data_7N7N
#
_model_server_result.job_id            E4r38auXkSs4yVDD4wZnzA 
_model_server_result.datetime_utc      '2024-11-22 16:21:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7n7n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    7N7N 
#
_exptl.entry_id    7N7N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.813 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7N7N 
_cell.length_a            136.07 
_cell.length_b            136.07 
_cell.length_c            95.185 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7N7N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_527 x,x-y-3,-z+13/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 204.105 -353.52023 206.234167 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C34 H50 N8 O3' 
_chem_comp.formula_weight    618.813 
_chem_comp.id                IBI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Volasertib 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IBI sing 152 n n 
C1 N3 IBI sing 153 n n 
C2 N4 IBI sing 154 n n 
C5 C6 IBI sing 155 n n 
C5 N3 IBI sing 156 n n 
C6 N4 IBI sing 157 n n 
C7 C8 IBI sing 158 n n 
C7 C9 IBI sing 159 n n 
C8 C10 IBI sing 160 n n 
C11 C12 IBI sing 161 n n 
C11 C9 IBI sing 162 n n 
C12 C10 IBI sing 163 n n 
C15 C17 IBI doub 164 n y 
C15 C13 IBI sing 165 n y 
C16 C18 IBI doub 166 n y 
C16 O37 IBI sing 167 n n 
C16 C14 IBI sing 168 n y 
C17 C18 IBI sing 169 n y 
C17 C39 IBI sing 170 n n 
C21 C31 IBI sing 171 n n 
C21 N23 IBI sing 172 n n 
C21 C20 IBI sing 173 n n 
N22 C24 IBI sing 174 n n 
N22 C36 IBI sing 175 n n 
N22 C20 IBI sing 176 n n 
C24 C25 IBI doub 177 n y 
C24 C29 IBI sing 178 n y 
C31 C32 IBI sing 179 n n 
C33 C34 IBI sing 180 n n 
C33 C35 IBI sing 181 n n 
C33 N23 IBI sing 182 n n 
C38 O37 IBI sing 183 n n 
C39 O40 IBI doub 184 n n 
C39 N41 IBI sing 185 n n 
C14 N19 IBI sing 186 n n 
C14 C13 IBI doub 187 n y 
N19 C26 IBI sing 188 n n 
C26 N27 IBI doub 189 n y 
C26 N28 IBI sing 190 n y 
N27 C25 IBI sing 191 n y 
C25 N23 IBI sing 192 n n 
N28 C29 IBI doub 193 n y 
C20 O30 IBI doub 194 n n 
N41 C9 IBI sing 195 n n 
C10 N3 IBI sing 196 n n 
N4 C42 IBI sing 197 n n 
C42 C43 IBI sing 198 n n 
C43 C45 IBI sing 199 n n 
C43 C44 IBI sing 200 n n 
C45 C44 IBI sing 201 n n 
C1 H1 IBI sing 202 n n 
C1 H1A IBI sing 203 n n 
C2 H2 IBI sing 204 n n 
C2 H2A IBI sing 205 n n 
C5 H5 IBI sing 206 n n 
C5 H5A IBI sing 207 n n 
C6 H6 IBI sing 208 n n 
C6 H6A IBI sing 209 n n 
C7 H7 IBI sing 210 n n 
C7 H7A IBI sing 211 n n 
C8 H8 IBI sing 212 n n 
C8 H8A IBI sing 213 n n 
C11 H11 IBI sing 214 n n 
C11 H11A IBI sing 215 n n 
C12 H12 IBI sing 216 n n 
C12 H12A IBI sing 217 n n 
C15 H15 IBI sing 218 n n 
C18 H18 IBI sing 219 n n 
C21 H21 IBI sing 220 n n 
C31 H31 IBI sing 221 n n 
C31 H31A IBI sing 222 n n 
C32 H32 IBI sing 223 n n 
C32 H32A IBI sing 224 n n 
C32 H32B IBI sing 225 n n 
C33 H33 IBI sing 226 n n 
C34 H34 IBI sing 227 n n 
C34 H34A IBI sing 228 n n 
C34 H34B IBI sing 229 n n 
C35 H35 IBI sing 230 n n 
C35 H35A IBI sing 231 n n 
C35 H35B IBI sing 232 n n 
C36 H36 IBI sing 233 n n 
C36 H36A IBI sing 234 n n 
C36 H36B IBI sing 235 n n 
C38 H38 IBI sing 236 n n 
C38 H38A IBI sing 237 n n 
C38 H38B IBI sing 238 n n 
N19 HN19 IBI sing 239 n n 
C29 H29 IBI sing 240 n n 
C13 H13 IBI sing 241 n n 
N41 HN41 IBI sing 242 n n 
C9 H9 IBI sing 243 n n 
C10 H10 IBI sing 244 n n 
C42 H42 IBI sing 245 n n 
C42 H42A IBI sing 246 n n 
C43 H43 IBI sing 247 n n 
C45 H45 IBI sing 248 n n 
C45 H45A IBI sing 249 n n 
C44 H44 IBI sing 250 n n 
C44 H44A IBI sing 251 n n 
#
_atom_sites.entry_id                     7N7N 
_atom_sites.fract_transf_matrix[1][1]    0.007349 
_atom_sites.fract_transf_matrix[1][2]    0.004243 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008486 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010506 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IBI A 1 501 1 IBI DRG . 
C 3 SO4 A 1 502 1 SO4 SO4 . 
D 3 SO4 A 1 503 2 SO4 SO4 . 
E 3 SO4 A 1 504 3 SO4 SO4 . 
F 4 HOH A 1 601 113 HOH HOH . 
F 4 HOH A 2 602 58 HOH HOH . 
F 4 HOH A 3 603 110 HOH HOH . 
F 4 HOH A 4 604 23 HOH HOH . 
F 4 HOH A 5 605 116 HOH HOH . 
F 4 HOH A 6 606 117 HOH HOH . 
F 4 HOH A 7 607 104 HOH HOH . 
F 4 HOH A 8 608 26 HOH HOH . 
F 4 HOH A 9 609 88 HOH HOH . 
F 4 HOH A 10 610 63 HOH HOH . 
F 4 HOH A 11 611 96 HOH HOH . 
F 4 HOH A 12 612 29 HOH HOH . 
F 4 HOH A 13 613 90 HOH HOH . 
F 4 HOH A 14 614 69 HOH HOH . 
F 4 HOH A 15 615 2 HOH HOH . 
F 4 HOH A 16 616 3 HOH HOH . 
F 4 HOH A 17 617 11 HOH HOH . 
F 4 HOH A 18 618 19 HOH HOH . 
F 4 HOH A 19 619 28 HOH HOH . 
F 4 HOH A 20 620 38 HOH HOH . 
F 4 HOH A 21 621 87 HOH HOH . 
F 4 HOH A 22 622 114 HOH HOH . 
F 4 HOH A 23 623 62 HOH HOH . 
F 4 HOH A 24 624 42 HOH HOH . 
F 4 HOH A 25 625 73 HOH HOH . 
F 4 HOH A 26 626 120 HOH HOH . 
F 4 HOH A 27 627 33 HOH HOH . 
F 4 HOH A 28 628 67 HOH HOH . 
F 4 HOH A 29 629 9 HOH HOH . 
F 4 HOH A 30 630 16 HOH HOH . 
F 4 HOH A 31 631 64 HOH HOH . 
F 4 HOH A 32 632 85 HOH HOH . 
F 4 HOH A 33 633 54 HOH HOH . 
F 4 HOH A 34 634 47 HOH HOH . 
F 4 HOH A 35 635 91 HOH HOH . 
F 4 HOH A 36 636 1 HOH HOH . 
F 4 HOH A 37 637 30 HOH HOH . 
F 4 HOH A 38 638 37 HOH HOH . 
F 4 HOH A 39 639 35 HOH HOH . 
F 4 HOH A 40 640 115 HOH HOH . 
F 4 HOH A 41 641 89 HOH HOH . 
F 4 HOH A 42 642 4 HOH HOH . 
F 4 HOH A 43 643 111 HOH HOH . 
F 4 HOH A 44 644 43 HOH HOH . 
F 4 HOH A 45 645 84 HOH HOH . 
F 4 HOH A 46 646 46 HOH HOH . 
F 4 HOH A 47 647 18 HOH HOH . 
F 4 HOH A 48 648 40 HOH HOH . 
F 4 HOH A 49 649 21 HOH HOH . 
F 4 HOH A 50 650 50 HOH HOH . 
F 4 HOH A 51 651 102 HOH HOH . 
F 4 HOH A 52 652 56 HOH HOH . 
F 4 HOH A 53 653 86 HOH HOH . 
F 4 HOH A 54 654 83 HOH HOH . 
F 4 HOH A 55 655 72 HOH HOH . 
F 4 HOH A 56 656 94 HOH HOH . 
F 4 HOH A 57 657 10 HOH HOH . 
F 4 HOH A 58 658 5 HOH HOH . 
F 4 HOH A 59 659 32 HOH HOH . 
F 4 HOH A 60 660 65 HOH HOH . 
F 4 HOH A 61 661 41 HOH HOH . 
F 4 HOH A 62 662 24 HOH HOH . 
F 4 HOH A 63 663 60 HOH HOH . 
F 4 HOH A 64 664 57 HOH HOH . 
F 4 HOH A 65 665 106 HOH HOH . 
F 4 HOH A 66 666 105 HOH HOH . 
F 4 HOH A 67 667 78 HOH HOH . 
F 4 HOH A 68 668 6 HOH HOH . 
F 4 HOH A 69 669 51 HOH HOH . 
F 4 HOH A 70 670 15 HOH HOH . 
F 4 HOH A 71 671 81 HOH HOH . 
F 4 HOH A 72 672 108 HOH HOH . 
F 4 HOH A 73 673 55 HOH HOH . 
F 4 HOH A 74 674 31 HOH HOH . 
F 4 HOH A 75 675 99 HOH HOH . 
F 4 HOH A 76 676 80 HOH HOH . 
F 4 HOH A 77 677 48 HOH HOH . 
F 4 HOH A 78 678 92 HOH HOH . 
F 4 HOH A 79 679 77 HOH HOH . 
F 4 HOH A 80 680 98 HOH HOH . 
F 4 HOH A 81 681 27 HOH HOH . 
F 4 HOH A 82 682 71 HOH HOH . 
F 4 HOH A 83 683 100 HOH HOH . 
F 4 HOH A 84 684 53 HOH HOH . 
F 4 HOH A 85 685 70 HOH HOH . 
F 4 HOH A 86 686 119 HOH HOH . 
F 4 HOH A 87 687 101 HOH HOH . 
F 4 HOH A 88 688 22 HOH HOH . 
F 4 HOH A 89 689 109 HOH HOH . 
F 4 HOH A 90 690 112 HOH HOH . 
F 4 HOH A 91 691 49 HOH HOH . 
F 4 HOH A 92 692 12 HOH HOH . 
F 4 HOH A 93 693 36 HOH HOH . 
F 4 HOH A 94 694 17 HOH HOH . 
F 4 HOH A 95 695 68 HOH HOH . 
F 4 HOH A 96 696 95 HOH HOH . 
F 4 HOH A 97 697 107 HOH HOH . 
F 4 HOH A 98 698 52 HOH HOH . 
F 4 HOH A 99 699 97 HOH HOH . 
F 4 HOH A 100 700 14 HOH HOH . 
F 4 HOH A 101 701 93 HOH HOH . 
F 4 HOH A 102 702 118 HOH HOH . 
F 4 HOH A 103 703 74 HOH HOH . 
F 4 HOH A 104 704 7 HOH HOH . 
F 4 HOH A 105 705 8 HOH HOH . 
F 4 HOH A 106 706 82 HOH HOH . 
F 4 HOH A 107 707 75 HOH HOH . 
F 4 HOH A 108 708 76 HOH HOH . 
F 4 HOH A 109 709 103 HOH HOH . 
F 4 HOH A 110 710 13 HOH HOH . 
F 4 HOH A 111 711 20 HOH HOH . 
F 4 HOH A 112 712 44 HOH HOH . 
F 4 HOH A 113 713 59 HOH HOH . 
F 4 HOH A 114 714 79 HOH HOH . 
F 4 HOH A 115 715 61 HOH HOH . 
F 4 HOH A 116 716 39 HOH HOH . 
F 4 HOH A 117 717 66 HOH HOH . 
F 4 HOH A 118 718 45 HOH HOH . 
F 4 HOH A 119 719 25 HOH HOH . 
F 4 HOH A 120 720 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IBI . . . B 2 136.86 -183.894 82.183 1 179.62 ? C1 IBI 501 A 1 
HETATM 2 C C2 IBI . . . B 2 136.909 -182.576 81.392 1 180.56 ? C2 IBI 501 A 1 
HETATM 3 C C5 IBI . . . B 2 137.198 -185.115 80.039 1 182.23 ? C5 IBI 501 A 1 
HETATM 4 C C6 IBI . . . B 2 137.252 -183.76 79.314 1 182.7 ? C6 IBI 501 A 1 
HETATM 5 C C7 IBI . . . B 2 135.295 -188.195 83.284 1 157.46 ? C7 IBI 501 A 1 
HETATM 6 C C8 IBI . . . B 2 135.278 -186.715 82.816 1 166.08 ? C8 IBI 501 A 1 
HETATM 7 C C11 IBI . . . B 2 137.916 -188.039 83.266 1 155.68 ? C11 IBI 501 A 1 
HETATM 8 C C12 IBI . . . B 2 137.76 -186.553 82.941 1 162.18 ? C12 IBI 501 A 1 
HETATM 9 C C15 IBI . . . B 2 136.688 -189.908 88.625 1 105.41 ? C15 IBI 501 A 1 
HETATM 10 C C16 IBI . . . B 2 137.578 -187.366 89.329 1 98.55 ? C16 IBI 501 A 1 
HETATM 11 C C17 IBI . . . B 2 137.11 -189.02 87.623 1 113.4 ? C17 IBI 501 A 1 
HETATM 12 C C18 IBI . . . B 2 137.565 -187.752 87.985 1 104.1 ? C18 IBI 501 A 1 
HETATM 13 C C21 IBI . . . B 2 133.259 -191.255 94.578 1 76.17 ? C21 IBI 501 A 1 
HETATM 14 N N22 IBI . . . B 2 134.841 -190.074 96.001 1 78.03 ? N22 IBI 501 A 1 
HETATM 15 C C24 IBI . . . B 2 135.427 -189.492 94.907 1 76.96 ? C24 IBI 501 A 1 
HETATM 16 C C31 IBI . . . B 2 131.777 -190.835 94.55 1 82.05 ? C31 IBI 501 A 1 
HETATM 17 C C32 IBI . . . B 2 131.643 -189.326 94.785 1 85.51 ? C32 IBI 501 A 1 
HETATM 18 C C33 IBI . . . B 2 133.78 -191.1 91.934 1 72.39 ? C33 IBI 501 A 1 
HETATM 19 C C34 IBI . . . B 2 132.827 -190.101 91.26 1 73.06 ? C34 IBI 501 A 1 
HETATM 20 C C35 IBI . . . B 2 133.241 -192.517 91.697 1 73.38 ? C35 IBI 501 A 1 
HETATM 21 C C36 IBI . . . B 2 135.391 -189.813 97.373 1 69.73 ? C36 IBI 501 A 1 
HETATM 22 C C38 IBI . . . B 2 137.519 -185.056 88.897 1 94.79 ? C38 IBI 501 A 1 
HETATM 23 C C39 IBI . . . B 2 137.105 -189.39 86.272 1 123.64 ? C39 IBI 501 A 1 
HETATM 24 O O40 IBI . . . B 2 137.502 -190.508 85.936 1 124 ? O40 IBI 501 A 1 
HETATM 25 O O37 IBI . . . B 2 138.014 -186.127 89.723 1 100.74 ? O37 IBI 501 A 1 
HETATM 26 C C14 IBI . . . B 2 137.154 -188.248 90.336 1 91.44 ? C14 IBI 501 A 1 
HETATM 27 N N19 IBI . . . B 2 137.23 -187.769 91.598 1 82.53 ? N19 IBI 501 A 1 
HETATM 28 C C26 IBI . . . B 2 136.636 -188.347 92.661 1 77.03 ? C26 IBI 501 A 1 
HETATM 29 N N27 IBI . . . B 2 135.651 -189.258 92.542 1 72.69 ? N27 IBI 501 A 1 
HETATM 30 C C25 IBI . . . B 2 135.049 -189.836 93.602 1 73.59 ? C25 IBI 501 A 1 
HETATM 31 N N23 IBI . . . B 2 134.063 -190.729 93.386 1 76.8 ? N23 IBI 501 A 1 
HETATM 32 N N28 IBI . . . B 2 137.044 -187.981 93.888 1 74.06 ? N28 IBI 501 A 1 
HETATM 33 C C29 IBI . . . B 2 136.446 -188.541 95.039 1 76.54 ? C29 IBI 501 A 1 
HETATM 34 C C20 IBI . . . B 2 133.803 -190.955 95.872 1 74.8 ? C20 IBI 501 A 1 
HETATM 35 O O30 IBI . . . B 2 133.311 -191.483 96.889 1 55.86 ? O30 IBI 501 A 1 
HETATM 36 C C13 IBI . . . B 2 136.71 -189.527 89.974 1 97.85 ? C13 IBI 501 A 1 
HETATM 37 N N41 IBI . . . B 2 136.681 -188.441 85.399 1 139.64 ? N41 IBI 501 A 1 
HETATM 38 C C9 IBI . . . B 2 136.648 -188.655 83.933 1 151.72 ? C9 IBI 501 A 1 
HETATM 39 C C10 IBI . . . B 2 136.545 -186.373 82.015 1 171.2 ? C10 IBI 501 A 1 
HETATM 40 N N3 IBI . . . B 2 136.47 -185.05 81.332 1 179.53 ? N3 IBI 501 A 1 
HETATM 41 N N4 IBI . . . B 2 137.775 -182.704 80.202 1 181.84 ? N4 IBI 501 A 1 
HETATM 42 C C42 IBI . . . B 2 137.874 -181.419 79.482 1 176.79 ? C42 IBI 501 A 1 
HETATM 43 C C43 IBI . . . B 2 139.307 -180.864 79.496 1 172.53 ? C43 IBI 501 A 1 
HETATM 44 C C45 IBI . . . B 2 139.776 -180.23 78.194 1 169.4 ? C45 IBI 501 A 1 
HETATM 45 C C44 IBI . . . B 2 139.424 -179.35 79.381 1 167.44 ? C44 IBI 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           45 
#