data_7N7I # _model_server_result.job_id pknpijd6SX0ai0EaxwP-OA _model_server_result.datetime_utc '2025-02-22 15:22:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7N7I # _exptl.entry_id 7N7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7N7I _cell.length_a 85.943 _cell.length_b 85.943 _cell.length_c 111.718 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F 1 1 B,G,H,I 2 1 C,J,K,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D N SAM . A SAM 401 1_555 E FE2 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc2 D OXT SAM . A SAM 401 1_555 E FE2 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc3 G N SAM . B SAM 401 1_555 H FE2 SF4 . B SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc4 G OXT SAM . B SAM 401 1_555 H FE2 SF4 . B SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc5 J OXT SAM . C SAM 401 1_555 K FE2 SF4 . C SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 275 n n N HN1 SAM sing 276 n n N HN2 SAM sing 277 n n CA C SAM sing 278 n n CA CB SAM sing 279 n n CA HA SAM sing 280 n n C O SAM doub 281 n n C OXT SAM sing 282 n n CB CG SAM sing 283 n n CB HB1 SAM sing 284 n n CB HB2 SAM sing 285 n n CG SD SAM sing 286 n n CG HG1 SAM sing 287 n n CG HG2 SAM sing 288 n n SD CE SAM sing 289 n n SD C5' SAM sing 290 n n CE HE1 SAM sing 291 n n CE HE2 SAM sing 292 n n CE HE3 SAM sing 293 n n C5' C4' SAM sing 294 n n C5' "H5'1" SAM sing 295 n n C5' "H5'2" SAM sing 296 n n C4' O4' SAM sing 297 n n C4' C3' SAM sing 298 n n C4' H4' SAM sing 299 n n O4' C1' SAM sing 300 n n C3' O3' SAM sing 301 n n C3' C2' SAM sing 302 n n C3' H3' SAM sing 303 n n O3' HO3' SAM sing 304 n n C2' O2' SAM sing 305 n n C2' C1' SAM sing 306 n n C2' H2' SAM sing 307 n n O2' HO2' SAM sing 308 n n C1' N9 SAM sing 309 n n C1' H1' SAM sing 310 n n N9 C8 SAM sing 311 n y N9 C4 SAM sing 312 n y C8 N7 SAM doub 313 n y C8 H8 SAM sing 314 n n N7 C5 SAM sing 315 n y C5 C6 SAM sing 316 n y C5 C4 SAM doub 317 n y C6 N6 SAM sing 318 n n C6 N1 SAM doub 319 n y N6 HN61 SAM sing 320 n n N6 HN62 SAM sing 321 n n N1 C2 SAM sing 322 n y C2 N3 SAM doub 323 n y C2 H2 SAM sing 324 n n N3 C4 SAM sing 325 n y # _atom_sites.entry_id 7N7I _atom_sites.fract_transf_matrix[1][1] 0.011636 _atom_sites.fract_transf_matrix[1][2] 0.006718 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SAM A 1 401 304 SAM SAM . E 3 SF4 A 1 402 305 SF4 SF4 . F 4 UTP A 1 403 306 UTP UTP . G 2 SAM B 1 401 304 SAM SAM . H 3 SF4 B 1 402 305 SF4 SF4 . I 4 UTP B 1 403 306 UTP UTP . J 2 SAM C 1 401 304 SAM SAM . K 3 SF4 C 1 402 305 SF4 SF4 . L 4 UTP C 1 403 306 UTP UTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . D 2 -45.09 -69.568 15.09 1 33.44 ? N SAM 401 A 1 HETATM 2 C CA SAM . . . D 2 -43.953 -69.866 14.229 1 36.83 ? CA SAM 401 A 1 HETATM 3 C C SAM . . . D 2 -43.529 -68.637 13.431 1 39.56 ? C SAM 401 A 1 HETATM 4 O O SAM . . . D 2 -42.675 -68.721 12.551 1 41.34 ? O SAM 401 A 1 HETATM 5 O OXT SAM . . . D 2 -44.023 -67.532 13.651 1 44.04 ? OXT SAM 401 A 1 HETATM 6 C CB SAM . . . D 2 -44.284 -71.03 13.298 1 37.35 ? CB SAM 401 A 1 HETATM 7 C CG SAM . . . D 2 -45.738 -71.14 12.85 1 39.67 ? CG SAM 401 A 1 HETATM 8 S SD SAM . . . D 2 -46.269 -69.831 11.714 1 43.58 ? SD SAM 401 A 1 HETATM 9 C CE SAM . . . D 2 -48.062 -70.076 11.78 1 43.23 ? CE SAM 401 A 1 HETATM 10 C C5' SAM . . . D 2 -45.864 -70.522 10.084 1 36.12 ? C5' SAM 401 A 1 HETATM 11 C C4' SAM . . . D 2 -45.585 -69.449 9.035 1 29.33 ? C4' SAM 401 A 1 HETATM 12 O O4' SAM . . . D 2 -46.801 -68.931 8.536 1 24.44 ? O4' SAM 401 A 1 HETATM 13 C C3' SAM . . . D 2 -44.813 -68.278 9.629 1 27.27 ? C3' SAM 401 A 1 HETATM 14 O O3' SAM . . . D 2 -43.619 -68.068 8.911 1 26.4 ? O3' SAM 401 A 1 HETATM 15 C C2' SAM . . . D 2 -45.725 -67.076 9.481 1 25.19 ? C2' SAM 401 A 1 HETATM 16 O O2' SAM . . . D 2 -45.01 -65.925 9.093 1 24.85 ? O2' SAM 401 A 1 HETATM 17 C C1' SAM . . . D 2 -46.702 -67.527 8.407 1 22.27 ? C1' SAM 401 A 1 HETATM 18 N N9 SAM . . . D 2 -48.02 -66.897 8.568 1 18.34 ? N9 SAM 401 A 1 HETATM 19 C C8 SAM . . . D 2 -48.641 -66.599 9.751 1 17.4 ? C8 SAM 401 A 1 HETATM 20 N N7 SAM . . . D 2 -49.832 -66.029 9.467 1 15.65 ? N7 SAM 401 A 1 HETATM 21 C C5 SAM . . . D 2 -49.975 -65.953 8.126 1 15.43 ? C5 SAM 401 A 1 HETATM 22 C C6 SAM . . . D 2 -50.996 -65.462 7.326 1 15.54 ? C6 SAM 401 A 1 HETATM 23 N N6 SAM . . . D 2 -52.088 -64.938 7.878 1 16.73 ? N6 SAM 401 A 1 HETATM 24 N N1 SAM . . . D 2 -50.864 -65.52 5.953 1 13.96 ? N1 SAM 401 A 1 HETATM 25 C C2 SAM . . . D 2 -49.727 -66.066 5.39 1 13.84 ? C2 SAM 401 A 1 HETATM 26 N N3 SAM . . . D 2 -48.718 -66.553 6.195 1 13.82 ? N3 SAM 401 A 1 HETATM 27 C C4 SAM . . . D 2 -48.84 -66.497 7.543 1 15.72 ? C4 SAM 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #