data_7N7M
#
_model_server_result.job_id            Z1rGB1kYkuui4WOYONq7kg 
_model_server_result.datetime_utc      '2024-11-08 17:57:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n7m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    7N7M 
#
_exptl.entry_id    7N7M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              521.654 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7N7M 
_cell.length_a            136.411 
_cell.length_b            136.411 
_cell.length_c            95.006 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N7M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_527 x,x-y-3,-z+13/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 204.6165 -354.406174 205.846333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H39 N7 O3' 
_chem_comp.formula_weight    521.654 
_chem_comp.id                R78 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C4 R78 doub 277 n y 
N1 C1 R78 sing 278 n y 
N3 C5 R78 sing 279 n n 
N3 C8 R78 sing 280 n n 
N3 C2 R78 sing 281 n n 
C4 C3 R78 sing 282 n y 
C5 C6 R78 sing 283 n n 
C5 C9 R78 sing 284 n n 
C6 O1 R78 doub 285 n n 
C6 N4 R78 sing 286 n n 
C7 C20 R78 doub 287 n y 
C7 C16 R78 sing 288 n y 
C7 N5 R78 sing 289 n n 
C8 C15 R78 sing 290 n n 
C8 C12 R78 sing 291 n n 
C10 C9 R78 sing 292 n n 
C13 C14 R78 sing 293 n n 
C13 C12 R78 sing 294 n n 
C15 C14 R78 sing 295 n n 
C17 C18 R78 sing 296 n y 
C17 C16 R78 doub 297 n y 
C20 C19 R78 sing 298 n y 
C21 O2 R78 doub 299 n n 
C21 N6 R78 sing 300 n n 
C21 C18 R78 sing 301 n n 
C22 N6 R78 sing 302 n n 
C22 C29 R78 sing 303 n n 
C22 C23 R78 sing 304 n n 
C24 N7 R78 sing 305 n n 
C24 C23 R78 sing 306 n n 
C28 C29 R78 sing 307 n n 
C28 N7 R78 sing 308 n n 
N7 C30 R78 sing 309 n n 
C18 C19 R78 doub 310 n y 
C16 O3 R78 sing 311 n n 
O3 C31 R78 sing 312 n n 
N5 C1 R78 sing 313 n n 
C1 N2 R78 doub 314 n y 
N2 C2 R78 sing 315 n y 
C2 C3 R78 doub 316 n y 
N4 C11 R78 sing 317 n n 
N4 C3 R78 sing 318 n n 
C4 H4 R78 sing 319 n n 
C5 H5 R78 sing 320 n n 
C8 H8 R78 sing 321 n n 
C10 H10 R78 sing 322 n n 
C10 H10A R78 sing 323 n n 
C10 H10B R78 sing 324 n n 
C13 H13 R78 sing 325 n n 
C13 H13A R78 sing 326 n n 
C15 H15 R78 sing 327 n n 
C15 H15A R78 sing 328 n n 
C17 H17 R78 sing 329 n n 
C20 H20 R78 sing 330 n n 
C22 H22 R78 sing 331 n n 
C24 H24 R78 sing 332 n n 
C24 H24A R78 sing 333 n n 
C28 H28 R78 sing 334 n n 
C28 H28A R78 sing 335 n n 
N6 HN6 R78 sing 336 n n 
C29 H29 R78 sing 337 n n 
C29 H29A R78 sing 338 n n 
C30 H30 R78 sing 339 n n 
C30 H30A R78 sing 340 n n 
C30 H30B R78 sing 341 n n 
C23 H23 R78 sing 342 n n 
C23 H23A R78 sing 343 n n 
C31 H31 R78 sing 344 n n 
C31 H31A R78 sing 345 n n 
C31 H31B R78 sing 346 n n 
C19 H19 R78 sing 347 n n 
N5 HN5 R78 sing 348 n n 
C14 H14 R78 sing 349 n n 
C14 H14A R78 sing 350 n n 
C12 H12 R78 sing 351 n n 
C12 H12A R78 sing 352 n n 
C9 H9 R78 sing 353 n n 
C9 H9A R78 sing 354 n n 
C11 H11 R78 sing 355 n n 
C11 H11A R78 sing 356 n n 
C11 H11B R78 sing 357 n n 
#
_atom_sites.entry_id                     7N7M 
_atom_sites.fract_transf_matrix[1][1]    0.007331 
_atom_sites.fract_transf_matrix[1][2]    0.004232 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008465 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010526 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 R78 A 1 501 1 R78 DRG . 
C 3 SO4 A 1 502 1 SO4 SO4 . 
D 3 SO4 A 1 503 2 SO4 SO4 . 
E 3 SO4 A 1 504 3 SO4 SO4 . 
F 4 HOH A 1 601 9 HOH HOH . 
F 4 HOH A 2 602 25 HOH HOH . 
F 4 HOH A 3 603 4 HOH HOH . 
F 4 HOH A 4 604 18 HOH HOH . 
F 4 HOH A 5 605 12 HOH HOH . 
F 4 HOH A 6 606 49 HOH HOH . 
F 4 HOH A 7 607 40 HOH HOH . 
F 4 HOH A 8 608 39 HOH HOH . 
F 4 HOH A 9 609 30 HOH HOH . 
F 4 HOH A 10 610 44 HOH HOH . 
F 4 HOH A 11 611 33 HOH HOH . 
F 4 HOH A 12 612 35 HOH HOH . 
F 4 HOH A 13 613 60 HOH HOH . 
F 4 HOH A 14 614 28 HOH HOH . 
F 4 HOH A 15 615 45 HOH HOH . 
F 4 HOH A 16 616 2 HOH HOH . 
F 4 HOH A 17 617 56 HOH HOH . 
F 4 HOH A 18 618 3 HOH HOH . 
F 4 HOH A 19 619 66 HOH HOH . 
F 4 HOH A 20 620 1 HOH HOH . 
F 4 HOH A 21 621 11 HOH HOH . 
F 4 HOH A 22 622 13 HOH HOH . 
F 4 HOH A 23 623 20 HOH HOH . 
F 4 HOH A 24 624 21 HOH HOH . 
F 4 HOH A 25 625 63 HOH HOH . 
F 4 HOH A 26 626 61 HOH HOH . 
F 4 HOH A 27 627 43 HOH HOH . 
F 4 HOH A 28 628 53 HOH HOH . 
F 4 HOH A 29 629 37 HOH HOH . 
F 4 HOH A 30 630 34 HOH HOH . 
F 4 HOH A 31 631 23 HOH HOH . 
F 4 HOH A 32 632 15 HOH HOH . 
F 4 HOH A 33 633 58 HOH HOH . 
F 4 HOH A 34 634 26 HOH HOH . 
F 4 HOH A 35 635 5 HOH HOH . 
F 4 HOH A 36 636 17 HOH HOH . 
F 4 HOH A 37 637 52 HOH HOH . 
F 4 HOH A 38 638 42 HOH HOH . 
F 4 HOH A 39 639 65 HOH HOH . 
F 4 HOH A 40 640 31 HOH HOH . 
F 4 HOH A 41 641 10 HOH HOH . 
F 4 HOH A 42 642 48 HOH HOH . 
F 4 HOH A 43 643 32 HOH HOH . 
F 4 HOH A 44 644 59 HOH HOH . 
F 4 HOH A 45 645 19 HOH HOH . 
F 4 HOH A 46 646 50 HOH HOH . 
F 4 HOH A 47 647 38 HOH HOH . 
F 4 HOH A 48 648 16 HOH HOH . 
F 4 HOH A 49 649 22 HOH HOH . 
F 4 HOH A 50 650 6 HOH HOH . 
F 4 HOH A 51 651 51 HOH HOH . 
F 4 HOH A 52 652 29 HOH HOH . 
F 4 HOH A 53 653 57 HOH HOH . 
F 4 HOH A 54 654 46 HOH HOH . 
F 4 HOH A 55 655 7 HOH HOH . 
F 4 HOH A 56 656 14 HOH HOH . 
F 4 HOH A 57 657 24 HOH HOH . 
F 4 HOH A 58 658 54 HOH HOH . 
F 4 HOH A 59 659 55 HOH HOH . 
F 4 HOH A 60 660 8 HOH HOH . 
F 4 HOH A 61 661 27 HOH HOH . 
F 4 HOH A 62 662 41 HOH HOH . 
F 4 HOH A 63 663 36 HOH HOH . 
F 4 HOH A 64 664 64 HOH HOH . 
F 4 HOH A 65 665 62 HOH HOH . 
F 4 HOH A 66 666 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 R78 . . . B 2 137.747 -188.154 93.699 1 62.77 ? N1 R78 501 A 1 
HETATM 2 N N3 R78 . . . B 2 134.726 -190.826 93.136 1 70.83 ? N3 R78 501 A 1 
HETATM 3 C C4 R78 . . . B 2 137.125 -188.711 94.827 1 62.94 ? C4 R78 501 A 1 
HETATM 4 C C5 R78 . . . B 2 133.85 -191.252 94.297 1 72.34 ? C5 R78 501 A 1 
HETATM 5 C C6 R78 . . . B 2 134.463 -191.1 95.568 1 72.1 ? C6 R78 501 A 1 
HETATM 6 C C7 R78 . . . B 2 137.834 -188.362 90.144 1 68.12 ? C7 R78 501 A 1 
HETATM 7 C C8 R78 . . . B 2 134.524 -191.305 91.717 1 77.17 ? C8 R78 501 A 1 
HETATM 8 C C10 R78 . . . B 2 132.123 -189.727 95.55 1 72.17 ? C10 R78 501 A 1 
HETATM 9 C C13 R78 . . . B 2 132.34 -190.722 90.885 1 87.71 ? C13 R78 501 A 1 
HETATM 10 C C15 R78 . . . B 2 133.729 -192.604 91.581 1 83.43 ? C15 R78 501 A 1 
HETATM 11 C C17 R78 . . . B 2 137.871 -187.744 87.801 1 72.27 ? C17 R78 501 A 1 
HETATM 12 C C20 R78 . . . B 2 137.545 -189.686 89.79 1 69.69 ? C20 R78 501 A 1 
HETATM 13 C C21 R78 . . . B 2 137.443 -189.373 86.061 1 85.75 ? C21 R78 501 A 1 
HETATM 14 C C22 R78 . . . B 2 137.62 -188.358 83.736 1 108.37 ? C22 R78 501 A 1 
HETATM 15 C C24 R78 . . . B 2 136.01 -187.849 81.734 1 114.83 ? C24 R78 501 A 1 
HETATM 16 C C28 R78 . . . B 2 138.345 -186.975 81.709 1 114.92 ? C28 R78 501 A 1 
HETATM 17 O O2 R78 . . . B 2 137.056 -190.485 85.699 1 86.14 ? O2 R78 501 A 1 
HETATM 18 N N6 R78 . . . B 2 137.689 -188.337 85.218 1 96.7 ? N6 R78 501 A 1 
HETATM 19 C C29 R78 . . . B 2 138.491 -187.184 83.225 1 111.37 ? C29 R78 501 A 1 
HETATM 20 N N7 R78 . . . B 2 136.939 -186.765 81.299 1 120.71 ? N7 R78 501 A 1 
HETATM 21 C C30 R78 . . . B 2 136.465 -185.379 81.545 1 114.04 ? C30 R78 501 A 1 
HETATM 22 C C23 R78 . . . B 2 136.141 -188.269 83.239 1 111.83 ? C23 R78 501 A 1 
HETATM 23 C C18 R78 . . . B 2 137.58 -189.06 87.429 1 80.82 ? C18 R78 501 A 1 
HETATM 24 C C16 R78 . . . B 2 138.009 -187.394 89.141 1 69.78 ? C16 R78 501 A 1 
HETATM 25 O O3 R78 . . . B 2 138.296 -186.108 89.548 1 73.03 ? O3 R78 501 A 1 
HETATM 26 C C31 R78 . . . B 2 139.133 -185.303 88.695 1 75.81 ? C31 R78 501 A 1 
HETATM 27 C C19 R78 . . . B 2 137.408 -190.027 88.437 1 77.51 ? C19 R78 501 A 1 
HETATM 28 N N5 R78 . . . B 2 137.987 -187.926 91.411 1 66.78 ? N5 R78 501 A 1 
HETATM 29 C C1 R78 . . . B 2 137.355 -188.494 92.461 1 63.3 ? C1 R78 501 A 1 
HETATM 30 N N2 R78 . . . B 2 136.362 -189.38 92.317 1 60.78 ? N2 R78 501 A 1 
HETATM 31 C C2 R78 . . . B 2 135.729 -189.953 93.362 1 66.34 ? C2 R78 501 A 1 
HETATM 32 C C14 R78 . . . B 2 132.36 -192.251 91.017 1 85.11 ? C14 R78 501 A 1 
HETATM 33 C C12 R78 . . . B 2 133.788 -190.279 90.855 1 78.44 ? C12 R78 501 A 1 
HETATM 34 C C9 R78 . . . B 2 132.484 -190.509 94.27 1 72.25 ? C9 R78 501 A 1 
HETATM 35 O O1 R78 . . . B 2 134.008 -191.708 96.552 1 68 ? O1 R78 501 A 1 
HETATM 36 N N4 R78 . . . B 2 135.485 -190.222 95.738 1 68.49 ? N4 R78 501 A 1 
HETATM 37 C C11 R78 . . . B 2 136.072 -190.102 97.109 1 64.62 ? C11 R78 501 A 1 
HETATM 38 C C3 R78 . . . B 2 136.084 -189.62 94.671 1 65.12 ? C3 R78 501 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           38 
#