 36 H HAA1 Y01 . . . L 5 137.32 130.057 117.945 1 53.17 ? HAA1 Y01 1211 A 1 HETATM 37 H HAA2 Y01 . . . L 5 136.132 129.186 118.351 1 53.17 ? HAA2 Y01 1211 A 1 HETATM 38 H HAA3 Y01 . . . L 5 137.461 128.516 117.983 1 53.17 ? HAA3 Y01 1211 A 1 HETATM 39 H HBA Y01 . . . L 5 137.128 130.158 120.306 1 53.17 ? HBA Y01 1211 A 1 HETATM 40 H HAB1 Y01 . . . L 5 137.077 128.209 121.647 1 53.17 ? HAB1 Y01 1211 A 1 HETATM 41 H HAB2 Y01 . . . L 5 137.335 127.303 120.416 1 53.17 ? HAB2 Y01 1211 A 1 HETATM 42 H HAB3 Y01 . . . L 5 136 128.044 120.568 1 53.17 ? HAB3 Y01 1211 A 1 HETATM 43 H HAN1 Y01 . . . L 5 139.325 130.405 120.227 1 53.17 ? HAN1 Y01 1211 A 1 HETATM 44 H HAN2 Y01 . . . L 5 139.509 129.264 119.238 1 53.17 ? HAN2 Y01 1211 A 1 HETATM 45 H HAJ1 Y01 . . . L 5 139.312 128.762 122.038 1 53.17 ? HAJ1 Y01 1211 A 1 HETATM 46 H HAJ2 Y01 . . . L 5 139.649 127.674 120.998 1 53.17 ? HAJ2 Y01 1211 A 1 HETATM 47 H HAO1 Y01 . . . L 5 141.743 129.06 120.588 1 53.17 ? HAO1 Y01 1211 A 1 HETATM 48 H HAO2 Y01 . . . L 5 141.377 129.707 121.898 1 53.17 ? HAO2 Y01 1211 A 1 HETATM 49 H HBB Y01 . . . L 5 141.379 127.137 122.568 1 53.17 ? HBB Y01 1211 A 1 HETATM 50 H HAC1 Y01 . . . L 5 143.856 127.146 121.201 1 53.17 ? HAC1 Y01 1211 A 1 HETATM 51 H HAC2 Y01 . . . L 5 142.906 125.979 121.377 1 53.17 ? HAC2 Y01 1211 A 1 HETATM 52 H HAC3 Y01 . . . L 5 142.654 127.02 120.266 1 53.17 ? HAC3 Y01 1211 A 1 HETATM 53 H HBE Y01 . . . L 5 143.581 128.832 122.973 1 53.17 ? HBE Y01 1211 A 1 HETATM 54 H HAP1 Y01 . . . L 5 141.956 130.142 124.031 1 53.17 ? HAP1 Y01 1211 A 1 HETATM 55 H HAP2 Y01 . . . L 5 141.208 128.863 124.554 1 53.17 ? HAP2 Y01 1211 A 1 HETATM 56 H HAQ1 Y01 . . . L 5 142.474 129.013 126.421 1 53.17 ? HAQ1 Y01 1211 A 1 HETATM 57 H HAQ2 Y01 . . . L 5 143.289 130.126 125.894 1 53.17 ? HAQ2 Y01 1211 A 1 HETATM 58 H HBG Y01 . . . L 5 144.79 128.816 124.864 1 53.17 ? HBG Y01 1211 A 1 HETATM 59 H HBD Y01 . . . L 5 143.862 127.238 126.885 1 53.17 ? HBD Y01 1211 A 1 HETATM 60 H HAE1 Y01 . . . L 5 141.982 125.668 124.337 1 53.17 ? HAE1 Y01 1211 A 1 HETATM 61 H HAE2 Y01 . . . L 5 141.628 126.763 125.422 1 53.17 ? HAE2 Y01 1211 A 1 HETATM 62 H HAE3 Y01 . . . L 5 142.685 125.713 125.627 1 53.17 ? HAE3 Y01 1211 A 1 HETATM 63 H HAU1 Y01 . . . L 5 145.159 126.796 123.148 1 53.17 ? HAU1 Y01 1211 A 1 HETATM 64 H HAU2 Y01 . . . L 5 144.051 125.653 123.238 1 53.17 ? HAU2 Y01 1211 A 1 HETATM 65 H HAS1 Y01 . . . L 5 145.891 125.136 124.418 1 53.17 ? HAS1 Y01 1211 A 1 HETATM 66 H HAS2 Y01 . . . L 5 144.653 125.061 125.275 1 53.17 ? HAS2 Y01 1211 A 1 HETATM 67 H HBF Y01 . . . L 5 146.361 127.278 125.456 1 53.17 ? HBF Y01 1211 A 1 HETATM 68 H HAK1 Y01 . . . L 5 145.417 129.506 126.682 1 53.17 ? HAK1 Y01 1211 A 1 HETATM 69 H HAK2 Y01 . . . L 5 144.414 129.159 127.695 1 53.17 ? HAK2 Y01 1211 A 1 HETATM 70 H HAI Y01 . . . L 5 146.711 128.976 128.496 1 53.17 ? HAI Y01 1211 A 1 HETATM 71 H HAV1 Y01 . . . L 5 147.78 127.087 129.973 1 53.17 ? HAV1 Y01 1211 A 1 HETATM 72 H HAV2 Y01 . . . L 5 146.928 125.779 129.89 1 53.17 ? HAV2 Y01 1211 A 1 HETATM 73 H HBC Y01 . . . L 5 149.394 126.132 128.508 1 53.17 ? HBC Y01 1211 A 1 HETATM 74 H HAD1 Y01 . . . L 5 145.01 125.509 128.704 1 53.17 ? HAD1 Y01 1211 A 1 HETATM 75 H HAD2 Y01 . . . L 5 144.337 125.13 127.416 1 53.17 ? HAD2 Y01 1211 A 1 HETATM 76 H HAD3 Y01 . . . L 5 145.476 124.201 128.015 1 53.17 ? HAD3 Y01 1211 A 1 HETATM 77 H HAT1 Y01 . . . L 5 147.305 124.475 126.196 1 53.17 ? HAT1 Y01 1211 A 1 HETATM 78 H HAT2 Y01 . . . L 5 148.159 125.744 126.342 1 53.17 ? HAT2 Y01 1211 A 1 HETATM 79 H HAR1 Y01 . . . L 5 149.052 124.026 127.646 1 53.17 ? HAR1 Y01 1211 A 1 HETATM 80 H HAR2 Y01 . . . L 5 147.737 123.82 128.403 1 53.17 ? HAR2 Y01 1211 A 1 HETATM 81 H HAM1 Y01 . . . L 5 151.172 123.496 131.814 1 53.17 ? HAM1 Y01 1211 A 1 HETATM 82 H HAM2 Y01 . . . L 5 152.517 123.839 131.146 1 53.17 ? HAM2 Y01 1211 A 1 HETATM 83 H HAL1 Y01 . . . L 5 151.737 126.152 132.265 1 53.17 ? HAL1 Y01 1211 A 1 HETATM 84 H HAL2 Y01 . . . L 5 152.902 125.286 132.741 1 53.17 ? HAL2 Y01 1211 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 84 #