data_7N7O # _model_server_result.job_id p83NqPIwDe4ap7VB2LjOFA _model_server_result.datetime_utc '2024-11-05 08:26:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7n7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7N7O # _exptl.entry_id 7N7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.533 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ACETYL-8-CYCLOPENTYL-5-METHYL-2-[(5-PIPERAZIN-1-YLPYRIDIN-2-YL)AMINO]PYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7N7O _cell.length_a 135.901 _cell.length_b 135.901 _cell.length_c 95.014 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_527 x,x-y-3,-z+13/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 203.8515 -353.081155 205.863667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H29 N7 O2' _chem_comp.formula_weight 447.533 _chem_comp.id LQQ _chem_comp.mon_nstd_flag . _chem_comp.name 6-ACETYL-8-CYCLOPENTYL-5-METHYL-2-[(5-PIPERAZIN-1-YLPYRIDIN-2-YL)AMINO]PYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Palbociclib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 LQQ doub 194 n n C02 C01 LQQ sing 195 n n C02 C03 LQQ sing 196 n n C01 H011 LQQ sing 197 n n C01 H012 LQQ sing 198 n n C01 H013 LQQ sing 199 n n C03 C04 LQQ doub 200 n y C03 C15 LQQ sing 201 n y C04 C05 LQQ sing 202 n n C04 C06 LQQ sing 203 n y C05 H051 LQQ sing 204 n n C05 H052 LQQ sing 205 n n C05 H053 LQQ sing 206 n n C06 C07 LQQ sing 207 n y C06 C09 LQQ doub 208 n y C07 N01 LQQ doub 209 n y C07 H1 LQQ sing 210 n n N01 C08 LQQ sing 211 n y C08 N02 LQQ doub 212 n y C08 N04 LQQ sing 213 n n N02 C09 LQQ sing 214 n y C09 N03 LQQ sing 215 n y N03 C10 LQQ sing 216 n n N03 C15 LQQ sing 217 n y C10 C11 LQQ sing 218 n n C10 C14 LQQ sing 219 n n C10 H10 LQQ sing 220 n n C11 C12 LQQ sing 221 n n C11 H111 LQQ sing 222 n n C11 H112 LQQ sing 223 n n C12 C13 LQQ sing 224 n n C12 H121 LQQ sing 225 n n C12 H122 LQQ sing 226 n n C13 C14 LQQ sing 227 n n C13 H131 LQQ sing 228 n n C13 H132 LQQ sing 229 n n C14 H141 LQQ sing 230 n n C14 H142 LQQ sing 231 n n C15 O02 LQQ doub 232 n n N04 C16 LQQ sing 233 n n N04 H04 LQQ sing 234 n n C16 N05 LQQ doub 235 n y C16 C20 LQQ sing 236 n y N05 C17 LQQ sing 237 n y C17 C18 LQQ doub 238 n y C17 H17 LQQ sing 239 n n C18 C19 LQQ sing 240 n y C18 N06 LQQ sing 241 n n C19 C20 LQQ doub 242 n y C19 H19 LQQ sing 243 n n C20 H20 LQQ sing 244 n n N06 C21 LQQ sing 245 n n N06 C24 LQQ sing 246 n n C21 C22 LQQ sing 247 n n C21 H211 LQQ sing 248 n n C21 H212 LQQ sing 249 n n C22 N07 LQQ sing 250 n n C22 H221 LQQ sing 251 n n C22 H222 LQQ sing 252 n n N07 C23 LQQ sing 253 n n N07 H07 LQQ sing 254 n n C23 C24 LQQ sing 255 n n C23 H231 LQQ sing 256 n n C23 H232 LQQ sing 257 n n C24 H241 LQQ sing 258 n n C24 H242 LQQ sing 259 n n # _atom_sites.entry_id 7N7O _atom_sites.fract_transf_matrix[1][1] 0.007358 _atom_sites.fract_transf_matrix[1][2] 0.004248 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LQQ A 1 501 1 LQQ DRG . C 3 SO4 A 1 502 1 SO4 SO4 . D 3 SO4 A 1 503 2 SO4 SO4 . E 4 HOH A 1 601 17 HOH HOH . E 4 HOH A 2 602 70 HOH HOH . E 4 HOH A 3 603 54 HOH HOH . E 4 HOH A 4 604 29 HOH HOH . E 4 HOH A 5 605 25 HOH HOH . E 4 HOH A 6 606 55 HOH HOH . E 4 HOH A 7 607 34 HOH HOH . E 4 HOH A 8 608 7 HOH HOH . E 4 HOH A 9 609 26 HOH HOH . E 4 HOH A 10 610 2 HOH HOH . E 4 HOH A 11 611 69 HOH HOH . E 4 HOH A 12 612 30 HOH HOH . E 4 HOH A 13 613 20 HOH HOH . E 4 HOH A 14 614 58 HOH HOH . E 4 HOH A 15 615 5 HOH HOH . E 4 HOH A 16 616 9 HOH HOH . E 4 HOH A 17 617 23 HOH HOH . E 4 HOH A 18 618 45 HOH HOH . E 4 HOH A 19 619 48 HOH HOH . E 4 HOH A 20 620 1 HOH HOH . E 4 HOH A 21 621 62 HOH HOH . E 4 HOH A 22 622 52 HOH HOH . E 4 HOH A 23 623 22 HOH HOH . E 4 HOH A 24 624 24 HOH HOH . E 4 HOH A 25 625 71 HOH HOH . E 4 HOH A 26 626 28 HOH HOH . E 4 HOH A 27 627 12 HOH HOH . E 4 HOH A 28 628 56 HOH HOH . E 4 HOH A 29 629 43 HOH HOH . E 4 HOH A 30 630 60 HOH HOH . E 4 HOH A 31 631 51 HOH HOH . E 4 HOH A 32 632 32 HOH HOH . E 4 HOH A 33 633 10 HOH HOH . E 4 HOH A 34 634 38 HOH HOH . E 4 HOH A 35 635 21 HOH HOH . E 4 HOH A 36 636 6 HOH HOH . E 4 HOH A 37 637 65 HOH HOH . E 4 HOH A 38 638 18 HOH HOH . E 4 HOH A 39 639 47 HOH HOH . E 4 HOH A 40 640 8 HOH HOH . E 4 HOH A 41 641 11 HOH HOH . E 4 HOH A 42 642 42 HOH HOH . E 4 HOH A 43 643 57 HOH HOH . E 4 HOH A 44 644 14 HOH HOH . E 4 HOH A 45 645 46 HOH HOH . E 4 HOH A 46 646 15 HOH HOH . E 4 HOH A 47 647 59 HOH HOH . E 4 HOH A 48 648 49 HOH HOH . E 4 HOH A 49 649 41 HOH HOH . E 4 HOH A 50 650 36 HOH HOH . E 4 HOH A 51 651 67 HOH HOH . E 4 HOH A 52 652 4 HOH HOH . E 4 HOH A 53 653 61 HOH HOH . E 4 HOH A 54 654 53 HOH HOH . E 4 HOH A 55 655 13 HOH HOH . E 4 HOH A 56 656 16 HOH HOH . E 4 HOH A 57 657 63 HOH HOH . E 4 HOH A 58 658 50 HOH HOH . E 4 HOH A 59 659 44 HOH HOH . E 4 HOH A 60 660 39 HOH HOH . E 4 HOH A 61 661 3 HOH HOH . E 4 HOH A 62 662 33 HOH HOH . E 4 HOH A 63 663 68 HOH HOH . E 4 HOH A 64 664 35 HOH HOH . E 4 HOH A 65 665 66 HOH HOH . E 4 HOH A 66 666 40 HOH HOH . E 4 HOH A 67 667 31 HOH HOH . E 4 HOH A 68 668 19 HOH HOH . E 4 HOH A 69 669 64 HOH HOH . E 4 HOH A 70 670 27 HOH HOH . E 4 HOH A 71 671 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 LQQ . . . B 2 132.914 -191.676 96.973 1 64.57 ? O01 LQQ 501 A 1 HETATM 2 C C02 LQQ . . . B 2 132.599 -190.647 96.37 1 72.49 ? C02 LQQ 501 A 1 HETATM 3 C C01 LQQ . . . B 2 131.316 -189.881 96.754 1 69.34 ? C01 LQQ 501 A 1 HETATM 4 C C03 LQQ . . . B 2 133.372 -190.09 95.318 1 77.69 ? C03 LQQ 501 A 1 HETATM 5 C C04 LQQ . . . B 2 134.543 -189.332 95.578 1 80.1 ? C04 LQQ 501 A 1 HETATM 6 C C05 LQQ . . . B 2 135.024 -189.107 96.888 1 71.98 ? C05 LQQ 501 A 1 HETATM 7 C C06 LQQ . . . B 2 135.252 -188.803 94.488 1 78.65 ? C06 LQQ 501 A 1 HETATM 8 C C07 LQQ . . . B 2 136.409 -188.056 94.676 1 77.59 ? C07 LQQ 501 A 1 HETATM 9 N N01 LQQ . . . B 2 137.091 -187.552 93.563 1 74.85 ? N01 LQQ 501 A 1 HETATM 10 C C08 LQQ . . . B 2 136.647 -187.781 92.321 1 76.68 ? C08 LQQ 501 A 1 HETATM 11 N N02 LQQ . . . B 2 135.521 -188.498 92.15 1 79.39 ? N02 LQQ 501 A 1 HETATM 12 C C09 LQQ . . . B 2 134.816 -189.022 93.18 1 78.29 ? C09 LQQ 501 A 1 HETATM 13 N N03 LQQ . . . B 2 133.695 -189.745 92.933 1 79.82 ? N03 LQQ 501 A 1 HETATM 14 C C10 LQQ . . . B 2 133.331 -189.888 91.464 1 83 ? C10 LQQ 501 A 1 HETATM 15 C C11 LQQ . . . B 2 131.911 -189.37 91.134 1 87.29 ? C11 LQQ 501 A 1 HETATM 16 C C12 LQQ . . . B 2 131.194 -190.535 90.448 1 90.77 ? C12 LQQ 501 A 1 HETATM 17 C C13 LQQ . . . B 2 131.983 -191.79 90.852 1 88.61 ? C13 LQQ 501 A 1 HETATM 18 C C14 LQQ . . . B 2 133.426 -191.31 90.917 1 84.51 ? C14 LQQ 501 A 1 HETATM 19 C C15 LQQ . . . B 2 132.966 -190.276 93.975 1 79.11 ? C15 LQQ 501 A 1 HETATM 20 O O02 LQQ . . . B 2 131.942 -190.938 93.759 1 82.55 ? O02 LQQ 501 A 1 HETATM 21 N N04 LQQ . . . B 2 137.364 -187.238 91.319 1 81.39 ? N04 LQQ 501 A 1 HETATM 22 C C16 LQQ . . . B 2 137.269 -187.57 90.015 1 88.66 ? C16 LQQ 501 A 1 HETATM 23 N N05 LQQ . . . B 2 137.666 -186.637 89.115 1 92.1 ? N05 LQQ 501 A 1 HETATM 24 C C17 LQQ . . . B 2 137.634 -186.884 87.724 1 94.35 ? C17 LQQ 501 A 1 HETATM 25 C C18 LQQ . . . B 2 137.186 -188.123 87.238 1 101.51 ? C18 LQQ 501 A 1 HETATM 26 C C19 LQQ . . . B 2 136.777 -189.088 88.176 1 97.32 ? C19 LQQ 501 A 1 HETATM 27 C C20 LQQ . . . B 2 136.825 -188.817 89.552 1 92.7 ? C20 LQQ 501 A 1 HETATM 28 N N06 LQQ . . . B 2 137.14 -188.37 85.901 1 103.55 ? N06 LQQ 501 A 1 HETATM 29 C C21 LQQ . . . B 2 137.537 -187.281 84.934 1 104.49 ? C21 LQQ 501 A 1 HETATM 30 C C22 LQQ . . . B 2 136.987 -187.479 83.515 1 100.89 ? C22 LQQ 501 A 1 HETATM 31 N N07 LQQ . . . B 2 135.783 -188.335 83.52 1 115.54 ? N07 LQQ 501 A 1 HETATM 32 C C23 LQQ . . . B 2 136.079 -189.704 83.993 1 109.2 ? C23 LQQ 501 A 1 HETATM 33 C C24 LQQ . . . B 2 136.69 -189.719 85.412 1 105.14 ? C24 LQQ 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #