data_7N7L # _model_server_result.job_id 1JLKOPmtN2TI5iRGelAEFg _model_server_result.datetime_utc '2024-11-25 01:54:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7N7L # _exptl.entry_id 7N7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-5,7-dimethyl-8-(3-methylbutyl)-7,8-dihydropteridin-6(5H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7N7L _cell.length_a 136.28 _cell.length_b 136.28 _cell.length_c 95.444 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_527 x,x-y-3,-z+13/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 204.42 -354.065826 206.795333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 F2 N5 O2' _chem_comp.formula_weight 391.415 _chem_comp.id 584 _chem_comp.mon_nstd_flag . _chem_comp.name (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-5,7-dimethyl-8-(3-methylbutyl)-7,8-dihydropteridin-6(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C7 584 sing 1 n n C10 C8 584 sing 2 n n C7 C11 584 sing 3 n n C7 C6 584 sing 4 n n C5 C6 584 sing 5 n n C5 N4 584 sing 6 n n C8 N4 584 sing 7 n n C8 C9 584 sing 8 n n N4 C2 584 sing 9 n n O1 C9 584 doub 10 n n O2 C17 584 sing 11 n n C9 N5 584 sing 12 n n F2 C18 584 sing 13 n n C17 C18 584 doub 14 n y C17 C16 584 sing 15 n y C18 C19 584 sing 16 n y C2 N2 584 doub 17 n y C2 C3 584 sing 18 n y N2 C1 584 sing 19 n y N5 C3 584 sing 20 n n N5 C13 584 sing 21 n n C16 F1 584 sing 22 n n C16 C15 584 doub 23 n y C19 C14 584 doub 24 n y C3 C4 584 doub 25 n y C15 C14 584 sing 26 n y C14 N3 584 sing 27 n n C1 N3 584 sing 28 n n C1 N1 584 doub 29 n y C4 N1 584 sing 30 n y O2 H1 584 sing 31 n n C11 H2 584 sing 32 n n C11 H3 584 sing 33 n n C11 H4 584 sing 34 n n C12 H5 584 sing 35 n n C12 H6 584 sing 36 n n C12 H7 584 sing 37 n n C13 H8 584 sing 38 n n C13 H9 584 sing 39 n n C13 H10 584 sing 40 n n C15 H11 584 sing 41 n n C19 H12 584 sing 42 n n C4 H13 584 sing 43 n n N3 H14 584 sing 44 n n C5 H15 584 sing 45 n n C5 H16 584 sing 46 n n C6 H17 584 sing 47 n n C6 H18 584 sing 48 n n C7 H19 584 sing 49 n n C8 H20 584 sing 50 n n C10 H21 584 sing 51 n n C10 H22 584 sing 52 n n C10 H23 584 sing 53 n n # _atom_sites.entry_id 7N7L _atom_sites.fract_transf_matrix[1][1] 0.007338 _atom_sites.fract_transf_matrix[1][2] 0.004237 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008473 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 584 A 1 501 1 584 DRG . C 3 SO4 A 1 502 1 SO4 SO4 . D 3 SO4 A 1 503 2 SO4 SO4 . E 3 SO4 A 1 504 3 SO4 SO4 . F 4 HOH A 1 601 30 HOH HOH . F 4 HOH A 2 602 11 HOH HOH . F 4 HOH A 3 603 77 HOH HOH . F 4 HOH A 4 604 4 HOH HOH . F 4 HOH A 5 605 2 HOH HOH . F 4 HOH A 6 606 89 HOH HOH . F 4 HOH A 7 607 76 HOH HOH . F 4 HOH A 8 608 35 HOH HOH . F 4 HOH A 9 609 68 HOH HOH . F 4 HOH A 10 610 79 HOH HOH . F 4 HOH A 11 611 72 HOH HOH . F 4 HOH A 12 612 21 HOH HOH . F 4 HOH A 13 613 97 HOH HOH . F 4 HOH A 14 614 10 HOH HOH . F 4 HOH A 15 615 48 HOH HOH . F 4 HOH A 16 616 51 HOH HOH . F 4 HOH A 17 617 44 HOH HOH . F 4 HOH A 18 618 14 HOH HOH . F 4 HOH A 19 619 40 HOH HOH . F 4 HOH A 20 620 34 HOH HOH . F 4 HOH A 21 621 5 HOH HOH . F 4 HOH A 22 622 37 HOH HOH . F 4 HOH A 23 623 50 HOH HOH . F 4 HOH A 24 624 98 HOH HOH . F 4 HOH A 25 625 15 HOH HOH . F 4 HOH A 26 626 63 HOH HOH . F 4 HOH A 27 627 74 HOH HOH . F 4 HOH A 28 628 23 HOH HOH . F 4 HOH A 29 629 3 HOH HOH . F 4 HOH A 30 630 81 HOH HOH . F 4 HOH A 31 631 94 HOH HOH . F 4 HOH A 32 632 26 HOH HOH . F 4 HOH A 33 633 60 HOH HOH . F 4 HOH A 34 634 1 HOH HOH . F 4 HOH A 35 635 96 HOH HOH . F 4 HOH A 36 636 24 HOH HOH . F 4 HOH A 37 637 91 HOH HOH . F 4 HOH A 38 638 83 HOH HOH . F 4 HOH A 39 639 12 HOH HOH . F 4 HOH A 40 640 22 HOH HOH . F 4 HOH A 41 641 45 HOH HOH . F 4 HOH A 42 642 53 HOH HOH . F 4 HOH A 43 643 18 HOH HOH . F 4 HOH A 44 644 41 HOH HOH . F 4 HOH A 45 645 66 HOH HOH . F 4 HOH A 46 646 85 HOH HOH . F 4 HOH A 47 647 16 HOH HOH . F 4 HOH A 48 648 42 HOH HOH . F 4 HOH A 49 649 56 HOH HOH . F 4 HOH A 50 650 31 HOH HOH . F 4 HOH A 51 651 6 HOH HOH . F 4 HOH A 52 652 38 HOH HOH . F 4 HOH A 53 653 67 HOH HOH . F 4 HOH A 54 654 84 HOH HOH . F 4 HOH A 55 655 39 HOH HOH . F 4 HOH A 56 656 43 HOH HOH . F 4 HOH A 57 657 95 HOH HOH . F 4 HOH A 58 658 17 HOH HOH . F 4 HOH A 59 659 93 HOH HOH . F 4 HOH A 60 660 20 HOH HOH . F 4 HOH A 61 661 29 HOH HOH . F 4 HOH A 62 662 13 HOH HOH . F 4 HOH A 63 663 36 HOH HOH . F 4 HOH A 64 664 80 HOH HOH . F 4 HOH A 65 665 90 HOH HOH . F 4 HOH A 66 666 64 HOH HOH . F 4 HOH A 67 667 46 HOH HOH . F 4 HOH A 68 668 55 HOH HOH . F 4 HOH A 69 669 58 HOH HOH . F 4 HOH A 70 670 57 HOH HOH . F 4 HOH A 71 671 92 HOH HOH . F 4 HOH A 72 672 27 HOH HOH . F 4 HOH A 73 673 82 HOH HOH . F 4 HOH A 74 674 49 HOH HOH . F 4 HOH A 75 675 87 HOH HOH . F 4 HOH A 76 676 54 HOH HOH . F 4 HOH A 77 677 33 HOH HOH . F 4 HOH A 78 678 86 HOH HOH . F 4 HOH A 79 679 62 HOH HOH . F 4 HOH A 80 680 69 HOH HOH . F 4 HOH A 81 681 59 HOH HOH . F 4 HOH A 82 682 65 HOH HOH . F 4 HOH A 83 683 88 HOH HOH . F 4 HOH A 84 684 28 HOH HOH . F 4 HOH A 85 685 70 HOH HOH . F 4 HOH A 86 686 99 HOH HOH . F 4 HOH A 87 687 19 HOH HOH . F 4 HOH A 88 688 75 HOH HOH . F 4 HOH A 89 689 25 HOH HOH . F 4 HOH A 90 690 7 HOH HOH . F 4 HOH A 91 691 8 HOH HOH . F 4 HOH A 92 692 52 HOH HOH . F 4 HOH A 93 693 61 HOH HOH . F 4 HOH A 94 694 32 HOH HOH . F 4 HOH A 95 695 71 HOH HOH . F 4 HOH A 96 696 47 HOH HOH . F 4 HOH A 97 697 100 HOH HOH . F 4 HOH A 98 698 9 HOH HOH . F 4 HOH A 99 699 78 HOH HOH . F 4 HOH A 100 700 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 584 . . . B 2 137.06 -188.44 93.268 1 60.65 ? C1 584 501 A 1 HETATM 2 C C2 584 . . . B 2 135.327 -189.842 94.035 1 63.86 ? C2 584 501 A 1 HETATM 3 C C3 584 . . . B 2 135.714 -189.602 95.361 1 61.47 ? C3 584 501 A 1 HETATM 4 O O1 584 . . . B 2 133.563 -191.635 97.18 1 67.55 ? O1 584 501 A 1 HETATM 5 O O2 584 . . . B 2 138.041 -188.963 86.984 1 72.16 ? O2 584 501 A 1 HETATM 6 C C11 584 . . . B 2 134.648 -193.783 90.028 1 85.81 ? C11 584 501 A 1 HETATM 7 C C12 584 . . . B 2 133.625 -191.734 89.123 1 82.38 ? C12 584 501 A 1 HETATM 8 C C13 584 . . . B 2 135.74 -190.149 97.76 1 60.2 ? C13 584 501 A 1 HETATM 9 C C14 584 . . . B 2 137.782 -188.189 91.031 1 64.92 ? C14 584 501 A 1 HETATM 10 C C15 584 . . . B 2 137.257 -189.382 90.523 1 68.49 ? C15 584 501 A 1 HETATM 11 C C16 584 . . . B 2 137.33 -189.658 89.15 1 71.7 ? C16 584 501 A 1 HETATM 12 C C17 584 . . . B 2 137.944 -188.72 88.319 1 69.41 ? C17 584 501 A 1 HETATM 13 C C18 584 . . . B 2 138.471 -187.536 88.806 1 68.62 ? C18 584 501 A 1 HETATM 14 C C19 584 . . . B 2 138.384 -187.284 90.167 1 69.11 ? C19 584 501 A 1 HETATM 15 N N1 584 . . . B 2 137.459 -188.202 94.52 1 57.62 ? N1 584 501 A 1 HETATM 16 N N2 584 . . . B 2 135.998 -189.232 93.034 1 59.98 ? N2 584 501 A 1 HETATM 17 C C4 584 . . . B 2 136.804 -188.786 95.593 1 58.7 ? C4 584 501 A 1 HETATM 18 N N3 584 . . . B 2 137.762 -187.815 92.313 1 64.32 ? N3 584 501 A 1 HETATM 19 N N4 584 . . . B 2 134.249 -190.628 93.785 1 67.31 ? N4 584 501 A 1 HETATM 20 C C5 584 . . . B 2 133.718 -190.874 92.379 1 68.78 ? C5 584 501 A 1 HETATM 21 C C6 584 . . . B 2 134.653 -191.666 91.439 1 78.31 ? C6 584 501 A 1 HETATM 22 C C7 584 . . . B 2 133.866 -192.516 90.413 1 83.41 ? C7 584 501 A 1 HETATM 23 C C8 584 . . . B 2 133.425 -191.099 94.959 1 67.44 ? C8 584 501 A 1 HETATM 24 C C9 584 . . . B 2 134.051 -191.025 96.215 1 68.2 ? C9 584 501 A 1 HETATM 25 N N5 584 . . . B 2 135.107 -190.204 96.407 1 64.27 ? N5 584 501 A 1 HETATM 26 C C10 584 . . . B 2 132.175 -190.229 95.103 1 68.34 ? C10 584 501 A 1 HETATM 27 F F1 584 . . . B 2 136.772 -190.938 88.593 1 71.77 ? F1 584 501 A 1 HETATM 28 F F2 584 . . . B 2 139.064 -186.639 87.997 1 74.68 ? F2 584 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #