data_7N7E # _model_server_result.job_id cai30pOZifiEPuJ7AlMmdw _model_server_result.datetime_utc '2025-02-27 21:09:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 7N7E # _exptl.entry_id 7N7E _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 336.361 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BERBERINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog TYPE_6_PAIR hydrog1 A N1 DG 4 A DG 7 1_555 A O6 DG 8 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A N2 DG 4 A DG 7 1_555 A N7 DG 8 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N7 DG 4 A DG 7 1_555 A N2 DG 17 A DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A O6 DG 4 A DG 7 1_555 A N1 DG 17 A DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N1 DG 5 A DG 8 1_555 A O6 DG 9 A DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A N2 DG 5 A DG 8 1_555 A N7 DG 9 A DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N7 DG 5 A DG 8 1_555 A N2 DG 18 A DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A O6 DG 5 A DG 8 1_555 A N1 DG 18 A DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog9 A N1 DG 6 A DG 9 1_555 A O6 DG 10 A DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 A N2 DG 6 A DG 9 1_555 A N7 DG 10 A DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 A N7 DG 6 A DG 9 1_555 A N2 DG 19 A DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 A O6 DG 6 A DG 9 1_555 A N1 DG 19 A DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 A N1 DG 8 A DG 11 1_555 A O6 DG 13 A DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog14 A N2 DG 8 A DG 11 1_555 A N7 DG 13 A DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N1 DG 9 A DG 12 1_555 A O6 DG 14 A DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A N2 DG 9 A DG 12 1_555 A N7 DG 14 A DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 A N1 DG 10 A DG 13 1_555 A O6 DG 15 A DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 A N2 DG 10 A DG 13 1_555 A N7 DG 15 A DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 A N1 DG 13 A DG 16 1_555 A O6 DG 17 A DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 A N2 DG 13 A DG 16 1_555 A N7 DG 17 A DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog21 A N1 DG 14 A DG 17 1_555 A O6 DG 18 A DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 A N2 DG 14 A DG 17 1_555 A N7 DG 18 A DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog23 A N1 DG 15 A DG 18 1_555 A O6 DG 19 A DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog24 A N2 DG 15 A DG 18 1_555 A N7 DG 19 A DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C20 H18 N O4 1' _chem_comp.formula_weight 336.361 _chem_comp.id BER _chem_comp.mon_nstd_flag . _chem_comp.name BERBERINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BER sing 1 n y C1 N1 BER doub 2 n y C1 C3 BER sing 3 n y C2 C4 BER doub 4 n y C2 C5 BER sing 5 n y N1 C6 BER sing 6 n y N1 C7 BER sing 7 n n C3 C8 BER doub 8 n y C3 H31 BER sing 9 n n C4 C9 BER sing 10 n y C4 C10 BER sing 11 n n C5 C11 BER doub 12 n y C5 H51 BER sing 13 n n C6 C12 BER doub 14 n y C6 H61 BER sing 15 n n C7 C10 BER sing 16 n n C7 H71 BER sing 17 n n C7 H72 BER sing 18 n n C8 C12 BER sing 19 n y C8 C13 BER sing 20 n y C9 C14 BER doub 21 n y C9 H91 BER sing 22 n n C10 H101 BER sing 23 n n C10 H102 BER sing 24 n n C11 C14 BER sing 25 n y C11 O1 BER sing 26 n n C12 C15 BER sing 27 n y C13 C16 BER doub 28 n y C13 H131 BER sing 29 n n C14 O2 BER sing 30 n n O1 C17 BER sing 31 n n C15 C18 BER doub 32 n y C15 O3 BER sing 33 n n C16 C18 BER sing 34 n y C16 H161 BER sing 35 n n O2 C17 BER sing 36 n n C17 H171 BER sing 37 n n C17 H172 BER sing 38 n n C18 O4 BER sing 39 n n O3 C19 BER sing 40 n n O4 C20 BER sing 41 n n C19 H191 BER sing 42 n n C19 H192 BER sing 43 n n C19 H193 BER sing 44 n n C20 H201 BER sing 45 n n C20 H202 BER sing 46 n n C20 H203 BER sing 47 n n # _atom_sites.entry_id 7N7E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BER A 1 101 26 BER BER . C 2 BER A 1 102 27 BER BER . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BER . . . B 2 25.41 21.58 25.61 1 0 ? C1 BER 101 A 1 HETATM 2 C C2 BER . . . B 2 26.364 21.75 24.516 1 0 ? C2 BER 101 A 1 HETATM 3 N N1 BER . . . B 2 24.459 22.618 25.656 1 0 ? N1 BER 101 A 1 HETATM 4 C C3 BER . . . B 2 25.42 20.458 26.464 1 0 ? C3 BER 101 A 1 HETATM 5 C C4 BER . . . B 2 26.243 22.766 23.56 1 0 ? C4 BER 101 A 1 HETATM 6 C C5 BER . . . B 2 27.456 20.837 24.387 1 0 ? C5 BER 101 A 1 HETATM 7 C C6 BER . . . B 2 23.435 22.404 26.554 1 0 ? C6 BER 101 A 1 HETATM 8 C C7 BER . . . B 2 24.656 23.954 25.05 1 0 ? C7 BER 101 A 1 HETATM 9 C C8 BER . . . B 2 24.375 20.308 27.393 1 0 ? C8 BER 101 A 1 HETATM 10 C C9 BER . . . B 2 27.174 22.886 22.497 1 0 ? C9 BER 101 A 1 HETATM 11 C C10 BER . . . B 2 25.115 23.756 23.623 1 0 ? C10 BER 101 A 1 HETATM 12 C C11 BER . . . B 2 28.36 20.986 23.323 1 0 ? C11 BER 101 A 1 HETATM 13 C C12 BER . . . B 2 23.376 21.261 27.44 1 0 ? C12 BER 101 A 1 HETATM 14 C C13 BER . . . B 2 24.331 19.197 28.261 1 0 ? C13 BER 101 A 1 HETATM 15 C C14 BER . . . B 2 28.227 21.967 22.417 1 0 ? C14 BER 101 A 1 HETATM 16 O O1 BER . . . B 2 29.467 20.254 23.033 1 0 ? O1 BER 101 A 1 HETATM 17 C C15 BER . . . B 2 22.31 21.137 28.368 1 0 ? C15 BER 101 A 1 HETATM 18 C C16 BER . . . B 2 23.284 19.06 29.188 1 0 ? C16 BER 101 A 1 HETATM 19 O O2 BER . . . B 2 29.238 21.894 21.514 1 0 ? O2 BER 101 A 1 HETATM 20 C C17 BER . . . B 2 30.141 20.835 21.895 1 0 ? C17 BER 101 A 1 HETATM 21 C C18 BER . . . B 2 22.265 20.032 29.252 1 0 ? C18 BER 101 A 1 HETATM 22 O O3 BER . . . B 2 21.361 22.144 28.42 1 0 ? O3 BER 101 A 1 HETATM 23 O O4 BER . . . B 2 21.243 19.939 30.18 1 0 ? O4 BER 101 A 1 HETATM 24 C C19 BER . . . B 2 19.974 21.893 28.255 1 0 ? C19 BER 101 A 1 HETATM 25 C C20 BER . . . B 2 20.963 18.772 30.938 1 0 ? C20 BER 101 A 1 HETATM 26 H H31 BER . . . B 2 26.168 19.686 26.406 1 0 ? H31 BER 101 A 1 HETATM 27 H H51 BER . . . B 2 27.648 20.037 25.082 1 0 ? H51 BER 101 A 1 HETATM 28 H H61 BER . . . B 2 22.684 23.179 26.607 1 0 ? H61 BER 101 A 1 HETATM 29 H H71 BER . . . B 2 23.729 24.527 25.062 1 0 ? H71 BER 101 A 1 HETATM 30 H H72 BER . . . B 2 25.412 24.504 25.609 1 0 ? H72 BER 101 A 1 HETATM 31 H H91 BER . . . B 2 27.088 23.669 21.758 1 0 ? H91 BER 101 A 1 HETATM 32 H H101 BER . . . B 2 25.45 24.713 23.225 1 0 ? H101 BER 101 A 1 HETATM 33 H H102 BER . . . B 2 24.285 23.39 23.017 1 0 ? H102 BER 101 A 1 HETATM 34 H H131 BER . . . B 2 25.112 18.449 28.225 1 0 ? H131 BER 101 A 1 HETATM 35 H H161 BER . . . B 2 23.28 18.209 29.853 1 0 ? H161 BER 101 A 1 HETATM 36 H H171 BER . . . B 2 31.108 21.246 22.19 1 0 ? H171 BER 101 A 1 HETATM 37 H H172 BER . . . B 2 30.256 20.106 21.091 1 0 ? H172 BER 101 A 1 HETATM 38 H H191 BER . . . B 2 19.573 21.353 29.112 1 0 ? H191 BER 101 A 1 HETATM 39 H H192 BER . . . B 2 19.445 22.843 28.174 1 0 ? H192 BER 101 A 1 HETATM 40 H H193 BER . . . B 2 19.803 21.313 27.348 1 0 ? H193 BER 101 A 1 HETATM 41 H H201 BER . . . B 2 20.086 18.951 31.56 1 0 ? H201 BER 101 A 1 HETATM 42 H H202 BER . . . B 2 20.761 17.929 30.275 1 0 ? H202 BER 101 A 1 HETATM 43 H H203 BER . . . B 2 21.805 18.536 31.59 1 0 ? H203 BER 101 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 2305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #